Rmu_sc0004350.1_g000004

Protein FAR1-RELATED SEQUENCE

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004350.1
Physical Location & Seq
Forward (+)
8569 .. 10424
1856 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004350.1_g000004.1.cds

Sequence Viewer

Length: 1668 bp
atggaacaatcgtccaacgattcggaggacattattctcactaatgatgaaggaacagtggatgattcattaaagagcttagaggatgatcaagaaaatgaggaggaagaaattattctcactaatgaccaaggaacagtggatgattcatcaaagagcttagagaatgatcaagaaaatgaggtggaagaaataatgcgagtgcccagtgttgagatgagttttgattctattgatgagacatatgactattatagaaaatatgggaagcaattaggattcccagtgagaaagagaacattaagaaagggtgatgatgggatcacaaaatatataactatttcatgtggtcgagcaggaaaatttaaaagtaagtccagtaactctctaaagccgcatccaagtgtgaagactgattgcaagacacttattagacttggtaaatcccttgatggaaagtggaaaatcaattctacaaagcttgagcataaccatggtttgagtctaagaaaatcttgttatttcccagtcaatcgtgaattaagttcatcaataaaaaggaagcttgaactaaatgatgttgctagaatatggttaaacaagagttttaactcaattgttgttgaagctcaaggatatgagaatgtaccatttttagaaaaggatgctcgaaatcacattgaaaaatttaggcgattacagctcaaggaaggtgatgctactgcagttcagacttactttttggatttgcaagctaagaatgctagtttcttctatgccattgatataaatgaaaagggtcgattgagaaatttgttttgggcatatgcaaggagtagggcggcataccaagaatttggtgatgttgttacatttgacactacttacctgacgaataagtatgaaatgccctttgctccatttgtaggagtcaatcatcatgggcaatctatattgcttaaatgtggtttgatttcaagtgaagatattgagtcatttatttggttgttcaagtcttggctagcatgcatgtctaagaatgctcctaatagaataattactgaccaatatagagccatgaaaaatgtcattgagattgtctttccaaatactaggcaccgttggtgcttgtggcatatattgaagaagattcctgaaaagttgagaggatatacaaaatatgaatctatcttgatgaccttgctaaatatcgtttatgattcattggctcgagtagagtttgaagaacgttgggacgagatgattaagaaatatgagttgcatgaagataattggttgaatgtcatgtatgaggagagaaatcccagggttccaagcttcgttaaagattgtttttgggcaggaatgtctaccacacaacgaagtgaaagtaagaattcattttttgatggccatgtcaattccaagactaccttgaaacagtttgtggaacaatatgaaaaagcaatgagaagtaaggtggagaaagagaactacgaagatttcaagtgtttctcatatagtcttcctggtgcaactcattatgacatggaaaaacaagcacatgatatctacacaacttcaaagttcaaagagtttcgagatgaattaacaagtaaaatgtattgtaactttatttcagttgaagtggataattcaattttgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

555

Amino Acids

64.97

Weight (kDa)

5.96

Isoelectric Point (pI)

52.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000252)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80010
fragaria_vesca FvH4_2g24400 FvH4_2g24401 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_3g17011 FvH4_4g07801 FvH4_6g23211 FvH4_6g29411 FvH4_6g29411 FvH4_6g29411 FvH4_6g29432 FvH4_6g29432 FvH4_7g19111
malus_domestica MD05G1027500.v1.1 MD08G1156300.v1.1 MD15G1127000.v1.1 MD17G1214400.v1.1 MD17G1214600.v1.1
prunus_persica Prupe.1G268400_v2.0.a1 Prupe.1G482700_v2.0.a1 Prupe.2G013600_v2.0.a1 Prupe.2G072300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090500_v2.0.a1 Prupe.4G256500_v2.0.a1 Prupe.6G116200_v2.0.a1 Prupe.7G015200_v2.0.a1 Prupe.8G014900_v2.0.a1
pyrus_communis pycom05g24990 pycom12g03510 pycom16g12560 pycom17g21900 pycom17g21920
rosa_chinensis RchiOBHm_Chr2g0134881 RchiOBHm_Chr2g0134921 RchiOBHm_Chr6g0297621
rosa_laevigata RLG00000011576 RLG00000012728 RLG00000013853 RLG00000014630 RLG00000019427 RLG00000019430 RLG00000020625
rosa_multiflora Rmu_sc0001385.1_g000003 Rmu_sc0001541.1_g000005 Rmu_sc0001719.1_g000010 Rmu_sc0001719.1_g000011 Rmu_sc0002283.1_g000033 Rmu_sc0004350.1_g000004 Rmu_sc0004350.1_g000005 Rmu_sc0004406.1_g000014 Rmu_sc0004564.1_g000003 Rmu_sc0005198.1_g000003 Rmu_sc0005198.1_g000004 Rmu_sc0005198.1_g000005 Rmu_sc0023742.1_g000001 Rmu_sc0023743.1_g000001 Rmu_ssc0000291.1_g000011 Rmu_ssc0000291.1_g000012
rosa_roxburghii Rroxscaffold_2G00109640 Rroxscaffold_2G00109680 Rroxscaffold_2G00114370 Rroxscaffold_2G00135950 Rroxscaffold_3G00225840 Rroxscaffold_3G00227000 Rroxscaffold_7G00170310 Rroxscaffold_7G00172860 Rroxscaffold_7G00179400 Rroxscaffold_7G00198760
rosa_rugosa Rorug02G0321200 Rorug06G0274600 Rorug06G0274700 Rorug06G0274800 Rorug06G0274800 Rorug07G0274900 Rorug07G0275000 Rorug07G0340400
rosa_samantha Rh2AG372600 Rh2AG373100 Rh2BG044500 Rh2BG378300 Rh2BG378700 Rh2CG315500 Rh2CG356800 Rh2CG357600 Rh2DG395100 Rh2DG395500 Rh2DG586300 Rh3BG359900 Rh4BG117400 Rh4BG117500 Rh4DG152400 Rh4DG152500 Rh6AG165100 Rh6AG385200 Rh6BG170300 Rh6BG170400 Rh6BG170500 Rh6BG173200 Rh6BG173300 Rh6BG208000 Rh6BG208100 Rh6BG393300 Rh6CG163800 Rh6CG163900 Rh6CG164000 Rh6CG167300 Rh6CG241900 Rh6CG399100 Rh6DG159100 Rh6DG159200 Rh6DG233500 Rh6DG385700 Rh7AG495200 Rh7AG495300 Rh7BG402900 Rh7BG466600 Rh7BG466700 Rh7DG479900
rosa_wichuraiana Rw0G005930 Rw1G039690 Rw2G030340 Rw2G030400 Rw4G013030 Rw4G013040 Rw5G023130 Rw6G014200 Rw6G014280 Rw6G033560 Rw7G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1116
AccI GTMKAC 1 cut(s) 1370
AciI CCGC 2 cut(s) 395, 842
AclI AACGTT 1 cut(s) 1249
AclWI GGATC 1 cut(s) 329
AcoI YGGCCR 1 cut(s) 1411
AcsI RAATTY 5 cut(s) 362, 686, 811, 854, 1396
AfaI GTAC 1 cut(s) 648
AfiI CCNNNNNNNGG 1 cut(s) 926
AjnI CCWGG 2 cut(s) 1325, 1528
AjuI GAANNNNNNNTTGG 2 cut(s) 802, 834
AluBI AGCT 8 cut(s) 78, 159, 481, 565, 629, 703, 755, 1338
AluI AGCT 8 cut(s) 78, 159, 481, 565, 629, 703, 755, 1338
Alw26I GTCTC 1 cut(s) 233
AlwI GGATC 1 cut(s) 329
Ama87I CYCGRG 1 cut(s) 1230
AoxI GGCC 1 cut(s) 1411
ApoI RAATTY 5 cut(s) 362, 686, 811, 854, 1396
ArsI GACNNNNNNTTYG 2 cut(s) 724, 756
Asp700I GAANNNNTTC 1 cut(s) 114
AsuHPI GGTGA 3 cut(s) 323, 725, 872
AsuNHI GCTAGC 1 cut(s) 1021
AvaI CYCGRG 1 cut(s) 1230
BaeGI GKGCMC 1 cut(s) 207
BalI TGGCCA 1 cut(s) 1413
BanI GGYRCC 1 cut(s) 1116
BbsI GAAGAC 2 cut(s) 416, 1517
BccI CCATC 3 cut(s) 311, 446, 1403
BciT130I CCWGG 2 cut(s) 1327, 1530
BclI TGATCA 2 cut(s) 88, 169
BcoDI GTCTC 1 cut(s) 233
BfaI CTAG 4 cut(s) 585, 765, 1022, 1113
BfmI CTRYAG 1 cut(s) 723
BisI GCNGC 2 cut(s) 395, 843
BlsI GCNGC 2 cut(s) 396, 844
Bme1390I CCNGG 2 cut(s) 1327, 1530
BmeT110I CYCGRG 1 cut(s) 1230
BmiI GGNNCC 2 cut(s) 1118, 1332
BmrFI CCNGG 2 cut(s) 1327, 1530
BmrI ACTGGG 3 cut(s) 201, 278, 521
BmsI GCATC 3 cut(s) 406, 655, 706
BmtI GCTAGC 1 cut(s) 1025
BmuI ACTGGG 3 cut(s) 201, 278, 521
BpiI GAAGAC 2 cut(s) 416, 1517
BpuEI CTTGAG 3 cut(s) 503, 615, 689
BsaJI CCNNGG 4 cut(s) 130, 493, 1325, 1326
Bsc4I CCNNNNNNNGG 1 cut(s) 926
Bse1I ACTGG 4 cut(s) 207, 284, 378, 527
Bse3DI GCAATG 1 cut(s) 1473
BseBI CCWGG 2 cut(s) 1327, 1530
BseDI CCNNGG 4 cut(s) 130, 493, 1325, 1326
BseGI GGATG 5 cut(s) 67, 91, 148, 397, 670
BseLI CCNNNNNNNGG 1 cut(s) 926
BseMI GCAATG 1 cut(s) 1473
BseNI ACTGG 4 cut(s) 207, 284, 378, 527
BseRI GAGGAG 2 cut(s) 116, 1328
BseSI GKGCMC 1 cut(s) 207
BshFI GGCC 1 cut(s) 1413
BshNI GGYRCC 1 cut(s) 1116
BsiHKCI CYCGRG 1 cut(s) 1230
BslFI GGGAC 1 cut(s) 1268
BslI CCNNNNNNNGG 1 cut(s) 926
BsmAI GTCTC 1 cut(s) 233
BsmFI GGGAC 1 cut(s) 1268
BsmI GAATGC 2 cut(s) 766, 1045
BsnI GGCC 1 cut(s) 1413
BsoBI CYCGRG 1 cut(s) 1230
Bsp1286I GDGCHC 1 cut(s) 207
Bsp143I GATC 3 cut(s) 88, 169, 321
Bsp19I CCATGG 1 cut(s) 493
BspACI CCGC 2 cut(s) 395, 842
BspANI GGCC 1 cut(s) 1413
BspLI GGNNCC 2 cut(s) 1118, 1332
BspMAI CTGCAG 1 cut(s) 727
BspOI GCTAGC 1 cut(s) 1025
BspPI GGATC 1 cut(s) 329
BspT107I GGYRCC 1 cut(s) 1116
BsrDI GCAATG 1 cut(s) 1473
BsrI ACTGG 4 cut(s) 207, 284, 378, 527
BssECI CCNNGG 4 cut(s) 130, 493, 1325, 1326
BssMI GATC 3 cut(s) 88, 169, 321
BssT1I CCWWGG 2 cut(s) 130, 493
Bst2UI CCWGG 2 cut(s) 1327, 1530
Bst4CI ACNGT 4 cut(s) 58, 139, 1121, 1443
BstC8I GCNNGC 3 cut(s) 753, 1023, 1027
BstDEI CTNAG 5 cut(s) 79, 160, 506, 756, 1035
BstDSI CCRYGG 1 cut(s) 493
BstF5I GGATG 5 cut(s) 67, 91, 148, 397, 670
BstKTI GATC 3 cut(s) 91, 172, 324
BstMAI GTCTC 1 cut(s) 233
BstMBI GATC 3 cut(s) 88, 169, 321
BstMWI GCNNNNNNNGC 2 cut(s) 700, 761
BstNI CCWGG 2 cut(s) 1327, 1530
BstNSI RCATGY 2 cut(s) 1029, 1033
BstSCI CCNGG 2 cut(s) 1325, 1528
BstSFI CTRYAG 1 cut(s) 723
BstSLI GKGCMC 1 cut(s) 207
BstV2I GAAGAC 2 cut(s) 416, 1517
BstXI CCANNNNNNTGG 1 cut(s) 857
BsuRI GGCC 1 cut(s) 1413
BtgI CCRYGG 1 cut(s) 493
BtsCI GGATG 5 cut(s) 67, 91, 148, 397, 670
BtsIMutI CAGTG 4 cut(s) 63, 144, 214, 291
Cac8I GCNNGC 3 cut(s) 753, 1023, 1027
Csp6I GTAC 1 cut(s) 647
CviQI GTAC 1 cut(s) 647
DdeI CTNAG 5 cut(s) 79, 160, 506, 756, 1035
DpnI GATC 3 cut(s) 90, 171, 323
DpnII GATC 3 cut(s) 88, 169, 321
DraI TTTAAA 1 cut(s) 367
EaeI YGGCCR 1 cut(s) 1411
Eco130I CCWWGG 2 cut(s) 130, 493
Eco32I GATATC 1 cut(s) 1570
Eco88I CYCGRG 1 cut(s) 1230
EcoRI GAATTC 1 cut(s) 1396
EcoRII CCWGG 2 cut(s) 1325, 1528
EcoRV GATATC 1 cut(s) 1570
EcoT14I CCWWGG 2 cut(s) 130, 493
EcoT22I ATGCAT 1 cut(s) 1031
ErhI CCWWGG 2 cut(s) 130, 493
FalI AAGNNNNNCTT 4 cut(s) 499, 531, 1418, 1450
FaqI GGGAC 1 cut(s) 1268
FauNDI CATATG 2 cut(s) 244, 826
FbaI TGATCA 2 cut(s) 88, 169
FblI GTMKAC 1 cut(s) 1370
Fnu4HI GCNGC 2 cut(s) 395, 843
FokI GGATG 5 cut(s) 74, 98, 155, 384, 677
Fsp4HI GCNGC 2 cut(s) 395, 843
FspBI CTAG 4 cut(s) 585, 765, 1022, 1113
GluI GCNGC 2 cut(s) 395, 843
HaeIII GGCC 1 cut(s) 1413
HindIII AAGCTT 3 cut(s) 479, 563, 1336
HphI GGTGA 3 cut(s) 323, 725, 872
Hpy166II GTNNAC 1 cut(s) 1371
Hpy188I TCNGA 2 cut(s) 25, 732
Hpy188III TCNNGA 6 cut(s) 92, 173, 536, 1154, 1192, 1601
Hpy8I GTNNAC 1 cut(s) 1371
HpyAV CCTTC 2 cut(s) 44, 704
HpyCH4III ACNGT 4 cut(s) 58, 139, 1121, 1443
HpyCH4IV ACGT 1 cut(s) 1249
HpyCH4V TGCA 7 cut(s) 420, 725, 751, 830, 1029, 1282, 1535
HpyF10VI GCNNNNNNNGC 2 cut(s) 700, 761
HpyF3I CTNAG 5 cut(s) 79, 160, 506, 756, 1035
HpySE526I ACGT 1 cut(s) 1249
Ksp22I TGATCA 2 cut(s) 88, 169
Kzo9I GATC 3 cut(s) 88, 169, 321
LmnI GCTCC 2 cut(s) 922, 1048
LweI GCATC 3 cut(s) 406, 655, 706
MaeI CTAG 4 cut(s) 585, 765, 1022, 1113
MaeII ACGT 1 cut(s) 1249
MaeIII GTNAC 3 cut(s) 380, 868, 1628
MalI GATC 3 cut(s) 90, 171, 323
MboI GATC 3 cut(s) 88, 169, 321
MfeI CAATTG 1 cut(s) 615
MhlI GDGCHC 1 cut(s) 207
MlsI TGGCCA 1 cut(s) 1413
MluNI TGGCCA 1 cut(s) 1413
MlyI GAGTC 3 cut(s) 511, 939, 1001
MmeI TCCRAC 1 cut(s) 39
MnlI CCTC 7 cut(s) 19, 76, 94, 97, 175, 1160, 1306
Mox20I TGGCCA 1 cut(s) 1413
Mph1103I ATGCAT 1 cut(s) 1031
MroXI GAANNNNTTC 1 cut(s) 114
MscI TGGCCA 1 cut(s) 1413
MslI CAYNNNNRTG 2 cut(s) 402, 492
Msp20I TGGCCA 1 cut(s) 1413
MspR9I CCNGG 2 cut(s) 1327, 1530
MunI CAATTG 1 cut(s) 615
Mva1269I GAATGC 2 cut(s) 766, 1045
MvaI CCWGG 2 cut(s) 1327, 1530
MwoI GCNNNNNNNGC 2 cut(s) 700, 761
NcoI CCATGG 1 cut(s) 493
NdeI CATATG 2 cut(s) 244, 826
NdeII GATC 3 cut(s) 88, 169, 321
NheI GCTAGC 1 cut(s) 1021
NlaIV GGNNCC 2 cut(s) 1118, 1332
NsiI ATGCAT 1 cut(s) 1031
NspI RCATGY 2 cut(s) 1029, 1033
PaeI GCATGC 1 cut(s) 1029
PaeR7I CTCGAG 1 cut(s) 1230
PasI CCCWGGG 1 cut(s) 1326
PctI GAATGC 2 cut(s) 766, 1045
PdmI GAANNNNTTC 1 cut(s) 114
PfeI GAWTC 8 cut(s) 20, 65, 146, 227, 279, 1150, 1184, 1220
PkrI GCNGC 2 cut(s) 396, 844
PleI GAGTC 3 cut(s) 510, 938, 1000
PpsI GAGTC 3 cut(s) 510, 938, 1000
Psp1406I AACGTT 1 cut(s) 1249
Psp6I CCWGG 2 cut(s) 1325, 1528
PspGI CCWGG 2 cut(s) 1325, 1528
PspN4I GGNNCC 2 cut(s) 1118, 1332
PspXI VCTCGAGB 1 cut(s) 1230
PstI CTGCAG 1 cut(s) 727
RsaI GTAC 1 cut(s) 648
RsaNI GTAC 1 cut(s) 647
RseI CAYNNNNRTG 2 cut(s) 402, 492
SatI GCNGC 2 cut(s) 395, 843
Sau3AI GATC 3 cut(s) 88, 169, 321
SchI GAGTC 3 cut(s) 511, 939, 1001
ScrFI CCNGG 2 cut(s) 1327, 1530
SduI GDGCHC 1 cut(s) 207
SfaNI GCATC 3 cut(s) 406, 655, 706
SfcI CTRYAG 1 cut(s) 723
Sfr274I CTCGAG 1 cut(s) 1230
SlaI CTCGAG 1 cut(s) 1230
SmiMI CAYNNNNRTG 2 cut(s) 402, 492
SmlI CTYRAG 4 cut(s) 482, 630, 704, 1230
SmoI CTYRAG 4 cut(s) 482, 630, 704, 1230
SphI GCATGC 1 cut(s) 1029
SsiI CCGC 2 cut(s) 395, 842
SspMI CTAG 4 cut(s) 585, 765, 1022, 1113
StyD4I CCNGG 2 cut(s) 1325, 1528
StyI CCWWGG 2 cut(s) 130, 493
TaaI ACNGT 4 cut(s) 58, 139, 1121, 1443
TaiI ACGT 1 cut(s) 1252
TaqI TCGA 5 cut(s) 352, 670, 802, 1231, 1600
TauI GCSGC 2 cut(s) 397, 845
TfiI GAWTC 8 cut(s) 20, 65, 146, 227, 279, 1150, 1184, 1220
TscAI CASTG 4 cut(s) 63, 144, 214, 291
TspRI CASTG 4 cut(s) 63, 144, 214, 291
XapI RAATTY 5 cut(s) 362, 686, 811, 854, 1396
XceI RCATGY 2 cut(s) 1029, 1033
XhoI CTCGAG 1 cut(s) 1230
XmiI GTMKAC 1 cut(s) 1370
XmnI GAANNNNTTC 1 cut(s) 114
XspI CTAG 4 cut(s) 585, 765, 1022, 1113
Zsp2I ATGCAT 1 cut(s) 1031
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.