Rroxscaffold_7G00198760

plant mutator transposase zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000252
Physical Location & Seq
Reverse (-)
44438066 .. 44442697
4632 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00198760.1

Sequence Viewer

Length: 774 bp
ATGACTTGGTTGCACAACCTAAAGGATGAACTATCCAAACATGAGTCCAAGAACACCGGTGCTTGTAGTGGTGCTGAACCAATGCCCGGCTCACCTATCAATAGATCTGGGAGTGACATTGATGGTGCTTCAAATCCAGGTCAACAAATACTTACTCCATTGATAAATAAGAGAAAAGGATGCCCGCCATCTAAAGGAAAGGTTTCGAAGGTAGAGGAAGAGGGGTCAAGATCAAGAGGTTACCCGTTGTTAAAGAGAAATGAATCTAAGAAAGAGCAAGAGCAAGAGAGAAGAATCGTAAGGGGAGGAGGTGAAGCCGAAAAGGAGGCTAAAGAGGAGCCCGAAGAAGAGAAAGAGAATCTGCTGGAAGTTTCAACAACTCTAGCCCGAACTAGAAAAAATGAAGGAGATTGCAAAGCTGAAGCAACTGCCTCCGGTATACTCGGGAAAGTTAGGTGGAACTTGGACACTCTTGGAGGTTTTGTAATTATGAGAAGCAATGGGCAACCGGTGTACAATTTTTGTGTCACAGTTGATGATGCTAGCATGGTTATCTCACATGTTATTAGGCTCTTCAATTTTGTGTTGCGGGGATTGCTAGCACGTAAAATGTATGATACAACAAAAGCAATTGTGACTAATCTCATTACCATGAAGTGGCTTCAACTACGAGAGACTAGATGGGATTTCGGTACAAGATGGATGAGGAACCATTCAGATTTCACAACATTGTCCGCTACATCCATATTACCAGTTGCTGTTTTTCATTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SWIM

Protein Analysis

257

Amino Acids

28.76

Weight (kDa)

9.05

Isoelectric Point (pI)

52.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA-synt_1c PF00749 101 - 206 9.5e-10 tRNA synthetases class I (E and Q), catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000252)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80010
fragaria_vesca FvH4_2g24400 FvH4_2g24401 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_3g17011 FvH4_4g07801 FvH4_6g23211 FvH4_6g29411 FvH4_6g29411 FvH4_6g29411 FvH4_6g29432 FvH4_6g29432 FvH4_7g19111
malus_domestica MD05G1027500.v1.1 MD08G1156300.v1.1 MD15G1127000.v1.1 MD17G1214400.v1.1 MD17G1214600.v1.1
prunus_persica Prupe.1G268400_v2.0.a1 Prupe.1G482700_v2.0.a1 Prupe.2G013600_v2.0.a1 Prupe.2G072300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090500_v2.0.a1 Prupe.4G256500_v2.0.a1 Prupe.6G116200_v2.0.a1 Prupe.7G015200_v2.0.a1 Prupe.8G014900_v2.0.a1
pyrus_communis pycom05g24990 pycom12g03510 pycom16g12560 pycom17g21900 pycom17g21920
rosa_chinensis RchiOBHm_Chr2g0134881 RchiOBHm_Chr2g0134921 RchiOBHm_Chr6g0297621
rosa_laevigata RLG00000011576 RLG00000012728 RLG00000013853 RLG00000014630 RLG00000019427 RLG00000019430 RLG00000020625
rosa_multiflora Rmu_sc0001385.1_g000003 Rmu_sc0001541.1_g000005 Rmu_sc0001719.1_g000010 Rmu_sc0001719.1_g000011 Rmu_sc0002283.1_g000033 Rmu_sc0004350.1_g000004 Rmu_sc0004350.1_g000005 Rmu_sc0004406.1_g000014 Rmu_sc0004564.1_g000003 Rmu_sc0005198.1_g000003 Rmu_sc0005198.1_g000004 Rmu_sc0005198.1_g000005 Rmu_sc0023742.1_g000001 Rmu_sc0023743.1_g000001 Rmu_ssc0000291.1_g000011 Rmu_ssc0000291.1_g000012
rosa_roxburghii Rroxscaffold_2G00109640 Rroxscaffold_2G00109680 Rroxscaffold_2G00114370 Rroxscaffold_2G00135950 Rroxscaffold_3G00225840 Rroxscaffold_3G00227000 Rroxscaffold_7G00170310 Rroxscaffold_7G00172860 Rroxscaffold_7G00179400 Rroxscaffold_7G00198760
rosa_rugosa Rorug02G0321200 Rorug06G0274600 Rorug06G0274700 Rorug06G0274800 Rorug06G0274800 Rorug07G0274900 Rorug07G0275000 Rorug07G0340400
rosa_samantha Rh2AG372600 Rh2AG373100 Rh2BG044500 Rh2BG378300 Rh2BG378700 Rh2CG315500 Rh2CG356800 Rh2CG357600 Rh2DG395100 Rh2DG395500 Rh2DG586300 Rh3BG359900 Rh4BG117400 Rh4BG117500 Rh4DG152400 Rh4DG152500 Rh6AG165100 Rh6AG385200 Rh6BG170300 Rh6BG170400 Rh6BG170500 Rh6BG173200 Rh6BG173300 Rh6BG208000 Rh6BG208100 Rh6BG393300 Rh6CG163800 Rh6CG163900 Rh6CG164000 Rh6CG167300 Rh6CG241900 Rh6CG399100 Rh6DG159100 Rh6DG159200 Rh6DG233500 Rh6DG385700 Rh7AG495200 Rh7AG495300 Rh7BG402900 Rh7BG466600 Rh7BG466700 Rh7DG479900
rosa_wichuraiana Rw0G005930 Rw1G039690 Rw2G030340 Rw2G030400 Rw4G013030 Rw4G013040 Rw5G023130 Rw6G014200 Rw6G014280 Rw6G033560 Rw7G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 657
AccI GTMKAC 1 cut(s) 439
AciI CCGC 3 cut(s) 185, 589, 735
AcuI CTGAAG 1 cut(s) 441
AfaI GTAC 2 cut(s) 515, 694
AfiI CCNNNNNNNGG 3 cut(s) 86, 194, 657
AflIII ACRYGT 1 cut(s) 559
AgeI ACCGGT 2 cut(s) 56, 508
AgsI TTSAA 4 cut(s) 132, 375, 577, 665
AjnI CCWGG 1 cut(s) 136
AluBI AGCT 1 cut(s) 419
AluI AGCT 1 cut(s) 419
Alw26I GTCTC 1 cut(s) 668
AlwNI CAGNNNCTG 1 cut(s) 758
Ama87I CYCGRG 1 cut(s) 443
AsiGI ACCGGT 2 cut(s) 56, 508
Asp700I GAANNNNTTC 1 cut(s) 202
AsuC2I CCSGG 1 cut(s) 87
AsuHPI GGTGA 2 cut(s) 84, 323
AsuII TTCGAA 1 cut(s) 206
AsuNHI GCTAGC 2 cut(s) 542, 598
AvaI CYCGRG 1 cut(s) 443
BanII GRGCYC 1 cut(s) 342
BccI CCATC 4 cut(s) 116, 196, 675, 693
BciT130I CCWGG 1 cut(s) 138
BcnI CCSGG 1 cut(s) 87
BcoDI GTCTC 1 cut(s) 668
BfaI CTAG 5 cut(s) 383, 393, 543, 599, 678
BglII AGATCT 1 cut(s) 104
Bme1390I CCNGG 2 cut(s) 87, 138
BmeT110I CYCGRG 1 cut(s) 443
BmiI GGNNCC 2 cut(s) 339, 710
BmrFI CCNGG 2 cut(s) 87, 138
BmsI GCATC 2 cut(s) 170, 529
BmtI GCTAGC 2 cut(s) 546, 602
Bpu14I TTCGAA 1 cut(s) 206
BpuMI CCSGG 1 cut(s) 87
BsaAI YACGTR 1 cut(s) 605
BsaWI WCCGGW 3 cut(s) 56, 434, 508
BsaXI ACNNNNNCTCC 2 cut(s) 468, 498
Bsc4I CCNNNNNNNGG 3 cut(s) 86, 194, 657
Bse118I RCCGGY 2 cut(s) 56, 508
Bse1I ACTGG 1 cut(s) 752
Bse3DI GCAATG 1 cut(s) 505
BseBI CCWGG 1 cut(s) 138
BseGI GGATG 4 cut(s) 31, 185, 708, 740
BseLI CCNNNNNNNGG 3 cut(s) 86, 194, 657
BseMI GCAATG 1 cut(s) 505
BseNI ACTGG 1 cut(s) 752
BseRI GAGGAG 2 cut(s) 321, 350
BshTI ACCGGT 2 cut(s) 56, 508
BsiHKCI CYCGRG 1 cut(s) 443
BsiSI CCGG 4 cut(s) 57, 87, 435, 509
BslI CCNNNNNNNGG 3 cut(s) 86, 194, 657
BsmAI GTCTC 1 cut(s) 668
BsoBI CYCGRG 1 cut(s) 443
Bsp119I TTCGAA 1 cut(s) 206
Bsp1286I GDGCHC 1 cut(s) 342
Bsp1407I TGTACA 1 cut(s) 513
Bsp143I GATC 2 cut(s) 104, 230
BspACI CCGC 3 cut(s) 185, 589, 735
BspLI GGNNCC 2 cut(s) 339, 710
BspOI GCTAGC 2 cut(s) 546, 602
BspQI GCTCTTC 1 cut(s) 578
BspT104I TTCGAA 1 cut(s) 206
BsrDI GCAATG 1 cut(s) 505
BsrFI RCCGGY 2 cut(s) 56, 508
BsrGI TGTACA 1 cut(s) 513
BsrI ACTGG 1 cut(s) 752
BssAI RCCGGY 2 cut(s) 56, 508
BssMI GATC 2 cut(s) 104, 230
BssNAI GTATAC 1 cut(s) 440
Bst1107I GTATAC 1 cut(s) 440
Bst2UI CCWGG 1 cut(s) 138
Bst4CI ACNGT 1 cut(s) 532
Bst6I CTCTTC 3 cut(s) 213, 342, 578
BstAUI TGTACA 1 cut(s) 513
BstBAI YACGTR 1 cut(s) 605
BstBI TTCGAA 1 cut(s) 206
BstC8I GCNNGC 3 cut(s) 185, 544, 600
BstDEI CTNAG 1 cut(s) 267
BstEII GGTNACC 1 cut(s) 239
BstF5I GGATG 4 cut(s) 31, 185, 708, 740
BstKTI GATC 2 cut(s) 107, 233
BstMAI GTCTC 1 cut(s) 668
BstMBI GATC 2 cut(s) 104, 230
BstMWI GCNNNNNNNGC 1 cut(s) 595
BstNI CCWGG 1 cut(s) 138
BstNSI RCATGY 1 cut(s) 563
BstPI GGTNACC 1 cut(s) 239
BstSCI CCNGG 2 cut(s) 85, 136
BstX2I RGATCY 1 cut(s) 104
BstYI RGATCY 1 cut(s) 104
BstZ17I GTATAC 1 cut(s) 440
BtsCI GGATG 4 cut(s) 31, 185, 708, 740
Cac8I GCNNGC 3 cut(s) 185, 544, 600
CaiI CAGNNNCTG 1 cut(s) 758
Cfr10I RCCGGY 2 cut(s) 56, 508
Csp6I GTAC 2 cut(s) 514, 693
CspAI ACCGGT 2 cut(s) 56, 508
CviAII CATG 4 cut(s) 41, 547, 560, 652
CviJI RGCY 8 cut(s) 90, 317, 329, 340, 386, 419, 571, 661
CviKI_1 RGCY 8 cut(s) 90, 317, 329, 340, 386, 419, 571, 661
CviQI GTAC 2 cut(s) 514, 693
DdeI CTNAG 1 cut(s) 267
DpnI GATC 2 cut(s) 106, 232
DpnII GATC 2 cut(s) 104, 230
Eam1104I CTCTTC 3 cut(s) 213, 342, 578
EarI CTCTTC 3 cut(s) 213, 342, 578
Eco24I GRGCYC 1 cut(s) 342
Eco57I CTGAAG 1 cut(s) 441
Eco88I CYCGRG 1 cut(s) 443
Eco91I GGTNACC 1 cut(s) 239
EcoO65I GGTNACC 1 cut(s) 239
EcoRII CCWGG 1 cut(s) 136
EcoT38I GRGCYC 1 cut(s) 342
FaeI CATG 4 cut(s) 44, 550, 563, 655
FaiI YATR 8 cut(s) 42, 440, 491, 548, 561, 615, 653, 746
FatI CATG 4 cut(s) 40, 546, 559, 651
FauI CCCGC 2 cut(s) 192, 582
FblI GTMKAC 1 cut(s) 439
FokI GGATG 4 cut(s) 38, 192, 715, 727
FriOI GRGCYC 1 cut(s) 342
FspBI CTAG 5 cut(s) 383, 393, 543, 599, 678
HapII CCGG 4 cut(s) 57, 87, 435, 509
Hin1II CATG 4 cut(s) 44, 550, 563, 655
HincII GTYRAC 1 cut(s) 143
HindII GTYRAC 1 cut(s) 143
HinfI GANTC 4 cut(s) 44, 263, 294, 358
HpaII CCGG 4 cut(s) 57, 87, 435, 509
HphI GGTGA 2 cut(s) 84, 323
Hpy166II GTNNAC 3 cut(s) 143, 440, 514
Hpy188I TCNGA 1 cut(s) 718
Hpy188III TCNNGA 3 cut(s) 228, 234, 445
Hpy8I GTNNAC 3 cut(s) 143, 440, 514
HpyAV CCTTC 2 cut(s) 202, 398
HpyCH4III ACNGT 1 cut(s) 532
HpyCH4IV ACGT 1 cut(s) 604
HpyCH4V TGCA 2 cut(s) 13, 414
HpyF10VI GCNNNNNNNGC 1 cut(s) 595
HpyF3I CTNAG 1 cut(s) 267
HpySE526I ACGT 1 cut(s) 604
Hsp92II CATG 4 cut(s) 44, 550, 563, 655
Kzo9I GATC 2 cut(s) 104, 230
LguI GCTCTTC 1 cut(s) 578
LmnI GCTCC 1 cut(s) 337
LpnPI CCDG 9 cut(s) 70, 93, 100, 123, 150, 350, 448, 522, 765
LweI GCATC 2 cut(s) 170, 529
MaeI CTAG 5 cut(s) 383, 393, 543, 599, 678
MaeII ACGT 1 cut(s) 604
MaeIII GTNAC 4 cut(s) 113, 239, 526, 634
MalI GATC 2 cut(s) 106, 232
MboI GATC 2 cut(s) 104, 230
MboII GAAGA 5 cut(s) 230, 303, 356, 359, 565
MfeI CAATTG 1 cut(s) 630
MflI RGATCY 1 cut(s) 104
MhlI GDGCHC 1 cut(s) 342
MluCI AATT 4 cut(s) 486, 517, 577, 630
MlyI GAGTC 1 cut(s) 53
MroXI GAANNNNTTC 1 cut(s) 202
MseI TTAA 1 cut(s) 251
MslI CAYNNNNRTG 1 cut(s) 650
MspI CCGG 4 cut(s) 57, 87, 435, 509
MspR9I CCNGG 2 cut(s) 87, 138
MunI CAATTG 1 cut(s) 630
MvaI CCWGG 1 cut(s) 138
MwoI GCNNNNNNNGC 1 cut(s) 595
NciI CCSGG 1 cut(s) 87
NdeII GATC 2 cut(s) 104, 230
NheI GCTAGC 2 cut(s) 542, 598
NlaIII CATG 4 cut(s) 44, 550, 563, 655
NlaIV GGNNCC 2 cut(s) 339, 710
NmuCI GTSAC 3 cut(s) 113, 526, 634
NspI RCATGY 1 cut(s) 563
NspV TTCGAA 1 cut(s) 206
PciI ACATGT 1 cut(s) 559
PciSI GCTCTTC 1 cut(s) 578
PdmI GAANNNNTTC 1 cut(s) 202
PfeI GAWTC 3 cut(s) 263, 294, 358
PflMI CCANNNNNTGG 1 cut(s) 657
PinAI ACCGGT 2 cut(s) 56, 508
PleI GAGTC 1 cut(s) 52
PpsI GAGTC 1 cut(s) 52
Ppu21I YACGTR 1 cut(s) 605
PscI ACATGT 1 cut(s) 559
Psp6I CCWGG 1 cut(s) 136
PspEI GGTNACC 1 cut(s) 239
PspGI CCWGG 1 cut(s) 136
PspN4I GGNNCC 2 cut(s) 339, 710
PstNI CAGNNNCTG 1 cut(s) 758
PsuI RGATCY 1 cut(s) 104
RsaI GTAC 2 cut(s) 515, 694
RsaNI GTAC 2 cut(s) 514, 693
RseI CAYNNNNRTG 1 cut(s) 650
SapI GCTCTTC 1 cut(s) 578
SaqAI TTAA 1 cut(s) 251
Sau3AI GATC 2 cut(s) 104, 230
SchI GAGTC 1 cut(s) 53
ScrFI CCNGG 2 cut(s) 87, 138
SduI GDGCHC 1 cut(s) 342
SfaNI GCATC 2 cut(s) 170, 529
SfuI TTCGAA 1 cut(s) 206
SgrAI CRCCGGYG 1 cut(s) 56
SmiMI CAYNNNNRTG 1 cut(s) 650
Sse9I AATT 4 cut(s) 486, 517, 577, 630
SsiI CCGC 3 cut(s) 185, 589, 735
SspMI CTAG 5 cut(s) 383, 393, 543, 599, 678
StyD4I CCNGG 2 cut(s) 85, 136
TaaI ACNGT 1 cut(s) 532
TaiI ACGT 1 cut(s) 607
TaqI TCGA 1 cut(s) 206
TasI AATT 4 cut(s) 486, 517, 577, 630
TatI WGTACW 1 cut(s) 513
TfiI GAWTC 3 cut(s) 263, 294, 358
Tru1I TTAA 1 cut(s) 251
Tru9I TTAA 1 cut(s) 251
TseFI GTSAC 3 cut(s) 113, 526, 634
Tsp45I GTSAC 3 cut(s) 113, 526, 634
TspDTI ATGAA 5 cut(s) 42, 276, 417, 668, 755
Van91I CCANNNNNTGG 1 cut(s) 657
XceI RCATGY 1 cut(s) 563
XmiI GTMKAC 1 cut(s) 439
XmnI GAANNNNTTC 1 cut(s) 202
XspI CTAG 5 cut(s) 383, 393, 543, 599, 678
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.