Rmu_ssc0000291.1_g000011

Protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000291.1
OG0000252
Physical Location & Seq
Forward (+)
58119 .. 58952
834 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000291.1_g000011.1.cds

Sequence Viewer

Length: 741 bp
atggaacgattgtccaacgaatcagagaacattattctcactaatgatcaaggaacagtggatgattcaccaaagagtttagagaataatcaagaaattaaggtggaagaaataatgcaagtgcccagtgttgagatgagttttgattctattgatgaggcatatgactattatagaaaatatgggaagcaattgggattcccagtgagaaagagaacatcaagaaagggagatgatgggaacacaaaatatataactatttcatgcggtcgagccggaaaatttaaaagcaagtccagtaactctctaaagccgcatccaagtgtgaagactgattgcaagacacttattagacttggtaaatcccttgatggaaagtggaaaatcaattctacaaagcttgagcataaccatggtttgagtccaagaaaatctcgttatttctcaaccaatagtgaactaagttcatcgataaaaaggagacttgaactaaatgatgttgctagaatagggttaaacaagagttataactcaattgttgttgaagctcaaggatatgacaatgtgtcatttttggaaaaagatgctcaaaatcacattgaaaaaattaggcgattgcggctcaaggaaggtgatgctactgcagttaatacctactttttggatatgcaagataagattgctagtttcttctatgccattgctataaatgaaaagggtagattgagaaatttgttttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

246

Amino Acids

28.12

Weight (kDa)

9.36

Isoelectric Point (pI)

42.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000252)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80010
fragaria_vesca FvH4_2g24400 FvH4_2g24401 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_3g17011 FvH4_4g07801 FvH4_6g23211 FvH4_6g29411 FvH4_6g29411 FvH4_6g29411 FvH4_6g29432 FvH4_6g29432 FvH4_7g19111
malus_domestica MD05G1027500.v1.1 MD08G1156300.v1.1 MD15G1127000.v1.1 MD17G1214400.v1.1 MD17G1214600.v1.1
prunus_persica Prupe.1G268400_v2.0.a1 Prupe.1G482700_v2.0.a1 Prupe.2G013600_v2.0.a1 Prupe.2G072300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090500_v2.0.a1 Prupe.4G256500_v2.0.a1 Prupe.6G116200_v2.0.a1 Prupe.7G015200_v2.0.a1 Prupe.8G014900_v2.0.a1
pyrus_communis pycom05g24990 pycom12g03510 pycom16g12560 pycom17g21900 pycom17g21920
rosa_chinensis RchiOBHm_Chr2g0134881 RchiOBHm_Chr2g0134921 RchiOBHm_Chr6g0297621
rosa_laevigata RLG00000011576 RLG00000012728 RLG00000013853 RLG00000014630 RLG00000019427 RLG00000019430 RLG00000020625
rosa_multiflora Rmu_sc0001385.1_g000003 Rmu_sc0001541.1_g000005 Rmu_sc0001719.1_g000010 Rmu_sc0001719.1_g000011 Rmu_sc0002283.1_g000033 Rmu_sc0004350.1_g000004 Rmu_sc0004350.1_g000005 Rmu_sc0004406.1_g000014 Rmu_sc0004564.1_g000003 Rmu_sc0005198.1_g000003 Rmu_sc0005198.1_g000004 Rmu_sc0005198.1_g000005 Rmu_sc0023742.1_g000001 Rmu_sc0023743.1_g000001 Rmu_ssc0000291.1_g000011 Rmu_ssc0000291.1_g000012
rosa_roxburghii Rroxscaffold_2G00109640 Rroxscaffold_2G00109680 Rroxscaffold_2G00114370 Rroxscaffold_2G00135950 Rroxscaffold_3G00225840 Rroxscaffold_3G00227000 Rroxscaffold_7G00170310 Rroxscaffold_7G00172860 Rroxscaffold_7G00179400 Rroxscaffold_7G00198760
rosa_rugosa Rorug02G0321200 Rorug06G0274600 Rorug06G0274700 Rorug06G0274800 Rorug06G0274800 Rorug07G0274900 Rorug07G0275000 Rorug07G0340400
rosa_samantha Rh2AG372600 Rh2AG373100 Rh2BG044500 Rh2BG378300 Rh2BG378700 Rh2CG315500 Rh2CG356800 Rh2CG357600 Rh2DG395100 Rh2DG395500 Rh2DG586300 Rh3BG359900 Rh4BG117400 Rh4BG117500 Rh4DG152400 Rh4DG152500 Rh6AG165100 Rh6AG385200 Rh6BG170300 Rh6BG170400 Rh6BG170500 Rh6BG173200 Rh6BG173300 Rh6BG208000 Rh6BG208100 Rh6BG393300 Rh6CG163800 Rh6CG163900 Rh6CG164000 Rh6CG167300 Rh6CG241900 Rh6CG399100 Rh6DG159100 Rh6DG159200 Rh6DG233500 Rh6DG385700 Rh7AG495200 Rh7AG495300 Rh7BG402900 Rh7BG466600 Rh7BG466700 Rh7DG479900
rosa_wichuraiana Rw0G005930 Rw1G039690 Rw2G030340 Rw2G030400 Rw4G013030 Rw4G013040 Rw5G023130 Rw6G014200 Rw6G014280 Rw6G033560 Rw7G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 528
AciI CCGC 3 cut(s) 267, 314, 619
AcsI RAATTY 2 cut(s) 281, 730
AgsI TTSAA 3 cut(s) 488, 545, 602
AhdI GACNNNNNGTC 1 cut(s) 565
AluBI AGCT 2 cut(s) 400, 548
AluI AGCT 2 cut(s) 400, 548
Alw26I GTCTC 1 cut(s) 475
ApoI RAATTY 2 cut(s) 281, 730
AsuHPI GGTGA 2 cut(s) 60, 644
BaeGI GKGCMC 1 cut(s) 126
BbsI GAAGAC 1 cut(s) 335
BccI CCATC 2 cut(s) 230, 365
BclI TGATCA 1 cut(s) 46
BcoDI GTCTC 1 cut(s) 475
BfaI CTAG 2 cut(s) 504, 684
BfmI CTRYAG 1 cut(s) 642
BisI GCNGC 2 cut(s) 314, 620
BlsI GCNGC 2 cut(s) 315, 621
BmeRI GACNNNNNGTC 1 cut(s) 565
BmrI ACTGGG 2 cut(s) 120, 197
BmsI GCATC 3 cut(s) 325, 574, 625
BmuI ACTGGG 2 cut(s) 120, 197
BpiI GAAGAC 1 cut(s) 335
BpuEI CTTGAG 3 cut(s) 422, 534, 608
Bsa29I ATCGAT 1 cut(s) 470
BsaJI CCNNGG 1 cut(s) 412
Bse1I ACTGG 3 cut(s) 126, 203, 297
Bse3DI GCAATG 1 cut(s) 699
BseCI ATCGAT 1 cut(s) 470
BseDI CCNNGG 1 cut(s) 412
BseGI GGATG 2 cut(s) 67, 316
BseMI GCAATG 1 cut(s) 699
BseNI ACTGG 3 cut(s) 126, 203, 297
BseSI GKGCMC 1 cut(s) 126
Bsh1285I CGRYCG 1 cut(s) 271
BshVI ATCGAT 1 cut(s) 470
BsiEI CGRYCG 1 cut(s) 271
BsiSI CCGG 1 cut(s) 276
BsmAI GTCTC 1 cut(s) 475
Bsp1286I GDGCHC 1 cut(s) 126
Bsp143I GATC 1 cut(s) 46
Bsp19I CCATGG 1 cut(s) 412
BspACI CCGC 3 cut(s) 267, 314, 619
BspDI ATCGAT 1 cut(s) 470
BspMAI CTGCAG 1 cut(s) 646
BsrDI GCAATG 1 cut(s) 699
BsrI ACTGG 3 cut(s) 126, 203, 297
BssECI CCNNGG 1 cut(s) 412
BssMI GATC 1 cut(s) 46
BssT1I CCWWGG 1 cut(s) 412
Bst4CI ACNGT 1 cut(s) 58
BstDEI CTNAG 1 cut(s) 461
BstDSI CCRYGG 1 cut(s) 412
BstF5I GGATG 2 cut(s) 67, 316
BstKTI GATC 1 cut(s) 49
BstMAI GTCTC 1 cut(s) 475
BstMBI GATC 1 cut(s) 46
BstMCI CGRYCG 1 cut(s) 271
BstMWI GCNNNNNNNGC 1 cut(s) 619
BstSFI CTRYAG 1 cut(s) 642
BstSLI GKGCMC 1 cut(s) 126
BstV2I GAAGAC 1 cut(s) 335
Bsu15I ATCGAT 1 cut(s) 470
BsuTUI ATCGAT 1 cut(s) 470
BtgI CCRYGG 1 cut(s) 412
BtsCI GGATG 2 cut(s) 67, 316
BtsIMutI CAGTG 3 cut(s) 63, 133, 210
ClaI ATCGAT 1 cut(s) 470
CviAII CATG 2 cut(s) 264, 413
CviJI RGCY 5 cut(s) 275, 313, 400, 548, 622
CviKI_1 RGCY 5 cut(s) 275, 313, 400, 548, 622
DdeI CTNAG 1 cut(s) 461
DpnI GATC 1 cut(s) 48
DpnII GATC 1 cut(s) 46
DraI TTTAAA 1 cut(s) 286
DriI GACNNNNNGTC 1 cut(s) 565
Eam1105I GACNNNNNGTC 1 cut(s) 565
Eco130I CCWWGG 1 cut(s) 412
EcoT14I CCWWGG 1 cut(s) 412
ErhI CCWWGG 1 cut(s) 412
FaeI CATG 2 cut(s) 267, 416
FatI CATG 2 cut(s) 263, 412
FauNDI CATATG 1 cut(s) 163
FbaI TGATCA 1 cut(s) 46
Fnu4HI GCNGC 2 cut(s) 314, 620
FokI GGATG 2 cut(s) 74, 303
Fsp4HI GCNGC 2 cut(s) 314, 620
FspBI CTAG 2 cut(s) 504, 684
GluI GCNGC 2 cut(s) 314, 620
HapII CCGG 1 cut(s) 276
Hin1II CATG 2 cut(s) 267, 416
HindIII AAGCTT 1 cut(s) 398
HinfI GANTC 5 cut(s) 20, 65, 146, 198, 421
HpaII CCGG 1 cut(s) 276
HphI GGTGA 2 cut(s) 60, 644
Hpy166II GTNNAC 1 cut(s) 458
Hpy188I TCNGA 1 cut(s) 25
Hpy188III TCNNGA 2 cut(s) 92, 222
Hpy8I GTNNAC 1 cut(s) 458
HpyAV CCTTC 1 cut(s) 623
HpyCH4III ACNGT 1 cut(s) 58
HpyCH4V TGCA 4 cut(s) 118, 339, 644, 670
HpyF10VI GCNNNNNNNGC 1 cut(s) 619
HpyF3I CTNAG 1 cut(s) 461
Hsp92II CATG 2 cut(s) 267, 416
Ksp22I TGATCA 1 cut(s) 46
Kzo9I GATC 1 cut(s) 46
LpnPI CCDG 4 cut(s) 139, 216, 289, 310
LweI GCATC 3 cut(s) 325, 574, 625
MaeI CTAG 2 cut(s) 504, 684
MaeIII GTNAC 1 cut(s) 299
MalI GATC 1 cut(s) 48
MboI GATC 1 cut(s) 46
MboII GAAGA 3 cut(s) 119, 340, 682
MfeI CAATTG 2 cut(s) 191, 534
MhlI GDGCHC 1 cut(s) 126
MluCI AATT 7 cut(s) 96, 191, 281, 388, 534, 606, 730
MlyI GAGTC 1 cut(s) 430
MmeI TCCRAC 1 cut(s) 39
MnlI CCTC 1 cut(s) 151
MseI TTAA 4 cut(s) 99, 285, 515, 648
MslI CAYNNNNRTG 2 cut(s) 321, 411
MspI CCGG 1 cut(s) 276
MunI CAATTG 2 cut(s) 191, 534
MwoI GCNNNNNNNGC 1 cut(s) 619
NcoI CCATGG 1 cut(s) 412
NdeI CATATG 1 cut(s) 163
NdeII GATC 1 cut(s) 46
NlaIII CATG 2 cut(s) 267, 416
PfeI GAWTC 4 cut(s) 20, 65, 146, 198
PkrI GCNGC 2 cut(s) 315, 621
PleI GAGTC 1 cut(s) 429
PpsI GAGTC 1 cut(s) 429
PsiI TTATAA 1 cut(s) 528
PstI CTGCAG 1 cut(s) 646
RseI CAYNNNNRTG 2 cut(s) 321, 411
SaqAI TTAA 4 cut(s) 99, 285, 515, 648
SatI GCNGC 2 cut(s) 314, 620
Sau3AI GATC 1 cut(s) 46
SchI GAGTC 1 cut(s) 430
SduI GDGCHC 1 cut(s) 126
SetI ASST 5 cut(s) 105, 402, 550, 634, 656
SfaNI GCATC 3 cut(s) 325, 574, 625
SfcI CTRYAG 1 cut(s) 642
SmiMI CAYNNNNRTG 2 cut(s) 321, 411
SmlI CTYRAG 3 cut(s) 401, 549, 623
SmoI CTYRAG 3 cut(s) 401, 549, 623
Sse9I AATT 7 cut(s) 96, 191, 281, 388, 534, 606, 730
SsiI CCGC 3 cut(s) 267, 314, 619
SspMI CTAG 2 cut(s) 504, 684
StyI CCWWGG 1 cut(s) 412
TaaI ACNGT 1 cut(s) 58
TaqI TCGA 2 cut(s) 271, 470
TasI AATT 7 cut(s) 96, 191, 281, 388, 534, 606, 730
TauI GCSGC 2 cut(s) 316, 622
TfiI GAWTC 4 cut(s) 20, 65, 146, 198
Tru1I TTAA 4 cut(s) 99, 285, 515, 648
Tru9I TTAA 4 cut(s) 99, 285, 515, 648
TscAI CASTG 3 cut(s) 63, 133, 210
TspDTI ATGAA 3 cut(s) 252, 456, 726
TspRI CASTG 3 cut(s) 63, 133, 210
XapI RAATTY 2 cut(s) 281, 730
XspI CTAG 2 cut(s) 504, 684
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.