Rw4G013040

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0000252
Physical Location & Seq
Forward (+)
30548682 .. 30553298
4617 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G013040.1

Sequence Viewer

Length: 501 bp
ATGGGATTTGGTCAAAAAGCGTGGCGTAATGTACGGAAAGATCTGTTGCAAGAACTACAAAGCATGCCTTCCTTATATAAAGATCTTATATACGGGCCTAGACAATATTTTGAGCTTAAGCATGCACTGAATTTTAATAAGAATGGTTATGCAAAGAAAGAGTATTGGACGAGCATGCCAGATATGGGGTATCTAATTGCCACATATTATAAAGTGGTGGTGATCCATTTATCTAATGTACAATGTATTACTCTTCTTATATTGATGTCTGAACAGCATGACATTGAGTTACCTGAGATTGCCATTGGCTTTGTCAAGATAGGGAATAAAGGGCATTTTGTACAGTGGCACATGCACAATGATGAAACTACACAACACTTATACCAAGCCCGTGAAGAGCAATTCAAACAAGTATTTTGGAGTGTGGATATTGTTTGTGCAACAAAAACAGAAAGAGAAATTATGGATCTTGACTATGATTCATTACATGAAAAGTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE

Protein Analysis

166

Amino Acids

19.7

Weight (kDa)

6.23

Isoelectric Point (pI)

45.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000252)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80010
fragaria_vesca FvH4_2g24400 FvH4_2g24401 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_3g17011 FvH4_4g07801 FvH4_6g23211 FvH4_6g29411 FvH4_6g29411 FvH4_6g29411 FvH4_6g29432 FvH4_6g29432 FvH4_7g19111
malus_domestica MD05G1027500.v1.1 MD08G1156300.v1.1 MD15G1127000.v1.1 MD17G1214400.v1.1 MD17G1214600.v1.1
prunus_persica Prupe.1G268400_v2.0.a1 Prupe.1G482700_v2.0.a1 Prupe.2G013600_v2.0.a1 Prupe.2G072300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090500_v2.0.a1 Prupe.4G256500_v2.0.a1 Prupe.6G116200_v2.0.a1 Prupe.7G015200_v2.0.a1 Prupe.8G014900_v2.0.a1
pyrus_communis pycom05g24990 pycom12g03510 pycom16g12560 pycom17g21900 pycom17g21920
rosa_chinensis RchiOBHm_Chr2g0134881 RchiOBHm_Chr2g0134921 RchiOBHm_Chr6g0297621
rosa_laevigata RLG00000011576 RLG00000012728 RLG00000013853 RLG00000014630 RLG00000019427 RLG00000019430 RLG00000020625
rosa_multiflora Rmu_sc0001385.1_g000003 Rmu_sc0001541.1_g000005 Rmu_sc0001719.1_g000010 Rmu_sc0001719.1_g000011 Rmu_sc0002283.1_g000033 Rmu_sc0004350.1_g000004 Rmu_sc0004350.1_g000005 Rmu_sc0004406.1_g000014 Rmu_sc0004564.1_g000003 Rmu_sc0005198.1_g000003 Rmu_sc0005198.1_g000004 Rmu_sc0005198.1_g000005 Rmu_sc0023742.1_g000001 Rmu_sc0023743.1_g000001 Rmu_ssc0000291.1_g000011 Rmu_ssc0000291.1_g000012
rosa_roxburghii Rroxscaffold_2G00109640 Rroxscaffold_2G00109680 Rroxscaffold_2G00114370 Rroxscaffold_2G00135950 Rroxscaffold_3G00225840 Rroxscaffold_3G00227000 Rroxscaffold_7G00170310 Rroxscaffold_7G00172860 Rroxscaffold_7G00179400 Rroxscaffold_7G00198760
rosa_rugosa Rorug02G0321200 Rorug06G0274600 Rorug06G0274700 Rorug06G0274800 Rorug06G0274800 Rorug07G0274900 Rorug07G0275000 Rorug07G0340400
rosa_samantha Rh2AG372600 Rh2AG373100 Rh2BG044500 Rh2BG378300 Rh2BG378700 Rh2CG315500 Rh2CG356800 Rh2CG357600 Rh2DG395100 Rh2DG395500 Rh2DG586300 Rh3BG359900 Rh4BG117400 Rh4BG117500 Rh4DG152400 Rh4DG152500 Rh6AG165100 Rh6AG385200 Rh6BG170300 Rh6BG170400 Rh6BG170500 Rh6BG173200 Rh6BG173300 Rh6BG208000 Rh6BG208100 Rh6BG393300 Rh6CG163800 Rh6CG163900 Rh6CG164000 Rh6CG167300 Rh6CG241900 Rh6CG399100 Rh6DG159100 Rh6DG159200 Rh6DG233500 Rh6DG385700 Rh7AG495200 Rh7AG495300 Rh7BG402900 Rh7BG466600 Rh7BG466700 Rh7DG479900
rosa_wichuraiana Rw0G005930 Rw1G039690 Rw2G030340 Rw2G030400 Rw4G013030 Rw4G013040 Rw5G023130 Rw6G014200 Rw6G014280 Rw6G033560 Rw7G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 210
AclWI GGATC 2 cut(s) 217, 474
AcsI RAATTY 1 cut(s) 130
AfaI GTAC 3 cut(s) 33, 240, 342
AfiI CCNNNNNNNGG 1 cut(s) 185
AflII CTTAAG 1 cut(s) 116
AgsI TTSAA 1 cut(s) 406
AluBI AGCT 1 cut(s) 115
AluI AGCT 1 cut(s) 115
AlwI GGATC 2 cut(s) 217, 474
AoxI GGCC 1 cut(s) 95
ApoI RAATTY 1 cut(s) 130
AspS9I GGNCC 1 cut(s) 95
AsuHPI GGTGA 1 cut(s) 232
BfaI CTAG 2 cut(s) 99, 499
BfrI CTTAAG 1 cut(s) 116
BglII AGATCT 2 cut(s) 40, 82
BmgT120I GGNCC 1 cut(s) 95
Bsc4I CCNNNNNNNGG 1 cut(s) 185
BseLI CCNNNNNNNGG 1 cut(s) 185
BseMII CTCAG 1 cut(s) 285
BshFI GGCC 1 cut(s) 97
BslI CCNNNNNNNGG 1 cut(s) 185
BsnI GGCC 1 cut(s) 97
Bsp1407I TGTACA 2 cut(s) 238, 340
Bsp143I GATC 4 cut(s) 40, 82, 222, 466
BspANI GGCC 1 cut(s) 97
BspCNI CTCAG 1 cut(s) 286
BspPI GGATC 2 cut(s) 217, 474
BspQI GCTCTTC 1 cut(s) 390
BspTI CTTAAG 1 cut(s) 116
BsrGI TGTACA 2 cut(s) 238, 340
BssMI GATC 4 cut(s) 40, 82, 222, 466
Bst4CI ACNGT 1 cut(s) 345
Bst6I CTCTTC 2 cut(s) 258, 390
BstAFI CTTAAG 1 cut(s) 116
BstAUI TGTACA 2 cut(s) 238, 340
BstC8I GCNNGC 3 cut(s) 65, 123, 176
BstDEI CTNAG 1 cut(s) 294
BstKTI GATC 4 cut(s) 43, 85, 225, 469
BstMBI GATC 4 cut(s) 40, 82, 222, 466
BstNSI RCATGY 4 cut(s) 67, 125, 178, 355
BstX2I RGATCY 3 cut(s) 40, 82, 466
BstYI RGATCY 3 cut(s) 40, 82, 466
BsuRI GGCC 1 cut(s) 97
BtsIMutI CAGTG 2 cut(s) 125, 350
Cac8I GCNNGC 3 cut(s) 65, 123, 176
Cfr13I GGNCC 1 cut(s) 95
Csp6I GTAC 3 cut(s) 32, 239, 341
CspCI CAANNNNNGTGG 1 cut(s) 37
CviAII CATG 6 cut(s) 64, 122, 175, 278, 352, 488
CviJI RGCY 4 cut(s) 97, 115, 309, 389
CviKI_1 RGCY 4 cut(s) 97, 115, 309, 389
CviQI GTAC 3 cut(s) 32, 239, 341
DdeI CTNAG 1 cut(s) 294
DpnI GATC 4 cut(s) 42, 84, 224, 468
DpnII GATC 4 cut(s) 40, 82, 222, 466
Eam1104I CTCTTC 2 cut(s) 258, 390
EarI CTCTTC 2 cut(s) 258, 390
FaeI CATG 6 cut(s) 67, 125, 178, 281, 355, 491
FalI AAGNNNNNCTT 2 cut(s) 52, 84
FatI CATG 6 cut(s) 63, 121, 174, 277, 351, 487
FspBI CTAG 2 cut(s) 99, 499
HaeIII GGCC 1 cut(s) 97
Hin1II CATG 6 cut(s) 67, 125, 178, 281, 355, 491
HinfI GANTC 1 cut(s) 479
HphI GGTGA 1 cut(s) 232
Hpy188I TCNGA 1 cut(s) 271
Hpy188III TCNNGA 2 cut(s) 316, 470
HpyAV CCTTC 1 cut(s) 78
HpyCH4III ACNGT 1 cut(s) 345
HpyCH4V TGCA 5 cut(s) 49, 125, 152, 355, 440
HpyF3I CTNAG 1 cut(s) 294
Hsp92II CATG 6 cut(s) 67, 125, 178, 281, 355, 491
Kzo9I GATC 4 cut(s) 40, 82, 222, 466
LguI GCTCTTC 1 cut(s) 390
LpnPI CCDG 2 cut(s) 192, 306
MaeI CTAG 2 cut(s) 99, 499
MaeIII GTNAC 1 cut(s) 288
MalI GATC 4 cut(s) 42, 84, 224, 468
MboI GATC 4 cut(s) 40, 82, 222, 466
MboII GAAGA 2 cut(s) 245, 407
MflI RGATCY 3 cut(s) 40, 82, 466
MluCI AATT 4 cut(s) 130, 195, 401, 459
MseI TTAA 2 cut(s) 117, 135
MslI CAYNNNNRTG 1 cut(s) 360
MspCI CTTAAG 1 cut(s) 116
NdeII GATC 4 cut(s) 40, 82, 222, 466
NlaIII CATG 6 cut(s) 67, 125, 178, 281, 355, 491
NspI RCATGY 4 cut(s) 67, 125, 178, 355
PaeI GCATGC 3 cut(s) 67, 125, 178
PciSI GCTCTTC 1 cut(s) 390
PfeI GAWTC 1 cut(s) 479
PsiI TTATAA 1 cut(s) 210
PspPI GGNCC 1 cut(s) 95
PsuI RGATCY 3 cut(s) 40, 82, 466
RsaI GTAC 3 cut(s) 33, 240, 342
RsaNI GTAC 3 cut(s) 32, 239, 341
RseI CAYNNNNRTG 1 cut(s) 360
SapI GCTCTTC 1 cut(s) 390
SaqAI TTAA 2 cut(s) 117, 135
Sau3AI GATC 4 cut(s) 40, 82, 222, 466
Sau96I GGNCC 1 cut(s) 95
SetI ASST 2 cut(s) 117, 295
SmiMI CAYNNNNRTG 1 cut(s) 360
SmlI CTYRAG 1 cut(s) 116
SmoI CTYRAG 1 cut(s) 116
SphI GCATGC 3 cut(s) 67, 125, 178
Sse9I AATT 4 cut(s) 130, 195, 401, 459
SspI AATATT 1 cut(s) 107
SspMI CTAG 2 cut(s) 99, 499
TaaI ACNGT 1 cut(s) 345
TasI AATT 4 cut(s) 130, 195, 401, 459
TatI WGTACW 2 cut(s) 238, 340
TfiI GAWTC 1 cut(s) 479
Tru1I TTAA 2 cut(s) 117, 135
Tru9I TTAA 2 cut(s) 117, 135
TscAI CASTG 2 cut(s) 132, 350
TspDTI ATGAA 2 cut(s) 378, 471
TspGWI ACGGA 1 cut(s) 49
TspRI CASTG 2 cut(s) 132, 350
Vha464I CTTAAG 1 cut(s) 116
XapI RAATTY 1 cut(s) 130
XceI RCATGY 4 cut(s) 67, 125, 178, 355
XspI CTAG 2 cut(s) 99, 499
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.