Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000252

Physical Location & Seq

Genomic Coordinates Reverse (-)

18984150 .. 18988210

Gene Structure 4061 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00179400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGCAGCACGAAAACCAAGAACTCTACCGCTTTCTTGCCCAAAACGGCTTAATCAACGGTCATCCCTATGGATCATTTCCCGGCGGAGTAGCTAATTGTGAGTTCTCATCTTCGGCTTCACTGTTCCTATGCGGCACGGCTTTTGCGGCTCCTCCTCTTATTACGGAGGCGTTTTCGCCGCTTGAATTGAGCATTAAGAAAGCTGCTAGGGACTTTGAGTGTTCTGGGCGGGGTCTAAGAATAGAGGAAATCTTGTTGAAATTGGGTGGTGGTGACAAGAATGATAAAGATCAGACCATCGGATTCTGGATTTCTAACACCTTGGGTTTGCAACATGTTGTCCTTGTAGGATTAAGGCTTTTTTGTGCCATATTGTGTTGGGAGCATCTCTCTAGTAGTTCTGGGTGTGGGAAGCACTGCCCTTCGGTAAATTTGTCATCAGGGTTAATACCTATACCACCAATTTCAAGTGAGTGGCATGTGCACAATTATGAAACTGCACAACACTTGTGCCTTAGATACCAAGCTAGTGAAGAAAAATTCAAACAAGTATTTCAAAGTGCGGATATTGTTTGTGCAACAGAAACAAAAATTGTAGATCTACACAATGATTCATTACATGAAAAGTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009651 GO:0009889 GO:0009941 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031967 GO:0031975 GO:0042221 GO:0042493 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

210

Amino Acids

23.09

Weight (kDa)

5.9

Isoelectric Point (pI)

40.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000252)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80010
fragaria_vesca	FvH4_2g24400 FvH4_2g24401 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_3g17011 FvH4_4g07801 FvH4_6g23211 FvH4_6g29411 FvH4_6g29411 FvH4_6g29411 FvH4_6g29432 FvH4_6g29432 FvH4_7g19111
malus_domestica	MD05G1027500.v1.1 MD08G1156300.v1.1 MD15G1127000.v1.1 MD17G1214400.v1.1 MD17G1214600.v1.1
prunus_persica	Prupe.1G268400_v2.0.a1 Prupe.1G482700_v2.0.a1 Prupe.2G013600_v2.0.a1 Prupe.2G072300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090500_v2.0.a1 Prupe.4G256500_v2.0.a1 Prupe.6G116200_v2.0.a1 Prupe.7G015200_v2.0.a1 Prupe.8G014900_v2.0.a1
pyrus_communis	pycom05g24990 pycom12g03510 pycom16g12560 pycom17g21900 pycom17g21920
rosa_chinensis	RchiOBHm_Chr2g0134881 RchiOBHm_Chr2g0134921 RchiOBHm_Chr6g0297621
rosa_laevigata	RLG00000011576 RLG00000012728 RLG00000013853 RLG00000014630 RLG00000019427 RLG00000019430 RLG00000020625
rosa_multiflora	Rmu_sc0001385.1_g000003 Rmu_sc0001541.1_g000005 Rmu_sc0001719.1_g000010 Rmu_sc0001719.1_g000011 Rmu_sc0002283.1_g000033 Rmu_sc0004350.1_g000004 Rmu_sc0004350.1_g000005 Rmu_sc0004406.1_g000014 Rmu_sc0004564.1_g000003 Rmu_sc0005198.1_g000003 Rmu_sc0005198.1_g000004 Rmu_sc0005198.1_g000005 Rmu_sc0023742.1_g000001 Rmu_sc0023743.1_g000001 Rmu_ssc0000291.1_g000011 Rmu_ssc0000291.1_g000012
rosa_roxburghii	Rroxscaffold_2G00109640 Rroxscaffold_2G00109680 Rroxscaffold_2G00114370 Rroxscaffold_2G00135950 Rroxscaffold_3G00225840 Rroxscaffold_3G00227000 Rroxscaffold_7G00170310 Rroxscaffold_7G00172860 Rroxscaffold_7G00179400 Rroxscaffold_7G00198760
rosa_rugosa	Rorug02G0321200 Rorug06G0274600 Rorug06G0274700 Rorug06G0274800 Rorug06G0274800 Rorug07G0274900 Rorug07G0275000 Rorug07G0340400
rosa_samantha	Rh2AG372600 Rh2AG373100 Rh2BG044500 Rh2BG378300 Rh2BG378700 Rh2CG315500 Rh2CG356800 Rh2CG357600 Rh2DG395100 Rh2DG395500 Rh2DG586300 Rh3BG359900 Rh4BG117400 Rh4BG117500 Rh4DG152400 Rh4DG152500 Rh6AG165100 Rh6AG385200 Rh6BG170300 Rh6BG170400 Rh6BG170500 Rh6BG173200 Rh6BG173300 Rh6BG208000 Rh6BG208100 Rh6BG393300 Rh6CG163800 Rh6CG163900 Rh6CG164000 Rh6CG167300 Rh6CG241900 Rh6CG399100 Rh6DG159100 Rh6DG159200 Rh6DG233500 Rh6DG385700 Rh7AG495200 Rh7AG495300 Rh7BG402900 Rh7BG466600 Rh7BG466700 Rh7DG479900
rosa_wichuraiana	Rw0G005930 Rw1G039690 Rw2G030340 Rw2G030400 Rw4G013030 Rw4G013040 Rw5G023130 Rw6G014200 Rw6G014280 Rw6G033560 Rw7G041860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	7 cut(s)	28, 84, 132, 146, 179, 229, 563
AclWI	GGATC	1 cut(s)	79
AcsI	RAATTY	2 cut(s)	430, 539
AflIII	ACRYGT	1 cut(s)	334
AgsI	TTSAA	5 cut(s)	185, 259, 468, 544, 557
AluBI	AGCT	3 cut(s)	92, 203, 527
AluI	AGCT	3 cut(s)	92, 203, 527
Alw21I	GWGCWC	1 cut(s)	486
Alw44I	GTGCAC	1 cut(s)	482
AlwI	GGATC	1 cut(s)	79
ApaLI	GTGCAC	1 cut(s)	482
ApeKI	GCWGC	2 cut(s)	4, 203
ApoI	RAATTY	2 cut(s)	430, 539
AsuC2I	CCSGG	1 cut(s)	81
AsuHPI	GGTGA	1 cut(s)	284
BaeGI	GKGCMC	1 cut(s)	486
Bbv12I	GWGCWC	1 cut(s)	486
BbvI	GCAGC	2 cut(s)	16, 190
BccI	CCATC	1 cut(s)	305
BceAI	ACGGC	2 cut(s)	61, 153
BcnI	CCSGG	1 cut(s)	81
BfaI	CTAG	4 cut(s)	207, 393, 528, 631
BglII	AGATCT	1 cut(s)	598
BisI	GCNGC	5 cut(s)	5, 133, 147, 179, 204
BlsI	GCNGC	5 cut(s)	6, 134, 148, 180, 205
Bme1390I	CCNGG	1 cut(s)	81
BmiI	GGNNCC	1 cut(s)	150
BmrFI	CCNGG	1 cut(s)	81
BmsI	GCATC	1 cut(s)	394
BplI	GAGNNNNNCTC	2 cut(s)	374, 406
BpuMI	CCSGG	1 cut(s)	81
BsaBI	GATNNNNATC	1 cut(s)	288
BsaJI	CCNNGG	1 cut(s)	321
Bse8I	GATNNNNATC	1 cut(s)	288
BseDI	CCNNGG	1 cut(s)	321
BseGI	GGATG	1 cut(s)	61
BseJI	GATNNNNATC	1 cut(s)	288
BseRI	GAGGAG	2 cut(s)	141, 144
BseSI	GKGCMC	1 cut(s)	486
BseXI	GCAGC	2 cut(s)	16, 190
BsgI	GTGCAG	1 cut(s)	483
BsiHKAI	GWGCWC	1 cut(s)	486
BsiSI	CCGG	1 cut(s)	81
BslFI	GGGAC	1 cut(s)	224
BsmFI	GGGAC	1 cut(s)	224
Bsp1286I	GDGCHC	1 cut(s)	486
Bsp143I	GATC	3 cut(s)	71, 289, 598
BspACI	CCGC	7 cut(s)	28, 84, 132, 146, 179, 229, 563
BspLI	GGNNCC	1 cut(s)	150
BspPI	GGATC	1 cut(s)	79
BssECI	CCNNGG	1 cut(s)	321
BssMI	GATC	3 cut(s)	71, 289, 598
BssT1I	CCWWGG	1 cut(s)	321
Bst4CI	ACNGT	2 cut(s)	59, 123
BstDEI	CTNAG	2 cut(s)	236, 515
BstF5I	GGATG	1 cut(s)	61
BstKTI	GATC	3 cut(s)	74, 292, 601
BstMBI	GATC	3 cut(s)	71, 289, 598
BstMWI	GCNNNNNNNGC	1 cut(s)	146
BstNSI	RCATGY	2 cut(s)	338, 482
BstSCI	CCNGG	1 cut(s)	79
BstSLI	GKGCMC	1 cut(s)	486
BstV1I	GCAGC	2 cut(s)	16, 190
BstX2I	RGATCY	1 cut(s)	598
BstYI	RGATCY	1 cut(s)	598
BtsCI	GGATG	1 cut(s)	61
BtsI	GCAGTG	1 cut(s)	415
BtsIMutI	CAGTG	2 cut(s)	119, 415
CviAII	CATG	3 cut(s)	335, 479, 620
CviJI	RGCY	8 cut(s)	48, 92, 116, 140, 149, 203, 358, 527
CviKI_1	RGCY	8 cut(s)	48, 92, 116, 140, 149, 203, 358, 527
DdeI	CTNAG	2 cut(s)	236, 515
DpnI	GATC	3 cut(s)	73, 291, 600
DpnII	GATC	3 cut(s)	71, 289, 598
EciI	GGCGGA	1 cut(s)	99
Eco130I	CCWWGG	1 cut(s)	321
EcoT14I	CCWWGG	1 cut(s)	321
ErhI	CCWWGG	1 cut(s)	321
FaeI	CATG	3 cut(s)	338, 482, 623
FaiI	YATR	8 cut(s)	69, 130, 336, 371, 455, 480, 492, 621
FaqI	GGGAC	1 cut(s)	224
FatI	CATG	3 cut(s)	334, 478, 619
FauI	CCCGC	1 cut(s)	222
Fnu4HI	GCNGC	5 cut(s)	5, 133, 147, 179, 204
FokI	GGATG	1 cut(s)	48
Fsp4HI	GCNGC	5 cut(s)	5, 133, 147, 179, 204
FspBI	CTAG	4 cut(s)	207, 393, 528, 631
GluI	GCNGC	5 cut(s)	5, 133, 147, 179, 204
HapII	CCGG	1 cut(s)	81
Hin1II	CATG	3 cut(s)	338, 482, 623
HinfI	GANTC	2 cut(s)	303, 611
HpaII	CCGG	1 cut(s)	81
HphI	GGTGA	1 cut(s)	284
Hpy166II	GTNNAC	1 cut(s)	484
Hpy188I	TCNGA	2 cut(s)	294, 302
Hpy188III	TCNNGA	1 cut(s)	307
Hpy8I	GTNNAC	1 cut(s)	484
HpyAV	CCTTC	1 cut(s)	432
HpyCH4III	ACNGT	2 cut(s)	59, 123
HpyCH4V	TGCA	5 cut(s)	4, 331, 484, 500, 578
HpyF10VI	GCNNNNNNNGC	1 cut(s)	146
HpyF3I	CTNAG	2 cut(s)	236, 515
Hsp92II	CATG	3 cut(s)	338, 482, 623
Kzo9I	GATC	3 cut(s)	71, 289, 598
LmnI	GCTCC	2 cut(s)	154, 382
LpnPI	CCDG	5 cut(s)	94, 210, 292, 387, 426
Lsp1109I	GCAGC	2 cut(s)	16, 190
LweI	GCATC	1 cut(s)	394
MaeI	CTAG	4 cut(s)	207, 393, 528, 631
MaeIII	GTNAC	1 cut(s)	272
MalI	GATC	3 cut(s)	73, 291, 600
MboI	GATC	3 cut(s)	71, 289, 598
MboII	GAAGA	2 cut(s)	102, 545
MflI	RGATCY	1 cut(s)	598
MhlI	GDGCHC	1 cut(s)	486
MluCI	AATT	8 cut(s)	94, 185, 260, 430, 462, 487, 539, 591
MnlI	CCTC	4 cut(s)	160, 162, 165, 238
MseI	TTAA	4 cut(s)	50, 195, 353, 446
MslI	CAYNNNNRTG	2 cut(s)	66, 489
MspI	CCGG	1 cut(s)	81
MspR9I	CCNGG	1 cut(s)	81
MwoI	GCNNNNNNNGC	1 cut(s)	146
NciI	CCSGG	1 cut(s)	81
NdeII	GATC	3 cut(s)	71, 289, 598
NlaIII	CATG	3 cut(s)	338, 482, 623
NlaIV	GGNNCC	1 cut(s)	150
NmuCI	GTSAC	1 cut(s)	272
NspI	RCATGY	2 cut(s)	338, 482
PciI	ACATGT	1 cut(s)	334
PfeI	GAWTC	2 cut(s)	303, 611
PkrI	GCNGC	5 cut(s)	6, 134, 148, 180, 205
PscI	ACATGT	1 cut(s)	334
PspN4I	GGNNCC	1 cut(s)	150
PsuI	RGATCY	1 cut(s)	598
RseI	CAYNNNNRTG	2 cut(s)	66, 489
SaqAI	TTAA	4 cut(s)	50, 195, 353, 446
SatI	GCNGC	5 cut(s)	5, 133, 147, 179, 204
Sau3AI	GATC	3 cut(s)	71, 289, 598
ScrFI	CCNGG	1 cut(s)	81
SduI	GDGCHC	1 cut(s)	486
SetI	ASST	5 cut(s)	94, 205, 323, 454, 529
SfaNI	GCATC	1 cut(s)	394
SmiMI	CAYNNNNRTG	2 cut(s)	66, 489
Sse9I	AATT	8 cut(s)	94, 185, 260, 430, 462, 487, 539, 591
SsiI	CCGC	7 cut(s)	28, 84, 132, 146, 179, 229, 563
SspMI	CTAG	4 cut(s)	207, 393, 528, 631
StyD4I	CCNGG	1 cut(s)	79
StyI	CCWWGG	1 cut(s)	321
TaaI	ACNGT	2 cut(s)	59, 123
TasI	AATT	8 cut(s)	94, 185, 260, 430, 462, 487, 539, 591
TauI	GCSGC	3 cut(s)	135, 149, 181
TfiI	GAWTC	2 cut(s)	303, 611
Tru1I	TTAA	4 cut(s)	50, 195, 353, 446
Tru9I	TTAA	4 cut(s)	50, 195, 353, 446
TscAI	CASTG	2 cut(s)	126, 422
TseFI	GTSAC	1 cut(s)	272
TseI	GCWGC	2 cut(s)	4, 203
Tsp45I	GTSAC	1 cut(s)	272
TspDTI	ATGAA	2 cut(s)	507, 603
TspGWI	ACGGA	1 cut(s)	179
TspRI	CASTG	2 cut(s)	126, 422
VneI	GTGCAC	1 cut(s)	482
XapI	RAATTY	2 cut(s)	430, 539
XceI	RCATGY	2 cut(s)	338, 482
XspI	CTAG	4 cut(s)	207, 393, 528, 631

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.