Prupe.1G268400_v2.0.a1

FAR1 DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000252
Physical Location & Seq
Forward (+)
27577223 .. 27577633
411 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G268400.1

Sequence Viewer

Length: 411 bp
ATGTATTGTGAGGTAGTTGATACCAAGGAAGATGGTGCGTTTTTAAAGTATCAGATATCTGAAGATATGATAATTGCGGGGAAAAAAAAGAGTGCAAACTTTACAGTTATATTCCATGAATTTGACAGCGAAGTTAAGTGCAATTGTTCCAAGTTTGAGTTTAGGGGAATACTGTGCAGACATGCCATTTATGTCTTGATTAAGCATAAGATGGATTTAATTCCAGATAAATACATCTTGCGAAGATGGAGGAAAGATGTGACAAGACGTCACACAAAGATTAAAATTAGCTATAATGAGTCAAATGCCACACTTGAAGCACATCAGTGTGATAAGATGCAGAAGACCTTTGATGAGATTAAGGAGTTGGCAGCTGATTCTGAAGAAAAGTGTGTGATTGTGATGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

137

Amino Acids

16.0

Weight (kDa)

8.17

Isoelectric Point (pI)

41.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000252)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80010
fragaria_vesca FvH4_2g24400 FvH4_2g24401 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_3g17011 FvH4_4g07801 FvH4_6g23211 FvH4_6g29411 FvH4_6g29411 FvH4_6g29411 FvH4_6g29432 FvH4_6g29432 FvH4_7g19111
malus_domestica MD05G1027500.v1.1 MD08G1156300.v1.1 MD15G1127000.v1.1 MD17G1214400.v1.1 MD17G1214600.v1.1
prunus_persica Prupe.1G268400_v2.0.a1 Prupe.1G482700_v2.0.a1 Prupe.2G013600_v2.0.a1 Prupe.2G072300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090500_v2.0.a1 Prupe.4G256500_v2.0.a1 Prupe.6G116200_v2.0.a1 Prupe.7G015200_v2.0.a1 Prupe.8G014900_v2.0.a1
pyrus_communis pycom05g24990 pycom12g03510 pycom16g12560 pycom17g21900 pycom17g21920
rosa_chinensis RchiOBHm_Chr2g0134881 RchiOBHm_Chr2g0134921 RchiOBHm_Chr6g0297621
rosa_laevigata RLG00000011576 RLG00000012728 RLG00000013853 RLG00000014630 RLG00000019427 RLG00000019430 RLG00000020625
rosa_multiflora Rmu_sc0001385.1_g000003 Rmu_sc0001541.1_g000005 Rmu_sc0001719.1_g000010 Rmu_sc0001719.1_g000011 Rmu_sc0002283.1_g000033 Rmu_sc0004350.1_g000004 Rmu_sc0004350.1_g000005 Rmu_sc0004406.1_g000014 Rmu_sc0004564.1_g000003 Rmu_sc0005198.1_g000003 Rmu_sc0005198.1_g000004 Rmu_sc0005198.1_g000005 Rmu_sc0023742.1_g000001 Rmu_sc0023743.1_g000001 Rmu_ssc0000291.1_g000011 Rmu_ssc0000291.1_g000012
rosa_roxburghii Rroxscaffold_2G00109640 Rroxscaffold_2G00109680 Rroxscaffold_2G00114370 Rroxscaffold_2G00135950 Rroxscaffold_3G00225840 Rroxscaffold_3G00227000 Rroxscaffold_7G00170310 Rroxscaffold_7G00172860 Rroxscaffold_7G00179400 Rroxscaffold_7G00198760
rosa_rugosa Rorug02G0321200 Rorug06G0274600 Rorug06G0274700 Rorug06G0274800 Rorug06G0274800 Rorug07G0274900 Rorug07G0275000 Rorug07G0340400
rosa_samantha Rh2AG372600 Rh2AG373100 Rh2BG044500 Rh2BG378300 Rh2BG378700 Rh2CG315500 Rh2CG356800 Rh2CG357600 Rh2DG395100 Rh2DG395500 Rh2DG586300 Rh3BG359900 Rh4BG117400 Rh4BG117500 Rh4DG152400 Rh4DG152500 Rh6AG165100 Rh6AG385200 Rh6BG170300 Rh6BG170400 Rh6BG170500 Rh6BG173200 Rh6BG173300 Rh6BG208000 Rh6BG208100 Rh6BG393300 Rh6CG163800 Rh6CG163900 Rh6CG164000 Rh6CG167300 Rh6CG241900 Rh6CG399100 Rh6DG159100 Rh6DG159200 Rh6DG233500 Rh6DG385700 Rh7AG495200 Rh7AG495300 Rh7BG402900 Rh7BG466600 Rh7BG466700 Rh7DG479900
rosa_wichuraiana Rw0G005930 Rw1G039690 Rw2G030340 Rw2G030400 Rw4G013030 Rw4G013040 Rw5G023130 Rw6G014200 Rw6G014280 Rw6G033560 Rw7G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 271
AciI CCGC 1 cut(s) 77
AcsI RAATTY 1 cut(s) 119
AcuI CTGAAG 2 cut(s) 81, 402
AcyI GRCGYC 1 cut(s) 268
AgsI TTSAA 1 cut(s) 317
AhdI GACNNNNNGTC 1 cut(s) 267
AleI CACNNNNGTG 1 cut(s) 325
AluBI AGCT 2 cut(s) 291, 374
AluI AGCT 2 cut(s) 291, 374
ApeKI GCWGC 1 cut(s) 371
ApoI RAATTY 1 cut(s) 119
BbsI GAAGAC 1 cut(s) 350
BbvI GCAGC 1 cut(s) 383
BccI CCATC 4 cut(s) 26, 205, 240, 397
BisI GCNGC 1 cut(s) 372
BlsI GCNGC 1 cut(s) 373
BmeRI GACNNNNNGTC 1 cut(s) 267
BmsI GCATC 1 cut(s) 327
BpiI GAAGAC 1 cut(s) 350
BsaHI GRCGYC 1 cut(s) 268
BsaJI CCNNGG 1 cut(s) 24
BseDI CCNNGG 1 cut(s) 24
BseXI GCAGC 1 cut(s) 383
BsgI GTGCAG 1 cut(s) 196
BspACI CCGC 1 cut(s) 77
BssECI CCNNGG 1 cut(s) 24
BssNI GRCGYC 1 cut(s) 268
BssT1I CCWWGG 1 cut(s) 24
Bst4CI ACNGT 2 cut(s) 106, 174
BstACI GRCGYC 1 cut(s) 268
BstDEI CTNAG 1 cut(s) 408
BstNSI RCATGY 1 cut(s) 185
BstV1I GCAGC 1 cut(s) 383
BstV2I GAAGAC 1 cut(s) 350
BtsIMutI CAGTG 1 cut(s) 332
CviAII CATG 2 cut(s) 116, 182
CviJI RGCY 3 cut(s) 291, 374, 407
CviKI_1 RGCY 3 cut(s) 291, 374, 407
DdeI CTNAG 1 cut(s) 408
DraI TTTAAA 1 cut(s) 45
DriI GACNNNNNGTC 1 cut(s) 267
Eam1105I GACNNNNNGTC 1 cut(s) 267
Eco130I CCWWGG 1 cut(s) 24
Eco32I GATATC 1 cut(s) 57
Eco57I CTGAAG 2 cut(s) 81, 402
EcoRV GATATC 1 cut(s) 57
EcoT14I CCWWGG 1 cut(s) 24
ErhI CCWWGG 1 cut(s) 24
FaeI CATG 2 cut(s) 119, 185
FaiI YATR 7 cut(s) 68, 110, 117, 183, 192, 207, 294
FatI CATG 2 cut(s) 115, 181
FauI CCCGC 1 cut(s) 70
Fnu4HI GCNGC 1 cut(s) 372
Fsp4HI GCNGC 1 cut(s) 372
GluI GCNGC 1 cut(s) 372
Hin1I GRCGYC 1 cut(s) 268
Hin1II CATG 2 cut(s) 119, 185
HinfI GANTC 2 cut(s) 299, 377
Hpy188I TCNGA 3 cut(s) 54, 61, 382
Hpy188III TCNNGA 2 cut(s) 196, 224
HpyCH4III ACNGT 2 cut(s) 106, 174
HpyCH4IV ACGT 1 cut(s) 268
HpyCH4V TGCA 4 cut(s) 95, 141, 177, 340
HpyF3I CTNAG 1 cut(s) 408
HpySE526I ACGT 1 cut(s) 268
Hsp92I GRCGYC 1 cut(s) 268
Hsp92II CATG 2 cut(s) 119, 185
LpnPI CCDG 1 cut(s) 237
Lsp1109I GCAGC 1 cut(s) 383
LweI GCATC 1 cut(s) 327
MaeII ACGT 1 cut(s) 268
MaeIII GTNAC 2 cut(s) 259, 269
MboII GAAGA 5 cut(s) 41, 74, 255, 355, 395
MfeI CAATTG 1 cut(s) 142
MluCI AATT 5 cut(s) 72, 119, 142, 219, 285
MlyI GAGTC 1 cut(s) 308
MnlI CCTC 2 cut(s) 4, 243
MseI TTAA 6 cut(s) 44, 135, 201, 218, 282, 360
MslI CAYNNNNRTG 2 cut(s) 325, 327
MspA1I CMGCKG 1 cut(s) 374
MunI CAATTG 1 cut(s) 142
NlaIII CATG 2 cut(s) 119, 185
NmuCI GTSAC 2 cut(s) 259, 269
NspI RCATGY 1 cut(s) 185
OliI CACNNNNGTG 1 cut(s) 325
PfeI GAWTC 1 cut(s) 377
PkrI GCNGC 1 cut(s) 373
PleI GAGTC 1 cut(s) 307
PpsI GAGTC 1 cut(s) 307
PvuII CAGCTG 1 cut(s) 374
RseI CAYNNNNRTG 2 cut(s) 325, 327
SaqAI TTAA 6 cut(s) 44, 135, 201, 218, 282, 360
SatI GCNGC 1 cut(s) 372
SchI GAGTC 1 cut(s) 308
SetI ASST 5 cut(s) 15, 271, 293, 350, 376
SfaNI GCATC 1 cut(s) 327
SmiMI CAYNNNNRTG 2 cut(s) 325, 327
Sse9I AATT 5 cut(s) 72, 119, 142, 219, 285
SsiI CCGC 1 cut(s) 77
StyI CCWWGG 1 cut(s) 24
TaaI ACNGT 2 cut(s) 106, 174
TaiI ACGT 1 cut(s) 271
TasI AATT 5 cut(s) 72, 119, 142, 219, 285
TfiI GAWTC 1 cut(s) 377
Tru1I TTAA 6 cut(s) 44, 135, 201, 218, 282, 360
Tru9I TTAA 6 cut(s) 44, 135, 201, 218, 282, 360
TscAI CASTG 1 cut(s) 332
TseFI GTSAC 2 cut(s) 259, 269
TseI GCWGC 1 cut(s) 371
Tsp45I GTSAC 2 cut(s) 259, 269
TspDTI ATGAA 1 cut(s) 132
TspRI CASTG 1 cut(s) 332
XapI RAATTY 1 cut(s) 119
XceI RCATGY 1 cut(s) 185
ZraI GACGTC 1 cut(s) 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.