Prupe.7G015200_v2.0.a1

Protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0000252
Physical Location & Seq
Forward (+)
2223793 .. 2224161
369 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G015200.1

Sequence Viewer

Length: 369 bp
ATGGAAGATATAACATCTTTAGAAGATAATTCAAGTGAGCCCAACGAAATAGAAGATACAAAAAATTTAGAAGGGAACTCAAATGAACTCAATGAAATGGAAGATGCAGCAAATTTGGAAGAGTATTCAAGTGCAGTGAATGAAATGGAAGATCCAACAAATATGAAAGATAAAGTGAAGGACCCAGAGGTTGGAGCAATATTTGATTCCTTGGAAGAGCTAGCTGAATATTACAAAAATTACGGGAAAGAAAAGGGGTTTGAAGTTAGTAAAAGGACCTCAAGAAAGGGAGATAGTGGGGAACTGAAATATTTGACTTTGGCATGTTCACGTTCCGGAAAGTCGAAGTGTAATTTGCTAAAATATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

123

Amino Acids

13.77

Weight (kDa)

4.43

Isoelectric Point (pI)

42.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000252)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80010
fragaria_vesca FvH4_2g24400 FvH4_2g24401 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_3g17011 FvH4_4g07801 FvH4_6g23211 FvH4_6g29411 FvH4_6g29411 FvH4_6g29411 FvH4_6g29432 FvH4_6g29432 FvH4_7g19111
malus_domestica MD05G1027500.v1.1 MD08G1156300.v1.1 MD15G1127000.v1.1 MD17G1214400.v1.1 MD17G1214600.v1.1
prunus_persica Prupe.1G268400_v2.0.a1 Prupe.1G482700_v2.0.a1 Prupe.2G013600_v2.0.a1 Prupe.2G072300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090500_v2.0.a1 Prupe.4G256500_v2.0.a1 Prupe.6G116200_v2.0.a1 Prupe.7G015200_v2.0.a1 Prupe.8G014900_v2.0.a1
pyrus_communis pycom05g24990 pycom12g03510 pycom16g12560 pycom17g21900 pycom17g21920
rosa_chinensis RchiOBHm_Chr2g0134881 RchiOBHm_Chr2g0134921 RchiOBHm_Chr6g0297621
rosa_laevigata RLG00000011576 RLG00000012728 RLG00000013853 RLG00000014630 RLG00000019427 RLG00000019430 RLG00000020625
rosa_multiflora Rmu_sc0001385.1_g000003 Rmu_sc0001541.1_g000005 Rmu_sc0001719.1_g000010 Rmu_sc0001719.1_g000011 Rmu_sc0002283.1_g000033 Rmu_sc0004350.1_g000004 Rmu_sc0004350.1_g000005 Rmu_sc0004406.1_g000014 Rmu_sc0004564.1_g000003 Rmu_sc0005198.1_g000003 Rmu_sc0005198.1_g000004 Rmu_sc0005198.1_g000005 Rmu_sc0023742.1_g000001 Rmu_sc0023743.1_g000001 Rmu_ssc0000291.1_g000011 Rmu_ssc0000291.1_g000012
rosa_roxburghii Rroxscaffold_2G00109640 Rroxscaffold_2G00109680 Rroxscaffold_2G00114370 Rroxscaffold_2G00135950 Rroxscaffold_3G00225840 Rroxscaffold_3G00227000 Rroxscaffold_7G00170310 Rroxscaffold_7G00172860 Rroxscaffold_7G00179400 Rroxscaffold_7G00198760
rosa_rugosa Rorug02G0321200 Rorug06G0274600 Rorug06G0274700 Rorug06G0274800 Rorug06G0274800 Rorug07G0274900 Rorug07G0275000 Rorug07G0340400
rosa_samantha Rh2AG372600 Rh2AG373100 Rh2BG044500 Rh2BG378300 Rh2BG378700 Rh2CG315500 Rh2CG356800 Rh2CG357600 Rh2DG395100 Rh2DG395500 Rh2DG586300 Rh3BG359900 Rh4BG117400 Rh4BG117500 Rh4DG152400 Rh4DG152500 Rh6AG165100 Rh6AG385200 Rh6BG170300 Rh6BG170400 Rh6BG170500 Rh6BG173200 Rh6BG173300 Rh6BG208000 Rh6BG208100 Rh6BG393300 Rh6CG163800 Rh6CG163900 Rh6CG164000 Rh6CG167300 Rh6CG241900 Rh6CG399100 Rh6DG159100 Rh6DG159200 Rh6DG233500 Rh6DG385700 Rh7AG495200 Rh7AG495300 Rh7BG402900 Rh7BG466600 Rh7BG466700 Rh7DG479900
rosa_wichuraiana Rw0G005930 Rw1G039690 Rw2G030340 Rw2G030400 Rw4G013030 Rw4G013040 Rw5G023130 Rw6G014200 Rw6G014280 Rw6G033560 Rw7G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 191
AccIII TCCGGA 1 cut(s) 335
AclWI GGATC 1 cut(s) 146
AcsI RAATTY 2 cut(s) 64, 112
AfiI CCNNNNNNNGG 1 cut(s) 191
AgsI TTSAA 3 cut(s) 33, 129, 263
AluBI AGCT 2 cut(s) 220, 224
AluI AGCT 2 cut(s) 220, 224
AlwI GGATC 1 cut(s) 146
Aor13HI TCCGGA 1 cut(s) 335
ApeKI GCWGC 1 cut(s) 107
ApoI RAATTY 2 cut(s) 64, 112
AspS9I GGNCC 2 cut(s) 181, 276
AsuNHI GCTAGC 1 cut(s) 220
AvaII GGWCC 2 cut(s) 181, 276
BanII GRGCYC 1 cut(s) 42
BbvI GCAGC 1 cut(s) 119
BfaI CTAG 1 cut(s) 221
BisI GCNGC 1 cut(s) 108
BlsI GCNGC 1 cut(s) 109
Bme18I GGWCC 2 cut(s) 181, 276
BmgT120I GGNCC 2 cut(s) 181, 276
BmiI GGNNCC 1 cut(s) 183
BmsI GCATC 1 cut(s) 94
BmtI GCTAGC 1 cut(s) 224
BpuEI CTTGAG 1 cut(s) 265
BsaJI CCNNGG 1 cut(s) 210
BsaWI WCCGGW 1 cut(s) 335
Bsc4I CCNNNNNNNGG 1 cut(s) 191
BseAI TCCGGA 1 cut(s) 335
BseDI CCNNGG 1 cut(s) 210
BseLI CCNNNNNNNGG 1 cut(s) 191
BseXI GCAGC 1 cut(s) 119
BsgI GTGCAG 1 cut(s) 153
BsiSI CCGG 1 cut(s) 336
BslI CCNNNNNNNGG 1 cut(s) 191
Bsp1286I GDGCHC 1 cut(s) 42
Bsp13I TCCGGA 1 cut(s) 335
Bsp143I GATC 1 cut(s) 151
BspEI TCCGGA 1 cut(s) 335
BspLI GGNNCC 1 cut(s) 183
BspOI GCTAGC 1 cut(s) 224
BspPI GGATC 1 cut(s) 146
BspQI GCTCTTC 1 cut(s) 210
BssECI CCNNGG 1 cut(s) 210
BssMI GATC 1 cut(s) 151
BssT1I CCWWGG 1 cut(s) 210
Bst6I CTCTTC 2 cut(s) 114, 210
BstC8I GCNNGC 1 cut(s) 222
BstKTI GATC 1 cut(s) 154
BstMBI GATC 1 cut(s) 151
BstNSI RCATGY 1 cut(s) 327
BstV1I GCAGC 1 cut(s) 119
BstX2I RGATCY 1 cut(s) 151
BstYI RGATCY 1 cut(s) 151
BtsI GCAGTG 1 cut(s) 141
BtsIMutI CAGTG 1 cut(s) 141
Cac8I GCNNGC 1 cut(s) 222
Cfr13I GGNCC 2 cut(s) 181, 276
CviAII CATG 1 cut(s) 324
CviJI RGCY 3 cut(s) 40, 220, 224
CviKI_1 RGCY 3 cut(s) 40, 220, 224
DpnI GATC 1 cut(s) 153
DpnII GATC 1 cut(s) 151
Eam1104I CTCTTC 2 cut(s) 114, 210
EarI CTCTTC 2 cut(s) 114, 210
Eco130I CCWWGG 1 cut(s) 210
Eco24I GRGCYC 1 cut(s) 42
Eco47I GGWCC 2 cut(s) 181, 276
EcoO109I RGGNCCY 2 cut(s) 181, 276
EcoT14I CCWWGG 1 cut(s) 210
EcoT38I GRGCYC 1 cut(s) 42
ErhI CCWWGG 1 cut(s) 210
FaeI CATG 1 cut(s) 327
FaiI YATR 3 cut(s) 11, 164, 325
FatI CATG 1 cut(s) 323
Fnu4HI GCNGC 1 cut(s) 108
FriOI GRGCYC 1 cut(s) 42
Fsp4HI GCNGC 1 cut(s) 108
FspBI CTAG 1 cut(s) 221
GluI GCNGC 1 cut(s) 108
HapII CCGG 1 cut(s) 336
Hin1II CATG 1 cut(s) 327
HinfI GANTC 1 cut(s) 206
HpaII CCGG 1 cut(s) 336
Hpy166II GTNNAC 1 cut(s) 329
Hpy188III TCNNGA 2 cut(s) 282, 336
Hpy8I GTNNAC 1 cut(s) 329
HpyAV CCTTC 2 cut(s) 65, 172
HpyCH4IV ACGT 1 cut(s) 331
HpyCH4V TGCA 2 cut(s) 107, 134
HpySE526I ACGT 1 cut(s) 331
Hsp92II CATG 1 cut(s) 327
Kpn2I TCCGGA 1 cut(s) 335
Kzo9I GATC 1 cut(s) 151
LguI GCTCTTC 1 cut(s) 210
LmnI GCTCC 1 cut(s) 194
LpnPI CCDG 2 cut(s) 198, 349
Lsp1109I GCAGC 1 cut(s) 119
LweI GCATC 1 cut(s) 94
MaeI CTAG 1 cut(s) 221
MaeII ACGT 1 cut(s) 331
MalI GATC 1 cut(s) 153
MboI GATC 1 cut(s) 151
MboII GAAGA 7 cut(s) 17, 35, 65, 113, 131, 161, 227
MflI RGATCY 1 cut(s) 151
MhlI GDGCHC 1 cut(s) 42
MluCI AATT 5 cut(s) 28, 64, 112, 238, 352
MmeI TCCRAC 2 cut(s) 172, 179
MnlI CCTC 2 cut(s) 181, 289
MroI TCCGGA 1 cut(s) 335
MseI TTAA 1 cut(s) 367
MspI CCGG 1 cut(s) 336
NdeII GATC 1 cut(s) 151
NheI GCTAGC 1 cut(s) 220
NlaIII CATG 1 cut(s) 327
NlaIV GGNNCC 1 cut(s) 183
NspI RCATGY 1 cut(s) 327
PciSI GCTCTTC 1 cut(s) 210
PfeI GAWTC 1 cut(s) 206
PflMI CCANNNNNTGG 1 cut(s) 191
PkrI GCNGC 1 cut(s) 109
PpuMI RGGWCCY 2 cut(s) 181, 276
Psp5II RGGWCCY 2 cut(s) 181, 276
PspN4I GGNNCC 1 cut(s) 183
PspPI GGNCC 2 cut(s) 181, 276
PspPPI RGGWCCY 2 cut(s) 181, 276
PsuI RGATCY 1 cut(s) 151
SapI GCTCTTC 1 cut(s) 210
SaqAI TTAA 1 cut(s) 367
SatI GCNGC 1 cut(s) 108
Sau3AI GATC 1 cut(s) 151
Sau96I GGNCC 2 cut(s) 181, 276
SduI GDGCHC 1 cut(s) 42
SetI ASST 5 cut(s) 192, 222, 226, 281, 334
SfaNI GCATC 1 cut(s) 94
SinI GGWCC 2 cut(s) 181, 276
SmlI CTYRAG 1 cut(s) 280
SmoI CTYRAG 1 cut(s) 280
Sse9I AATT 5 cut(s) 28, 64, 112, 238, 352
SspI AATATT 4 cut(s) 201, 230, 311, 365
SspMI CTAG 1 cut(s) 221
StyI CCWWGG 1 cut(s) 210
TaiI ACGT 1 cut(s) 334
TaqI TCGA 1 cut(s) 344
TasI AATT 5 cut(s) 28, 64, 112, 238, 352
TfiI GAWTC 1 cut(s) 206
Tru1I TTAA 1 cut(s) 367
Tru9I TTAA 1 cut(s) 367
TscAI CASTG 1 cut(s) 141
TseI GCWGC 1 cut(s) 107
TspDTI ATGAA 4 cut(s) 99, 108, 156, 179
TspRI CASTG 1 cut(s) 141
Van91I CCANNNNNTGG 1 cut(s) 191
VpaK11BI GGWCC 2 cut(s) 181, 276
XapI RAATTY 2 cut(s) 64, 112
XceI RCATGY 1 cut(s) 327
XspI CTAG 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.