Rh6BG208000

Protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000252
Physical Location & Seq
Forward (+)
39175327 .. 39178361
3035 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG208000.1

Sequence Viewer

Length: 672 bp
ATGGAAAGTGTTGAGAATGAAATGGATACTGCATATGTGGAAGAAAATATGGAATGTGGGGATGAAGTGGAAACTGAGAGAAGTAATGTAGAAATTGATATCGAAAATACTGGGAATGAAACAGTGACAGAAAGGGTAAAAGAGCCAGAGATTGGACTAGTGTTTGACTCAATTGATGAGCTAGAGAAGTATTATAAATCCTATGGAAAAGAAATAGGGTTTGAAGTTTGTAAAAGGATATCAAGCAAAGGAGATGATGGGGAATTGAAGTACATAACATTCACATGTTCATGTTTTGGCAAGCCTAGTAGCAAGTCAAGACATGCATTTAAATTGCAACCAGTTGCAAAATCAGATTGCAGGGCTAAACTCAATGCAAATTTACTCCCTGATAGAAAATGGTTAGTATCCTCTATTGTGCTTGAACATAATCATGATCTTAGTACTCCAAGCAAAAGACGGTTTTATAAAAGCTCAAGAGAATTACCGCCACACGTTAAAAAGAGGTTAGCAACAAATGATATAGCTGGAATAAGACCAAAAAAGAATTTCAATTCCTTTGTGGTTGAAGCCGGTGGACATGAGAATTTAACATTCCTGGAGAAAGATGTGAGAAATTTTCTTGATAAGATATCACTGTGGATGAAGATGTTAAGATCGGTACAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

223

Amino Acids

25.62

Weight (kDa)

6.26

Isoelectric Point (pI)

49.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 63 - 148 2.4e-15 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000252)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80010
fragaria_vesca FvH4_2g24400 FvH4_2g24401 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_2g28851 FvH4_3g17011 FvH4_4g07801 FvH4_6g23211 FvH4_6g29411 FvH4_6g29411 FvH4_6g29411 FvH4_6g29432 FvH4_6g29432 FvH4_7g19111
malus_domestica MD05G1027500.v1.1 MD08G1156300.v1.1 MD15G1127000.v1.1 MD17G1214400.v1.1 MD17G1214600.v1.1
prunus_persica Prupe.1G268400_v2.0.a1 Prupe.1G482700_v2.0.a1 Prupe.2G013600_v2.0.a1 Prupe.2G072300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090300_v2.0.a1 Prupe.3G090500_v2.0.a1 Prupe.4G256500_v2.0.a1 Prupe.6G116200_v2.0.a1 Prupe.7G015200_v2.0.a1 Prupe.8G014900_v2.0.a1
pyrus_communis pycom05g24990 pycom12g03510 pycom16g12560 pycom17g21900 pycom17g21920
rosa_chinensis RchiOBHm_Chr2g0134881 RchiOBHm_Chr2g0134921 RchiOBHm_Chr6g0297621
rosa_laevigata RLG00000011576 RLG00000012728 RLG00000013853 RLG00000014630 RLG00000019427 RLG00000019430 RLG00000020625
rosa_multiflora Rmu_sc0001385.1_g000003 Rmu_sc0001541.1_g000005 Rmu_sc0001719.1_g000010 Rmu_sc0001719.1_g000011 Rmu_sc0002283.1_g000033 Rmu_sc0004350.1_g000004 Rmu_sc0004350.1_g000005 Rmu_sc0004406.1_g000014 Rmu_sc0004564.1_g000003 Rmu_sc0005198.1_g000003 Rmu_sc0005198.1_g000004 Rmu_sc0005198.1_g000005 Rmu_sc0023742.1_g000001 Rmu_sc0023743.1_g000001 Rmu_ssc0000291.1_g000011 Rmu_ssc0000291.1_g000012
rosa_roxburghii Rroxscaffold_2G00109640 Rroxscaffold_2G00109680 Rroxscaffold_2G00114370 Rroxscaffold_2G00135950 Rroxscaffold_3G00225840 Rroxscaffold_3G00227000 Rroxscaffold_7G00170310 Rroxscaffold_7G00172860 Rroxscaffold_7G00179400 Rroxscaffold_7G00198760
rosa_rugosa Rorug02G0321200 Rorug06G0274600 Rorug06G0274700 Rorug06G0274800 Rorug06G0274800 Rorug07G0274900 Rorug07G0275000 Rorug07G0340400
rosa_samantha Rh2AG372600 Rh2AG373100 Rh2BG044500 Rh2BG378300 Rh2BG378700 Rh2CG315500 Rh2CG356800 Rh2CG357600 Rh2DG395100 Rh2DG395500 Rh2DG586300 Rh3BG359900 Rh4BG117400 Rh4BG117500 Rh4DG152400 Rh4DG152500 Rh6AG165100 Rh6AG385200 Rh6BG170300 Rh6BG170400 Rh6BG170500 Rh6BG173200 Rh6BG173300 Rh6BG208000 Rh6BG208100 Rh6BG393300 Rh6CG163800 Rh6CG163900 Rh6CG164000 Rh6CG167300 Rh6CG241900 Rh6CG399100 Rh6DG159100 Rh6DG159200 Rh6DG233500 Rh6DG385700 Rh7AG495200 Rh7AG495300 Rh7BG402900 Rh7BG466600 Rh7BG466700 Rh7DG479900
rosa_wichuraiana Rw0G005930 Rw1G039690 Rw2G030340 Rw2G030400 Rw4G013030 Rw4G013040 Rw5G023130 Rw6G014200 Rw6G014280 Rw6G033560 Rw7G041860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 195, 468
AccB7I CCANNNNNTGG 1 cut(s) 152
AciI CCGC 1 cut(s) 488
AcsI RAATTY 4 cut(s) 379, 547, 586, 616
AfaI GTAC 3 cut(s) 272, 445, 663
AfiI CCNNNNNNNGG 1 cut(s) 152
AflIII ACRYGT 2 cut(s) 284, 493
AgsI TTSAA 5 cut(s) 224, 268, 425, 553, 569
AhlI ACTAGT 1 cut(s) 157
AjnI CCWGG 1 cut(s) 597
AluBI AGCT 3 cut(s) 181, 474, 527
AluI AGCT 3 cut(s) 181, 474, 527
ApoI RAATTY 4 cut(s) 379, 547, 586, 616
BccI CCATC 1 cut(s) 251
BciT130I CCWGG 1 cut(s) 599
BciVI GTATCC 2 cut(s) 19, 418
BcuI ACTAGT 1 cut(s) 157
BfaI CTAG 3 cut(s) 158, 182, 306
BfuI GTATCC 2 cut(s) 19, 418
BmcAI AGTACT 1 cut(s) 445
Bme1390I CCNGG 1 cut(s) 599
BmrFI CCNGG 1 cut(s) 599
BmrI ACTGGG 1 cut(s) 120
BmuI ACTGGG 1 cut(s) 120
BpmI CTGGAG 1 cut(s) 620
BpuEI CTTGAG 1 cut(s) 460
Bsc4I CCNNNNNNNGG 1 cut(s) 152
Bse118I RCCGGY 1 cut(s) 572
Bse1I ACTGG 2 cut(s) 115, 341
BseBI CCWGG 1 cut(s) 599
BseGI GGATG 2 cut(s) 67, 648
BseLI CCNNNNNNNGG 1 cut(s) 152
BseMII CTCAG 1 cut(s) 66
BseNI ACTGG 2 cut(s) 115, 341
BsiSI CCGG 1 cut(s) 573
BslI CCNNNNNNNGG 1 cut(s) 152
Bsp143I GATC 2 cut(s) 436, 656
BspACI CCGC 1 cut(s) 488
BspCNI CTCAG 1 cut(s) 67
BspHI TCATGA 1 cut(s) 433
BsrFI RCCGGY 1 cut(s) 572
BsrI ACTGG 2 cut(s) 115, 341
BssAI RCCGGY 1 cut(s) 572
BssMI GATC 2 cut(s) 436, 656
Bst2UI CCWGG 1 cut(s) 599
Bst4CI ACNGT 3 cut(s) 124, 462, 639
BstC8I GCNNGC 1 cut(s) 302
BstDEI CTNAG 2 cut(s) 75, 440
BstF5I GGATG 2 cut(s) 67, 648
BstKTI GATC 2 cut(s) 439, 659
BstMBI GATC 2 cut(s) 436, 656
BstNI CCWGG 1 cut(s) 599
BstNSI RCATGY 2 cut(s) 288, 326
BstSCI CCNGG 1 cut(s) 597
BsuI GTATCC 2 cut(s) 19, 418
BtsCI GGATG 2 cut(s) 67, 648
BtsIMutI CAGTG 2 cut(s) 129, 635
Cac8I GCNNGC 1 cut(s) 302
CciI TCATGA 1 cut(s) 433
Cfr10I RCCGGY 1 cut(s) 572
Csp6I GTAC 3 cut(s) 271, 444, 662
CviAII CATG 5 cut(s) 285, 291, 323, 434, 581
CviJI RGCY 7 cut(s) 145, 181, 304, 365, 474, 527, 572
CviKI_1 RGCY 7 cut(s) 145, 181, 304, 365, 474, 527, 572
CviQI GTAC 3 cut(s) 271, 444, 662
DdeI CTNAG 2 cut(s) 75, 440
DpnI GATC 2 cut(s) 438, 658
DpnII GATC 2 cut(s) 436, 656
DraI TTTAAA 1 cut(s) 331
Eco32I GATATC 3 cut(s) 100, 240, 633
EcoRII CCWGG 1 cut(s) 597
EcoRV GATATC 3 cut(s) 100, 240, 633
EcoT22I ATGCAT 1 cut(s) 328
FaeI CATG 5 cut(s) 288, 294, 326, 437, 584
FatI CATG 5 cut(s) 284, 290, 322, 433, 580
FauNDI CATATG 1 cut(s) 34
FokI GGATG 2 cut(s) 74, 655
FspBI CTAG 3 cut(s) 158, 182, 306
GsuI CTGGAG 1 cut(s) 620
HapII CCGG 1 cut(s) 573
Hin1II CATG 5 cut(s) 288, 294, 326, 437, 584
HinfI GANTC 1 cut(s) 167
HpaII CCGG 1 cut(s) 573
Hpy166II GTNNAC 1 cut(s) 578
Hpy188I TCNGA 1 cut(s) 355
Hpy188III TCNNGA 4 cut(s) 318, 434, 477, 623
Hpy8I GTNNAC 1 cut(s) 578
HpyCH4III ACNGT 3 cut(s) 124, 462, 639
HpyCH4IV ACGT 1 cut(s) 495
HpyCH4V TGCA 6 cut(s) 32, 326, 337, 347, 360, 377
HpyF3I CTNAG 2 cut(s) 75, 440
HpySE526I ACGT 1 cut(s) 495
Hsp92II CATG 5 cut(s) 288, 294, 326, 437, 584
Kzo9I GATC 2 cut(s) 436, 656
LpnPI CCDG 9 cut(s) 96, 159, 346, 354, 402, 513, 584, 586, 611
MaeI CTAG 3 cut(s) 158, 182, 306
MaeII ACGT 1 cut(s) 495
MaeIII GTNAC 1 cut(s) 124
MalI GATC 2 cut(s) 438, 658
MboI GATC 2 cut(s) 436, 656
MboII GAAGA 2 cut(s) 53, 658
MfeI CAATTG 1 cut(s) 171
MlyI GAGTC 1 cut(s) 161
MnlI CCTC 2 cut(s) 421, 498
Mph1103I ATGCAT 1 cut(s) 328
MseI TTAA 4 cut(s) 330, 498, 590, 653
MslI CAYNNNNRTG 3 cut(s) 283, 289, 432
MspI CCGG 1 cut(s) 573
MspR9I CCNGG 1 cut(s) 599
MunI CAATTG 1 cut(s) 171
MvaI CCWGG 1 cut(s) 599
NdeI CATATG 1 cut(s) 34
NdeII GATC 2 cut(s) 436, 656
NlaIII CATG 5 cut(s) 288, 294, 326, 437, 584
NmuCI GTSAC 1 cut(s) 124
NsiI ATGCAT 1 cut(s) 328
NspI RCATGY 2 cut(s) 288, 326
PagI TCATGA 1 cut(s) 433
PciI ACATGT 1 cut(s) 284
PflMI CCANNNNNTGG 1 cut(s) 152
PfoI TCCNGGA 1 cut(s) 597
PleI GAGTC 1 cut(s) 161
PpsI GAGTC 1 cut(s) 161
PscI ACATGT 1 cut(s) 284
PsiI TTATAA 2 cut(s) 195, 468
Psp6I CCWGG 1 cut(s) 597
PspGI CCWGG 1 cut(s) 597
RsaI GTAC 3 cut(s) 272, 445, 663
RsaNI GTAC 3 cut(s) 271, 444, 662
RseI CAYNNNNRTG 3 cut(s) 283, 289, 432
SaqAI TTAA 4 cut(s) 330, 498, 590, 653
Sau3AI GATC 2 cut(s) 436, 656
ScaI AGTACT 1 cut(s) 445
SchI GAGTC 1 cut(s) 161
ScrFI CCNGG 1 cut(s) 599
SetI ASST 5 cut(s) 183, 476, 498, 509, 529
SmiI ATTTAAAT 1 cut(s) 331
SmiMI CAYNNNNRTG 3 cut(s) 283, 289, 432
SmlI CTYRAG 1 cut(s) 475
SmoI CTYRAG 1 cut(s) 475
SpeI ACTAGT 1 cut(s) 157
SsiI CCGC 1 cut(s) 488
SspMI CTAG 3 cut(s) 158, 182, 306
StyD4I CCNGG 1 cut(s) 597
SwaI ATTTAAAT 1 cut(s) 331
TaaI ACNGT 3 cut(s) 124, 462, 639
TaiI ACGT 1 cut(s) 498
TaqI TCGA 1 cut(s) 102
TatI WGTACW 2 cut(s) 270, 443
Tru1I TTAA 4 cut(s) 330, 498, 590, 653
Tru9I TTAA 4 cut(s) 330, 498, 590, 653
TscAI CASTG 2 cut(s) 129, 642
TseFI GTSAC 1 cut(s) 124
Tsp45I GTSAC 1 cut(s) 124
TspDTI ATGAA 5 cut(s) 33, 78, 132, 279, 659
TspRI CASTG 2 cut(s) 129, 642
Van91I CCANNNNNTGG 1 cut(s) 152
XapI RAATTY 4 cut(s) 379, 547, 586, 616
XceI RCATGY 2 cut(s) 288, 326
XspI CTAG 3 cut(s) 158, 182, 306
ZrmI AGTACT 1 cut(s) 445
Zsp2I ATGCAT 1 cut(s) 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.