Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0011311

Physical Location & Seq

Genomic Coordinates Reverse (-)

58558711 .. 58559736

Gene Structure 1026 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG399200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGCGATACTCTACACTCTCGTGGCGCGGGGATCGGTGGTGCTCGCCGAGTTCAGCGCCACGGCGACCAACGCCTCCGCCATCTCGCGCCAAATTCTCGAGAAGATCACCGGCGACAGCGACTCCCACGTCTCTTACTCCCAAGATCGCTACATCTTCCACGTCAAGCGCACCGATGGCCTCACCGTCCTCTGTATGGCCGACGAGACCGCCGGCAGGAGAATGCCTTTTTCGTTTCTTGAAGACATCCACCAGCGATTCGTGAGGAGCTACGGCCGCGCCGTGCTCTCGGCTCAGGCCTACGGCATGAACGACGAGTTTTCTAGGGTTTTGAGCCAGCAAATGGAGTACTACTCCAACGATCCTAATGCGGATAGGATTAATCGGCTCAAAGGCGAAATGAGCCAGGTGCGGAATGTGATGATTGAGAACATTGACAAAGTTTTGGACAGAGGTGATCGGTTGGAATTGCTGGTCGATAAAACTGCTAATATGCAAGGCAATACCTTTCGATTCCGAAAACAAGCTCGCCGTTTCAGAAGTACTGTTTGGTGGAGAAATGTTAAGCTCACGATTGCATTGATATTCCTTGTGCTATTGGTAGTTTATATCGTGATGGCCTTTGTTTGCCATGGCCTTTTACTACCCACCTGCTTGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0001101 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0006810 GO:0006887 GO:0006906 GO:0006950 GO:0006970 GO:0006996 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010118 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0030897 GO:0031090 GO:0031201 GO:0032940 GO:0032991 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046903 GO:0048284 GO:0050896 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0071944 GO:0090174 GO:0097305 GO:0098588 GO:0098796 GO:0098805 GO:0099023 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

Longin Synaptobrevin

Protein Analysis

220

Amino Acids

25.16

Weight (kDa)

9.37

Isoelectric Point (pI)

39.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Longin	PF13774	29 - 108	8.3e-24	Regulated-SNARE-like domain
Synaptobrevin	PF00957	126 - 205	5.2e-29	Synaptobrevin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25340 AT4G32150 AT5G11150 AT5G11150
fragaria_vesca	FvH4_2g28860 FvH4_2g28860
malus_domestica	MD08G1156200.v1.1 MD15G1126900.v1.1
prunus_persica	Prupe.1G482600_v2.0.a1
pyrus_communis	pycom08g12810 pycom15g11450
rosa_chinensis	RchiOBHm_Chr6g0297631
rosa_laevigata	RLG00000011575
rosa_multiflora	Rmu_sc0008915.1_g000009
rosa_roxburghii	Rroxscaffold_7G00170300
rosa_rugosa	Rorug06G0274800
rosa_samantha	Rh6BG393400 Rh6CG399200 Rh6DG385800
rosa_wichuraiana	Rw6G033570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	659
AasI	GACNNNNNNGTC	1 cut(s)	128
Acc36I	ACCTGC	1 cut(s)	659
AccB7I	CCANNNNNTGG	1 cut(s)	343
AccII	CGCG	3 cut(s)	28, 88, 279
AciI	CCGC	6 cut(s)	28, 78, 210, 277, 371, 412
AclWI	GGATC	2 cut(s)	40, 356
AcoI	YGGCCR	2 cut(s)	198, 274
AcsI	RAATTY	1 cut(s)	93
AfaI	GTAC	2 cut(s)	350, 544
AfiI	CCNNNNNNNGG	3 cut(s)	196, 216, 343
AgsI	TTSAA	1 cut(s)	242
AjiI	CACGTC	2 cut(s)	130, 163
AjnI	CCWGG	1 cut(s)	405
AjuI	GAANNNNNNNTTGG	2 cut(s)	532, 564
AleI	CACNNNNGTG	1 cut(s)	20
AluBI	AGCT	3 cut(s)	270, 527, 568
AluI	AGCT	3 cut(s)	270, 527, 568
Alw21I	GWGCWC	2 cut(s)	45, 288
Alw26I	GTCTC	2 cut(s)	136, 200
AlwI	GGATC	2 cut(s)	40, 356
Ama87I	CYCGRG	1 cut(s)	98
AoxI	GGCC	6 cut(s)	178, 198, 274, 297, 618, 634
ApoI	RAATTY	1 cut(s)	93
AseI	ATTAAT	1 cut(s)	381
AspLEI	GCGC	5 cut(s)	28, 59, 90, 171, 281
AsuHPI	GGTGA	3 cut(s)	100, 175, 467
AvaI	CYCGRG	1 cut(s)	98
BauI	CACGAG	1 cut(s)	20
BbsI	GAAGAC	1 cut(s)	249
Bbv12I	GWGCWC	2 cut(s)	45, 288
BccI	CCATC	3 cut(s)	89, 170, 610
BceAI	ACGGC	5 cut(s)	78, 266, 289, 319, 516
BcgI	CGANNNNNNTGC	4 cut(s)	350, 384, 467, 501
BciT130I	CCWGG	1 cut(s)	407
BcoDI	GTCTC	2 cut(s)	136, 200
BfaI	CTAG	1 cut(s)	324
BfoI	RGCGCY	1 cut(s)	60
BfuAI	ACCTGC	1 cut(s)	659
BisI	GCNGC	1 cut(s)	277
BlsI	GCNGC	1 cut(s)	278
BmcAI	AGTACT	2 cut(s)	350, 544
Bme1390I	CCNGG	1 cut(s)	407
BmeT110I	CYCGRG	1 cut(s)	98
BmgBI	CACGTC	2 cut(s)	130, 163
BmrFI	CCNGG	1 cut(s)	407
BpiI	GAAGAC	1 cut(s)	249
BplI	GAGNNNNNCTC	2 cut(s)	338, 370
Bpu10I	CCTNAGC	1 cut(s)	294
BsaI	GGTCTC	1 cut(s)	200
BsaJI	CCNNGG	2 cut(s)	60, 631
BsaXI	ACNNNNNCTCC	2 cut(s)	107, 137
Bsc4I	CCNNNNNNNGG	3 cut(s)	196, 216, 343
Bse118I	RCCGGY	2 cut(s)	110, 212
BseBI	CCWGG	1 cut(s)	407
BseDI	CCNNGG	2 cut(s)	60, 631
BseGI	GGATG	1 cut(s)	246
BseLI	CCNNNNNNNGG	3 cut(s)	196, 216, 343
BseMII	CTCAG	1 cut(s)	308
BseRI	GAGGAG	1 cut(s)	280
BseX3I	CGGCCG	1 cut(s)	274
Bsh1236I	CGCG	3 cut(s)	28, 88, 279
Bsh1285I	CGRYCG	1 cut(s)	277
BshFI	GGCC	6 cut(s)	180, 200, 276, 299, 620, 636
BsiEI	CGRYCG	1 cut(s)	277
BsiHKAI	GWGCWC	2 cut(s)	45, 288
BsiHKCI	CYCGRG	1 cut(s)	98
BsiSI	CCGG	2 cut(s)	111, 213
BslI	CCNNNNNNNGG	3 cut(s)	196, 216, 343
BsmAI	GTCTC	2 cut(s)	136, 200
BsmBI	CGTCTC	1 cut(s)	136
BsmI	GAATGC	1 cut(s)	228
BsnI	GGCC	6 cut(s)	180, 200, 276, 299, 620, 636
Bso31I	GGTCTC	1 cut(s)	200
BsoBI	CYCGRG	1 cut(s)	98
Bsp1286I	GDGCHC	2 cut(s)	45, 288
Bsp143I	GATC	5 cut(s)	32, 105, 145, 361, 457
Bsp19I	CCATGG	1 cut(s)	631
BspACI	CCGC	6 cut(s)	28, 78, 210, 277, 371, 412
BspANI	GGCC	6 cut(s)	180, 200, 276, 299, 620, 636
BspCNI	CTCAG	1 cut(s)	307
BspFNI	CGCG	3 cut(s)	28, 88, 279
BspMI	ACCTGC	1 cut(s)	659
BspPI	GGATC	2 cut(s)	40, 356
BspTNI	GGTCTC	1 cut(s)	200
BsrFI	RCCGGY	2 cut(s)	110, 212
BssAI	RCCGGY	2 cut(s)	110, 212
BssECI	CCNNGG	2 cut(s)	60, 631
BssMI	GATC	5 cut(s)	32, 105, 145, 361, 457
BssSI	CACGAG	1 cut(s)	20
BssT1I	CCWWGG	1 cut(s)	631
Bst2BI	CACGAG	1 cut(s)	20
Bst2UI	CCWGG	1 cut(s)	407
Bst4CI	ACNGT	2 cut(s)	187, 547
BstC8I	GCNNGC	4 cut(s)	45, 214, 338, 529
BstDEI	CTNAG	1 cut(s)	294
BstDSI	CCRYGG	2 cut(s)	60, 631
BstF5I	GGATG	1 cut(s)	246
BstFNI	CGCG	3 cut(s)	28, 88, 279
BstH2I	RGCGCY	1 cut(s)	60
BstHHI	GCGC	5 cut(s)	28, 59, 90, 171, 281
BstKTI	GATC	5 cut(s)	35, 108, 148, 364, 460
BstMAI	GTCTC	2 cut(s)	136, 200
BstMBI	GATC	5 cut(s)	32, 105, 145, 361, 457
BstMCI	CGRYCG	1 cut(s)	277
BstMWI	GCNNNNNNNGC	4 cut(s)	71, 177, 276, 402
BstNI	CCWGG	1 cut(s)	407
BstSCI	CCNGG	1 cut(s)	405
BstUI	CGCG	3 cut(s)	28, 88, 279
BstV2I	GAAGAC	1 cut(s)	249
BstXI	CCANNNNNNTGG	1 cut(s)	655
BstZI	CGGCCG	1 cut(s)	274
BsuRI	GGCC	6 cut(s)	180, 200, 276, 299, 620, 636
BtgI	CCRYGG	2 cut(s)	60, 631
BtrI	CACGTC	2 cut(s)	130, 163
BtsCI	GGATG	1 cut(s)	246
BveI	ACCTGC	1 cut(s)	659
Cac8I	GCNNGC	4 cut(s)	45, 214, 338, 529
CfoI	GCGC	5 cut(s)	28, 59, 90, 171, 281
Cfr10I	RCCGGY	2 cut(s)	110, 212
Csp6I	GTAC	2 cut(s)	349, 543
CviAII	CATG	2 cut(s)	307, 632
CviQI	GTAC	2 cut(s)	349, 543
DdeI	CTNAG	1 cut(s)	294
DpnI	GATC	5 cut(s)	34, 107, 147, 363, 459
DpnII	GATC	5 cut(s)	32, 105, 145, 361, 457
DrdI	GACNNNNNNGTC	1 cut(s)	128
DseDI	GACNNNNNNGTC	1 cut(s)	128
EaeI	YGGCCR	2 cut(s)	198, 274
EagI	CGGCCG	1 cut(s)	274
EciI	GGCGGA	1 cut(s)	67
EclXI	CGGCCG	1 cut(s)	274
Eco130I	CCWWGG	1 cut(s)	631
Eco147I	AGGCCT	1 cut(s)	299
Eco31I	GGTCTC	1 cut(s)	200
Eco52I	CGGCCG	1 cut(s)	274
Eco88I	CYCGRG	1 cut(s)	98
EcoRII	CCWGG	1 cut(s)	405
EcoT14I	CCWWGG	1 cut(s)	631
ErhI	CCWWGG	1 cut(s)	631
Esp3I	CGTCTC	1 cut(s)	136
FaeI	CATG	2 cut(s)	310, 635
FaiI	YATR	5 cut(s)	197, 308, 494, 609, 633
FatI	CATG	2 cut(s)	306, 631
FauI	CCCGC	1 cut(s)	21
Fnu4HI	GCNGC	1 cut(s)	277
FokI	GGATG	1 cut(s)	233
Fsp4HI	GCNGC	1 cut(s)	277
FspBI	CTAG	1 cut(s)	324
GlaI	GCGC	5 cut(s)	27, 58, 89, 170, 280
GluI	GCNGC	1 cut(s)	277
HaeII	RGCGCY	1 cut(s)	60
HaeIII	GGCC	6 cut(s)	180, 200, 276, 299, 620, 636
HapII	CCGG	2 cut(s)	111, 213
HhaI	GCGC	5 cut(s)	28, 59, 90, 171, 281
Hin1II	CATG	2 cut(s)	310, 635
Hin6I	GCGC	5 cut(s)	26, 57, 88, 169, 279
HinP1I	GCGC	5 cut(s)	26, 57, 88, 169, 279
HinfI	GANTC	3 cut(s)	122, 258, 513
HpaII	CCGG	2 cut(s)	111, 213
HphI	GGTGA	3 cut(s)	100, 175, 467
Hpy188I	TCNGA	2 cut(s)	518, 539
Hpy188III	TCNNGA	6 cut(s)	98, 100, 239, 262, 571, 613
Hpy99I	CGWCG	2 cut(s)	206, 317
HpyCH4III	ACNGT	2 cut(s)	187, 547
HpyCH4IV	ACGT	2 cut(s)	129, 162
HpyCH4V	TGCA	2 cut(s)	496, 578
HpyF10VI	GCNNNNNNNGC	4 cut(s)	71, 177, 276, 402
HpyF3I	CTNAG	1 cut(s)	294
HpySE526I	ACGT	2 cut(s)	129, 162
Hsp92II	CATG	2 cut(s)	310, 635
HspAI	GCGC	5 cut(s)	26, 57, 88, 169, 279
KroI	GCCGGC	1 cut(s)	212
KroNI	GCCGGC	1 cut(s)	214
Kzo9I	GATC	5 cut(s)	32, 105, 145, 361, 457
LmnI	GCTCC	1 cut(s)	267
LpnPI	CCDG	9 cut(s)	124, 202, 226, 266, 281, 350, 392, 419, 458
MaeI	CTAG	1 cut(s)	324
MaeII	ACGT	2 cut(s)	129, 162
MalI	GATC	5 cut(s)	34, 107, 147, 363, 459
MboI	GATC	5 cut(s)	32, 105, 145, 361, 457
MboII	GAAGA	3 cut(s)	115, 148, 254
MhlI	GDGCHC	2 cut(s)	45, 288
MluCI	AATT	2 cut(s)	93, 467
MlyI	GAGTC	1 cut(s)	116
MmeI	TCCRAC	2 cut(s)	381, 444
MnlI	CCTC	5 cut(s)	85, 191, 200, 258, 446
MroNI	GCCGGC	1 cut(s)	212
MseI	TTAA	2 cut(s)	381, 564
MslI	CAYNNNNRTG	1 cut(s)	20
MspI	CCGG	2 cut(s)	111, 213
MspR9I	CCNGG	1 cut(s)	407
Mva1269I	GAATGC	1 cut(s)	228
MvaI	CCWGG	1 cut(s)	407
MvnI	CGCG	3 cut(s)	28, 88, 279
MwoI	GCNNNNNNNGC	4 cut(s)	71, 177, 276, 402
NaeI	GCCGGC	1 cut(s)	214
NcoI	CCATGG	1 cut(s)	631
NdeII	GATC	5 cut(s)	32, 105, 145, 361, 457
NgoMIV	GCCGGC	1 cut(s)	212
NlaIII	CATG	2 cut(s)	310, 635
NmeAIII	GCCGAG	2 cut(s)	73, 269
OliI	CACNNNNGTG	1 cut(s)	20
PaeR7I	CTCGAG	1 cut(s)	98
PaqCI	CACCTGC	1 cut(s)	659
PceI	AGGCCT	1 cut(s)	299
PcsI	WCGNNNNNNNCGW	2 cut(s)	279, 309
PctI	GAATGC	1 cut(s)	228
PdiI	GCCGGC	1 cut(s)	214
PfeI	GAWTC	2 cut(s)	258, 513
PflMI	CCANNNNNTGG	1 cut(s)	343
PkrI	GCNGC	1 cut(s)	278
PleI	GAGTC	1 cut(s)	116
PpsI	GAGTC	1 cut(s)	116
PshBI	ATTAAT	1 cut(s)	381
Psp6I	CCWGG	1 cut(s)	405
PspGI	CCWGG	1 cut(s)	405
RsaI	GTAC	2 cut(s)	350, 544
RsaNI	GTAC	2 cut(s)	349, 543
RseI	CAYNNNNRTG	1 cut(s)	20
SaqAI	TTAA	2 cut(s)	381, 564
SatI	GCNGC	1 cut(s)	277
Sau3AI	GATC	5 cut(s)	32, 105, 145, 361, 457
ScaI	AGTACT	2 cut(s)	350, 544
SchI	GAGTC	1 cut(s)	116
ScrFI	CCNGG	1 cut(s)	407
SduI	GDGCHC	2 cut(s)	45, 288
SetI	ASST	9 cut(s)	132, 165, 272, 411, 457, 509, 529, 570, 653
Sfr274I	CTCGAG	1 cut(s)	98
SgrAI	CRCCGGYG	1 cut(s)	110
SlaI	CTCGAG	1 cut(s)	98
SmiMI	CAYNNNNRTG	1 cut(s)	20
SmlI	CTYRAG	1 cut(s)	98
SmoI	CTYRAG	1 cut(s)	98
Sse9I	AATT	2 cut(s)	93, 467
SseBI	AGGCCT	1 cut(s)	299
SsiI	CCGC	6 cut(s)	28, 78, 210, 277, 371, 412
SspMI	CTAG	1 cut(s)	324
StuI	AGGCCT	1 cut(s)	299
StyD4I	CCNGG	1 cut(s)	405
StyI	CCWWGG	1 cut(s)	631
TaaI	ACNGT	2 cut(s)	187, 547
TaiI	ACGT	2 cut(s)	132, 165
TaqI	TCGA	3 cut(s)	99, 477, 511
TasI	AATT	2 cut(s)	93, 467
TatI	WGTACW	2 cut(s)	348, 542
TauI	GCSGC	1 cut(s)	279
TfiI	GAWTC	2 cut(s)	258, 513
Tru1I	TTAA	2 cut(s)	381, 564
Tru9I	TTAA	2 cut(s)	381, 564
TspDTI	ATGAA	1 cut(s)	323
Van91I	CCANNNNNTGG	1 cut(s)	343
VspI	ATTAAT	1 cut(s)	381
XapI	RAATTY	1 cut(s)	93
XhoI	CTCGAG	1 cut(s)	98
XspI	CTAG	1 cut(s)	324
ZrmI	AGTACT	2 cut(s)	350, 544

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.