AT2G25670

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0012836
Physical Location & Seq
Reverse (-)
10928586 .. 10931090
2505 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G25670.1

Sequence Viewer

Length: 957 bp
ATGGCTGGAGGTGGAAACAGGAGAGATGAAGGATCGATCACGATCCAGAGCACTAATTTGTTTGCAGCATTGGACACTCGTAAGAAGAAGAAGAAGTCTGACAAGGCAGGGAAGAGCAAAGGGTCTTCTAAGTCACGAGAGCCAGAGAAGGAGCCTGAGCCTCAGGTCTATTGGGCTCCTACGCCTTTGAAAGTTAAGTCTTGGGCTGATATTGATGATGAAGACGACGATGATGACTATTATGCAACCACTGCTCCTCCTCAGTCTGGTTGGAGTACTTCTCTGCCTTCCCATACTGATTCCAAAGACGTTCATGTTGAGGAAAGTGAAAGTGAGGAAGATATTCTTGATGAAGGTGATGATGATGTGGAGGAAGAGCAGGAACAGGAAACAGAGGTACAGGTTCATCCAGAGCCTGAGGTGAAGAAAGCTCCTGAAGTTCCTGCACCTCCTAAAGAGGCAGAGAGGCAACTTTCCAAGAAAGAGAGGAAAAAGAAGGAACTTGCTGAGCTTGAAGCTTTGTTGGCTGATTTTGGAGTTGCCCCCAAGGAGAACAATGGCCTAGAGGAATCTCAAGAGGCTGGACAAGAAAAGAAAGAAGATGTCAATGGAGAGGGAGAGAAGAAGGAGAATGCAGCAGGTGGGGAGTCAAAGGCATCAAAAAAGAAGAAAAAGAAGGATAAGCAGAAGGAGGTAAAAGAATCTCAAGAGCAACAAGCAAACAACAATGCCGATGCTGTAGATGAAGCTGCTGGGTCTGAACCAACTGAGGAAGAATCTCCAATTGACGTCAAGGAAAGGATAAAGAAGCTTGCATCCATGAAGAAGAAGAAGTCAGGCAAAGAGGTGGATGCTGCAGCTAAAGCTGCTGCGGAGGAGGCAGCTGCAAGACGTAAGAAGCTGGCCGCGGCAAAGAAGAAGGAGAAGAATCACTATAACCAACAGCCTGTGCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

318

Amino Acids

35.13

Weight (kDa)

5.13

Isoelectric Point (pI)

54.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012836)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25670 AT2G25670 AT4G32610
fragaria_vesca FvH4_2g30190
malus_domestica MD15G1114900.v1.1
prunus_persica Prupe.1G466300_v2.0.a1 Prupe.1G466300_v2.0.a1
pyrus_communis pycom15g10350
rosa_chinensis RchiOBHm_Chr6g0312721
rosa_multiflora Rmu_ssc0000412.1_g000011
rosa_roxburghii Rroxscaffold_7G00156560
rosa_rugosa Rorug06G0398600 Rorug06G0398800
rosa_samantha Rh6AG516000 Rh6BG527300 Rh6CG532200 Rh6DG518300
rosa_wichuraiana Rw6G044830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 629
AatII GACGTC 1 cut(s) 792
Acc36I ACCTGC 1 cut(s) 629
AccII CGCG 1 cut(s) 908
AciI CCGC 4 cut(s) 872, 906, 908, 952
AclWI GGATC 2 cut(s) 37, 40
AcoI YGGCCR 1 cut(s) 903
AcuI CTGAAG 1 cut(s) 456
AcyI GRCGYC 1 cut(s) 789
AfaI GTAC 2 cut(s) 277, 399
AfiI CCNNNNNNNGG 1 cut(s) 266
AgsI TTSAA 2 cut(s) 190, 515
AluBI AGCT 9 cut(s) 431, 511, 518, 749, 811, 860, 866, 884, 901
AluI AGCT 9 cut(s) 431, 511, 518, 749, 811, 860, 866, 884, 901
Alw21I GWGCWC 1 cut(s) 53
AlwI GGATC 2 cut(s) 37, 40
AlwNI CAGNNNCTG 1 cut(s) 416
AoxI GGCC 2 cut(s) 559, 903
ApeKI GCWGC 9 cut(s) 65, 635, 749, 854, 857, 866, 869, 881, 884
Asp700I GAANNNNTTC 1 cut(s) 342
AsuHPI GGTGA 2 cut(s) 368, 433
AxyI CCTNAGG 2 cut(s) 162, 417
BanII GRGCYC 1 cut(s) 178
BauI CACGAG 1 cut(s) 135
BbsI GAAGAC 2 cut(s) 117, 228
Bbv12I GWGCWC 1 cut(s) 53
BbvI GCAGC 9 cut(s) 77, 647, 736, 841, 853, 856, 869, 871, 893
BfaI CTAG 1 cut(s) 563
BfmI CTRYAG 2 cut(s) 738, 855
BfuAI ACCTGC 1 cut(s) 629
BlpI GCTNAGC 1 cut(s) 507
BmcAI AGTACT 1 cut(s) 277
BmiI GGNNCC 2 cut(s) 153, 177
BmsI GCATC 4 cut(s) 665, 724, 824, 841
BpiI GAAGAC 2 cut(s) 117, 228
BplI GAGNNNNNCTC 2 cut(s) 265, 297
BpmI CTGGAG 1 cut(s) 27
Bpu10I CCTNAGC 1 cut(s) 156
Bpu1102I GCTNAGC 1 cut(s) 507
BpuEI CTTGAG 2 cut(s) 558, 690
Bsa29I ATCGAT 1 cut(s) 35
BsaBI GATNNNNATC 1 cut(s) 41
BsaHI GRCGYC 1 cut(s) 789
BsaJI CCNNGG 2 cut(s) 546, 906
BsaXI ACNNNNNCTCC 4 cut(s) 238, 241, 268, 271
Bsc4I CCNNNNNNNGG 1 cut(s) 266
Bse21I CCTNAGG 2 cut(s) 162, 417
Bse8I GATNNNNATC 1 cut(s) 41
BseCI ATCGAT 1 cut(s) 35
BseDI CCNNGG 2 cut(s) 546, 906
BseGI GGATG 3 cut(s) 406, 815, 856
BseJI GATNNNNATC 1 cut(s) 41
BseLI CCNNNNNNNGG 1 cut(s) 266
BseMII CTCAG 6 cut(s) 147, 176, 275, 408, 498, 759
BseRI GAGGAG 3 cut(s) 246, 249, 890
BseXI GCAGC 9 cut(s) 77, 647, 736, 841, 853, 856, 869, 871, 893
BseYI CCCAGC 1 cut(s) 752
BsgI GTGCAG 1 cut(s) 429
Bsh1236I CGCG 1 cut(s) 908
BshFI GGCC 2 cut(s) 561, 905
BshVI ATCGAT 1 cut(s) 35
BsiHKAI GWGCWC 1 cut(s) 53
BslI CCNNNNNNNGG 1 cut(s) 266
BsmI GAATGC 1 cut(s) 637
BsnI GGCC 2 cut(s) 561, 905
Bsp1286I GDGCHC 2 cut(s) 53, 178
Bsp143I GATC 3 cut(s) 32, 36, 42
Bsp1720I GCTNAGC 1 cut(s) 507
BspACI CCGC 4 cut(s) 872, 906, 908, 952
BspANI GGCC 2 cut(s) 561, 905
BspCNI CTCAG 6 cut(s) 148, 175, 274, 409, 499, 760
BspDI ATCGAT 1 cut(s) 35
BspFNI CGCG 1 cut(s) 908
BspLI GGNNCC 2 cut(s) 153, 177
BspMAI CTGCAG 1 cut(s) 859
BspMI ACCTGC 1 cut(s) 629
BspPI GGATC 2 cut(s) 37, 40
BspQI GCTCTTC 2 cut(s) 107, 369
BssECI CCNNGG 2 cut(s) 546, 906
BssMI GATC 3 cut(s) 32, 36, 42
BssNI GRCGYC 1 cut(s) 789
BssSI CACGAG 1 cut(s) 135
BssT1I CCWWGG 1 cut(s) 546
Bst2BI CACGAG 1 cut(s) 135
Bst6I CTCTTC 2 cut(s) 107, 369
BstACI GRCGYC 1 cut(s) 789
BstAPI GCANNNNNTGC 1 cut(s) 251
BstC8I GCNNGC 2 cut(s) 813, 903
BstDEI CTNAG 7 cut(s) 129, 156, 162, 261, 417, 507, 768
BstDSI CCRYGG 1 cut(s) 906
BstF5I GGATG 3 cut(s) 406, 815, 856
BstFNI CGCG 1 cut(s) 908
BstKTI GATC 3 cut(s) 35, 39, 45
BstMBI GATC 3 cut(s) 32, 36, 42
BstMWI GCNNNNNNNGC 5 cut(s) 251, 524, 863, 866, 878
BstSFI CTRYAG 2 cut(s) 738, 855
BstUI CGCG 1 cut(s) 908
BstV1I GCAGC 9 cut(s) 77, 647, 736, 841, 853, 856, 869, 871, 893
BstV2I GAAGAC 2 cut(s) 117, 228
Bsu15I ATCGAT 1 cut(s) 35
Bsu36I CCTNAGG 2 cut(s) 162, 417
BsuRI GGCC 2 cut(s) 561, 905
BsuTUI ATCGAT 1 cut(s) 35
BtgI CCRYGG 1 cut(s) 906
BtsCI GGATG 3 cut(s) 406, 815, 856
BtsI GCAGTG 1 cut(s) 249
BtsIMutI CAGTG 1 cut(s) 249
BveI ACCTGC 1 cut(s) 629
Cac8I GCNNGC 2 cut(s) 813, 903
CaiI CAGNNNCTG 1 cut(s) 416
Cfr42I CCGCGG 1 cut(s) 909
ClaI ATCGAT 1 cut(s) 35
Csp6I GTAC 2 cut(s) 276, 398
CviAII CATG 2 cut(s) 314, 820
CviQI GTAC 2 cut(s) 276, 398
DdeI CTNAG 7 cut(s) 129, 156, 162, 261, 417, 507, 768
DpnI GATC 3 cut(s) 34, 38, 44
DpnII GATC 3 cut(s) 32, 36, 42
EaeI YGGCCR 1 cut(s) 903
Eam1104I CTCTTC 2 cut(s) 107, 369
EarI CTCTTC 2 cut(s) 107, 369
Eco130I CCWWGG 1 cut(s) 546
Eco24I GRGCYC 1 cut(s) 178
Eco57I CTGAAG 1 cut(s) 456
Eco81I CCTNAGG 2 cut(s) 162, 417
EcoT14I CCWWGG 1 cut(s) 546
EcoT38I GRGCYC 1 cut(s) 178
ErhI CCWWGG 1 cut(s) 546
FaeI CATG 2 cut(s) 317, 823
FaiI YATR 5 cut(s) 243, 294, 315, 821, 936
FalI AAGNNNNNCTT 2 cut(s) 330, 362
FatI CATG 2 cut(s) 313, 819
FokI GGATG 3 cut(s) 393, 802, 863
FriOI GRGCYC 1 cut(s) 178
FspBI CTAG 1 cut(s) 563
GsaI CCCAGC 1 cut(s) 756
GsuI CTGGAG 1 cut(s) 27
HaeIII GGCC 2 cut(s) 561, 905
Hin1I GRCGYC 1 cut(s) 789
Hin1II CATG 2 cut(s) 317, 823
HindIII AAGCTT 2 cut(s) 516, 809
HinfI GANTC 6 cut(s) 299, 569, 647, 701, 776, 928
HphI GGTGA 2 cut(s) 368, 433
Hpy188I TCNGA 2 cut(s) 100, 760
Hpy188III TCNNGA 8 cut(s) 40, 46, 135, 347, 410, 434, 575, 707
Hpy99I CGWCG 1 cut(s) 230
HpyAV CCTTC 9 cut(s) 23, 142, 297, 347, 490, 619, 670, 682, 913
HpyCH4IV ACGT 3 cut(s) 309, 789, 892
HpyCH4V TGCA 7 cut(s) 65, 245, 446, 635, 815, 857, 887
HpyF10VI GCNNNNNNNGC 5 cut(s) 251, 524, 863, 866, 878
HpyF3I CTNAG 7 cut(s) 129, 156, 162, 261, 417, 507, 768
HpySE526I ACGT 3 cut(s) 309, 789, 892
Hsp92I GRCGYC 1 cut(s) 789
Hsp92II CATG 2 cut(s) 317, 823
KspI CCGCGG 1 cut(s) 909
Kzo9I GATC 3 cut(s) 32, 36, 42
LguI GCTCTTC 2 cut(s) 107, 369
LmnI GCTCC 4 cut(s) 151, 181, 259, 436
Lsp1109I GCAGC 9 cut(s) 77, 647, 736, 841, 853, 856, 869, 871, 893
LweI GCATC 4 cut(s) 665, 724, 824, 841
MaeI CTAG 1 cut(s) 563
MaeII ACGT 3 cut(s) 309, 789, 892
MaeIII GTNAC 1 cut(s) 132
MalI GATC 3 cut(s) 34, 38, 44
MboI GATC 3 cut(s) 32, 36, 42
MfeI CAATTG 1 cut(s) 783
MhlI GDGCHC 2 cut(s) 53, 178
MluCI AATT 2 cut(s) 55, 783
MlyI GAGTC 1 cut(s) 656
MmeI TCCRAC 1 cut(s) 251
MroXI GAANNNNTTC 1 cut(s) 342
MseI TTAA 1 cut(s) 195
MspA1I CMGCKG 2 cut(s) 884, 908
MunI CAATTG 1 cut(s) 783
Mva1269I GAATGC 1 cut(s) 637
MvnI CGCG 1 cut(s) 908
MwoI GCNNNNNNNGC 5 cut(s) 251, 524, 863, 866, 878
NdeII GATC 3 cut(s) 32, 36, 42
NlaIII CATG 2 cut(s) 317, 823
NlaIV GGNNCC 2 cut(s) 153, 177
NmuCI GTSAC 1 cut(s) 132
PaqCI CACCTGC 1 cut(s) 629
PciSI GCTCTTC 2 cut(s) 107, 369
PctI GAATGC 1 cut(s) 637
PdmI GAANNNNTTC 1 cut(s) 342
PfeI GAWTC 5 cut(s) 299, 569, 701, 776, 928
PleI GAGTC 1 cut(s) 655
PpsI GAGTC 1 cut(s) 655
PspFI CCCAGC 1 cut(s) 752
PspN4I GGNNCC 2 cut(s) 153, 177
PstI CTGCAG 1 cut(s) 859
PstNI CAGNNNCTG 1 cut(s) 416
PvuII CAGCTG 1 cut(s) 884
RsaI GTAC 2 cut(s) 277, 399
RsaNI GTAC 2 cut(s) 276, 398
SacII CCGCGG 1 cut(s) 909
SapI GCTCTTC 2 cut(s) 107, 369
SaqAI TTAA 1 cut(s) 195
Sau3AI GATC 3 cut(s) 32, 36, 42
ScaI AGTACT 1 cut(s) 277
SchI GAGTC 1 cut(s) 656
SduI GDGCHC 2 cut(s) 53, 178
SfaNI GCATC 4 cut(s) 665, 724, 824, 841
SfcI CTRYAG 2 cut(s) 738, 855
Sfr303I CCGCGG 1 cut(s) 909
SgrBI CCGCGG 1 cut(s) 909
SmlI CTYRAG 2 cut(s) 573, 705
SmoI CTYRAG 2 cut(s) 573, 705
Sse9I AATT 2 cut(s) 55, 783
SsiI CCGC 4 cut(s) 872, 906, 908, 952
SspMI CTAG 1 cut(s) 563
StyI CCWWGG 1 cut(s) 546
TaiI ACGT 3 cut(s) 312, 792, 895
TaqI TCGA 1 cut(s) 35
TasI AATT 2 cut(s) 55, 783
TatI WGTACW 1 cut(s) 275
TauI GCSGC 2 cut(s) 908, 911
TfiI GAWTC 5 cut(s) 299, 569, 701, 776, 928
Tru1I TTAA 1 cut(s) 195
Tru9I TTAA 1 cut(s) 195
TscAI CASTG 1 cut(s) 256
TseFI GTSAC 1 cut(s) 132
TseI GCWGC 9 cut(s) 65, 635, 749, 854, 857, 866, 869, 881, 884
Tsp45I GTSAC 1 cut(s) 132
TspDTI ATGAA 7 cut(s) 42, 234, 302, 366, 395, 759, 836
TspRI CASTG 1 cut(s) 256
XmnI GAANNNNTTC 1 cut(s) 342
XspI CTAG 1 cut(s) 563
ZraI GACGTC 1 cut(s) 790
ZrmI AGTACT 1 cut(s) 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.