Rorug06G0398800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0012836
Physical Location & Seq
Forward (+)
54395992 .. 54402353
6362 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0398800.1

Sequence Viewer

Length: 639 bp
ATGGAGGAGGGAGGCAGCAGCTCCACGGTGATACCAGATTCAGTGATGGAGTCAGTAAAGAGAAGCATGGGACATGTAGAACAAGTAGGAGCCGAGTTGCCCCAATTCTTGGCTCTCTGTTCTGACCCCCAAGTCCTCGCCCAATTGCCGCCTCTTCAGCGTGCCCACTCACTTCTCTTGCTCTCCAATCTCACTACCACTCTATTCACCCTCAGGTTGAGGTGCAGTGGAGTATACGATGACGACCACCGCGTCAACACCGAGCTTGAGAGGTTAAAATTGTATCAGGAGAAGCTACAGCGTTTCATAGATCTGAGCAAAGCACCATTGCGACCATCCACCACTTTAAATTATCAGGCAGCAACCCGTTTCATCGAGCATTCTCTGCCAGACCTCACCCAAGATCAGAGGCAGGGTATGAGAGATATTAGTAAAGCAGAGGGGAAAAAGATGAAGCATCTGGAAAGGAATGTTCAAAAGAAGAGGAAGTATGAATCACCTAACAGACAATCAGTTCAATCTGCTGCCAAGGATTTCCTAGAGAAAGCTGCTCGTGAGCTTCTTGGTGATGACAATGGTGGTCTTAAGGGACCTCTAAGGGCTGAGTTCTCAGACACAGATAAGCTGAATTTGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

212

Amino Acids

23.93

Weight (kDa)

7.78

Isoelectric Point (pI)

43.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sas10_Utp3 PF04000 26 - 98 2.5e-07 Sas10/Utp3/C1D family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012836)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25670 AT2G25670 AT4G32610
fragaria_vesca FvH4_2g30190
malus_domestica MD15G1114900.v1.1
prunus_persica Prupe.1G466300_v2.0.a1 Prupe.1G466300_v2.0.a1
pyrus_communis pycom15g10350
rosa_chinensis RchiOBHm_Chr6g0312721
rosa_multiflora Rmu_ssc0000412.1_g000011
rosa_roxburghii Rroxscaffold_7G00156560
rosa_rugosa Rorug06G0398600 Rorug06G0398800
rosa_samantha Rh6AG516000 Rh6BG527300 Rh6CG532200 Rh6DG518300
rosa_wichuraiana Rw6G044830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 131, 251
AccB7I CCANNNNNTGG 1 cut(s) 109
AccI GTMKAC 1 cut(s) 234
AccII CGCG 1 cut(s) 252
AciI CCGC 2 cut(s) 149, 250
AcsI RAATTY 1 cut(s) 628
AcuI CTGAAG 1 cut(s) 140
AfiI CCNNNNNNNGG 1 cut(s) 109
AflII CTTAAG 1 cut(s) 584
AflIII ACRYGT 1 cut(s) 73
AgsI TTSAA 2 cut(s) 476, 518
AluBI AGCT 6 cut(s) 21, 265, 295, 548, 559, 625
AluI AGCT 6 cut(s) 21, 265, 295, 548, 559, 625
ApeKI GCWGC 5 cut(s) 15, 18, 359, 524, 548
ApoI RAATTY 1 cut(s) 628
AspS9I GGNCC 1 cut(s) 590
AsuHPI GGTGA 5 cut(s) 40, 199, 388, 489, 578
AvaII GGWCC 1 cut(s) 590
AxyI CCTNAGG 1 cut(s) 212
BaeGI GKGCMC 1 cut(s) 166
BauI CACGAG 1 cut(s) 552
BbvI GCAGC 5 cut(s) 27, 30, 371, 511, 535
BccI CCATC 2 cut(s) 40, 343
BfaI CTAG 1 cut(s) 539
BfmI CTRYAG 1 cut(s) 296
BfrI CTTAAG 1 cut(s) 584
BglII AGATCT 1 cut(s) 310
BisI GCNGC 6 cut(s) 16, 19, 149, 360, 525, 549
BlsI GCNGC 6 cut(s) 17, 20, 150, 361, 526, 550
Bme18I GGWCC 1 cut(s) 590
BmgT120I GGNCC 1 cut(s) 590
BmiI GGNNCC 2 cut(s) 91, 591
BmsI GCATC 1 cut(s) 466
BpuEI CTTGAG 1 cut(s) 287
BsaJI CCNNGG 2 cut(s) 24, 528
Bsc4I CCNNNNNNNGG 1 cut(s) 109
Bse21I CCTNAGG 1 cut(s) 212
Bse3DI GCAATG 1 cut(s) 326
BseDI CCNNGG 2 cut(s) 24, 528
BseGI GGATG 1 cut(s) 335
BseLI CCNNNNNNNGG 1 cut(s) 109
BseMI GCAATG 1 cut(s) 326
BseMII CTCAG 4 cut(s) 226, 305, 594, 624
BseRI GAGGAG 1 cut(s) 20
BseSI GKGCMC 1 cut(s) 166
BseXI GCAGC 5 cut(s) 27, 30, 371, 511, 535
BsgI GTGCAG 1 cut(s) 244
Bsh1236I CGCG 1 cut(s) 252
BslFI GGGAC 2 cut(s) 84, 603
BslI CCNNNNNNNGG 1 cut(s) 109
BsmFI GGGAC 2 cut(s) 84, 603
BsmI GAATGC 1 cut(s) 379
Bsp1286I GDGCHC 1 cut(s) 166
Bsp143I GATC 2 cut(s) 310, 403
BspACI CCGC 2 cut(s) 149, 250
BspCNI CTCAG 4 cut(s) 225, 306, 595, 623
BspFNI CGCG 1 cut(s) 252
BspLI GGNNCC 2 cut(s) 91, 591
BspTI CTTAAG 1 cut(s) 584
BsrDI GCAATG 1 cut(s) 326
BssECI CCNNGG 2 cut(s) 24, 528
BssMI GATC 2 cut(s) 310, 403
BssNAI GTATAC 1 cut(s) 235
BssSI CACGAG 1 cut(s) 552
BssT1I CCWWGG 1 cut(s) 528
Bst1107I GTATAC 1 cut(s) 235
Bst2BI CACGAG 1 cut(s) 552
Bst4CI ACNGT 1 cut(s) 28
Bst6I CTCTTC 2 cut(s) 159, 476
BstAFI CTTAAG 1 cut(s) 584
BstAPI GCANNNNNTGC 1 cut(s) 385
BstC8I GCNNGC 1 cut(s) 162
BstDEI CTNAG 5 cut(s) 212, 314, 596, 603, 610
BstDSI CCRYGG 1 cut(s) 24
BstF5I GGATG 1 cut(s) 335
BstFNI CGCG 1 cut(s) 252
BstKTI GATC 2 cut(s) 313, 406
BstMBI GATC 2 cut(s) 310, 403
BstMWI GCNNNNNNNGC 2 cut(s) 157, 385
BstNSI RCATGY 1 cut(s) 77
BstSFI CTRYAG 1 cut(s) 296
BstSLI GKGCMC 1 cut(s) 166
BstUI CGCG 1 cut(s) 252
BstV1I GCAGC 5 cut(s) 27, 30, 371, 511, 535
BstX2I RGATCY 1 cut(s) 310
BstYI RGATCY 1 cut(s) 310
BstZ17I GTATAC 1 cut(s) 235
Bsu36I CCTNAGG 1 cut(s) 212
BtgI CCRYGG 1 cut(s) 24
BtsCI GGATG 1 cut(s) 335
BtsI GCAGTG 1 cut(s) 232
BtsIMutI CAGTG 2 cut(s) 48, 232
Cac8I GCNNGC 1 cut(s) 162
Cfr13I GGNCC 1 cut(s) 590
CseI GACGC 1 cut(s) 241
CviAII CATG 2 cut(s) 67, 74
CviJI RGCY 9 cut(s) 21, 92, 113, 265, 295, 548, 559, 602, 625
CviKI_1 RGCY 9 cut(s) 21, 92, 113, 265, 295, 548, 559, 602, 625
DdeI CTNAG 5 cut(s) 212, 314, 596, 603, 610
DpnI GATC 2 cut(s) 312, 405
DpnII GATC 2 cut(s) 310, 403
DraI TTTAAA 1 cut(s) 348
DrdI GACNNNNNNGTC 2 cut(s) 131, 251
DseDI GACNNNNNNGTC 2 cut(s) 131, 251
Eam1104I CTCTTC 2 cut(s) 159, 476
EarI CTCTTC 2 cut(s) 159, 476
Eco130I CCWWGG 1 cut(s) 528
Eco47I GGWCC 1 cut(s) 590
Eco57I CTGAAG 1 cut(s) 140
Eco81I CCTNAGG 1 cut(s) 212
EcoO109I RGGNCCY 1 cut(s) 590
EcoT14I CCWWGG 1 cut(s) 528
ErhI CCWWGG 1 cut(s) 528
FaeI CATG 2 cut(s) 70, 77
FaiI YATR 6 cut(s) 68, 75, 235, 308, 419, 492
FaqI GGGAC 2 cut(s) 84, 603
FatI CATG 2 cut(s) 66, 73
FblI GTMKAC 1 cut(s) 234
Fnu4HI GCNGC 6 cut(s) 16, 19, 149, 360, 525, 549
FokI GGATG 1 cut(s) 322
Fsp4HI GCNGC 6 cut(s) 16, 19, 149, 360, 525, 549
FspBI CTAG 1 cut(s) 539
GluI GCNGC 6 cut(s) 16, 19, 149, 360, 525, 549
HgaI GACGC 1 cut(s) 241
Hin1II CATG 2 cut(s) 70, 77
HincII GTYRAC 1 cut(s) 256
HindII GTYRAC 1 cut(s) 256
HinfI GANTC 3 cut(s) 38, 50, 494
HphI GGTGA 5 cut(s) 40, 199, 388, 489, 578
Hpy166II GTNNAC 2 cut(s) 235, 256
Hpy188I TCNGA 4 cut(s) 124, 315, 408, 613
Hpy188III TCNNGA 3 cut(s) 287, 461, 554
Hpy8I GTNNAC 2 cut(s) 235, 256
HpyCH4III ACNGT 1 cut(s) 28
HpyCH4V TGCA 1 cut(s) 225
HpyF10VI GCNNNNNNNGC 2 cut(s) 157, 385
HpyF3I CTNAG 5 cut(s) 212, 314, 596, 603, 610
Hsp92II CATG 2 cut(s) 70, 77
Kzo9I GATC 2 cut(s) 310, 403
LmnI GCTCC 2 cut(s) 26, 89
LpnPI CCDG 7 cut(s) 48, 199, 272, 341, 398, 402, 446
Lsp1109I GCAGC 5 cut(s) 27, 30, 371, 511, 535
LweI GCATC 1 cut(s) 466
MaeI CTAG 1 cut(s) 539
MalI GATC 2 cut(s) 312, 405
MboI GATC 2 cut(s) 310, 403
MboII GAAGA 2 cut(s) 146, 493
MfeI CAATTG 1 cut(s) 143
MflI RGATCY 1 cut(s) 310
MhlI GDGCHC 1 cut(s) 166
MluCI AATT 5 cut(s) 104, 143, 278, 349, 628
MlyI GAGTC 1 cut(s) 59
MseI TTAA 3 cut(s) 275, 347, 585
MspCI CTTAAG 1 cut(s) 584
MunI CAATTG 1 cut(s) 143
Mva1269I GAATGC 1 cut(s) 379
MvnI CGCG 1 cut(s) 252
MwoI GCNNNNNNNGC 2 cut(s) 157, 385
NdeII GATC 2 cut(s) 310, 403
NlaIII CATG 2 cut(s) 70, 77
NlaIV GGNNCC 2 cut(s) 91, 591
NmeAIII GCCGAG 1 cut(s) 118
NspI RCATGY 1 cut(s) 77
PciI ACATGT 1 cut(s) 73
PcsI WCGNNNNNNNCGW 1 cut(s) 249
PctI GAATGC 1 cut(s) 379
PfeI GAWTC 2 cut(s) 38, 494
PflMI CCANNNNNTGG 1 cut(s) 109
PkrI GCNGC 6 cut(s) 17, 20, 150, 361, 526, 550
PleI GAGTC 1 cut(s) 58
PpsI GAGTC 1 cut(s) 58
PpuMI RGGWCCY 1 cut(s) 590
PscI ACATGT 1 cut(s) 73
Psp5II RGGWCCY 1 cut(s) 590
PspN4I GGNNCC 2 cut(s) 91, 591
PspPI GGNCC 1 cut(s) 590
PspPPI RGGWCCY 1 cut(s) 590
PsuI RGATCY 1 cut(s) 310
SaqAI TTAA 3 cut(s) 275, 347, 585
SatI GCNGC 6 cut(s) 16, 19, 149, 360, 525, 549
Sau3AI GATC 2 cut(s) 310, 403
Sau96I GGNCC 1 cut(s) 590
SchI GAGTC 1 cut(s) 59
SduI GDGCHC 1 cut(s) 166
SfaNI GCATC 1 cut(s) 466
SfcI CTRYAG 1 cut(s) 296
SinI GGWCC 1 cut(s) 590
SmlI CTYRAG 2 cut(s) 266, 584
SmoI CTYRAG 2 cut(s) 266, 584
Sse9I AATT 5 cut(s) 104, 143, 278, 349, 628
SsiI CCGC 2 cut(s) 149, 250
SspMI CTAG 1 cut(s) 539
StyI CCWWGG 1 cut(s) 528
TaaI ACNGT 1 cut(s) 28
TaqI TCGA 1 cut(s) 375
TasI AATT 5 cut(s) 104, 143, 278, 349, 628
TauI GCSGC 1 cut(s) 151
TfiI GAWTC 2 cut(s) 38, 494
Tru1I TTAA 3 cut(s) 275, 347, 585
Tru9I TTAA 3 cut(s) 275, 347, 585
TscAI CASTG 2 cut(s) 48, 232
TseI GCWGC 5 cut(s) 15, 18, 359, 524, 548
TspDTI ATGAA 4 cut(s) 295, 361, 467, 507
TspRI CASTG 2 cut(s) 48, 232
Van91I CCANNNNNTGG 1 cut(s) 109
Vha464I CTTAAG 1 cut(s) 584
VpaK11BI GGWCC 1 cut(s) 590
XapI RAATTY 1 cut(s) 628
XceI RCATGY 1 cut(s) 77
XmiI GTMKAC 1 cut(s) 234
XspI CTAG 1 cut(s) 539
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.