AT4G32610

positive regulation of mitochondrial translation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0012836
Physical Location & Seq
Reverse (-)
15728084 .. 15730433
2350 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G32610.1

Sequence Viewer

Length: 948 bp
ATGGTTGGTGGTGGAAACAGGAGAGATGAGGGATCGATGCCGATTCAGAACACCAACTTGTTTGCTGCTTTGGATACTTCGAGGAAGAAGAAGAAGTCTGATAAGGCTGGTAAGAGCAAAGCTTCCTCTAAGAGAGAAGATTCACAGAAGGAGCCTGAGCCACAGGTTTTCTGGGCACCTACGCCTCTCAAAGCAAAGGCTTGGGCTGATATCGATAGCGATGATGAAGATGATGATTATTACGCTACCACTGCTCCACCTCAGTCCCTGTGGAGCACTTCTGAAGCCTCCCATTCAGATGCTAAAGACGTTCCCGCTGAGGAAATTGAAAGCGAAGAAGACACTCTTGATGATGGAGATGATGATGATGTGGAGGAAGATCACGAGCAGGGAACAGAGACACAAGTTCATCCAGAAGCAGAGCCTGAGGTGAAAAAGGCTCCTGAAGTTCGTGCTCCTCCTAAGGAGGCAGAGAGGCAACTTTCCAAGAAAGAGAGGAAAAAGAAGGAACTTGCTGAGCTTGAGGCTTTGCTAGCAGATTTTGGAGTTGCAACCAAAGATGAGAATGGTCAACAAGACTCTCAAGATAAGGGGGAGAAGAAAGAAGTGAATGATGAGGGAGAGAAGAAGGAGAACACAACCGGAGAATCAAAGGCCTCAAAGAAGAAGAAAAAGAAGGACAAACAGAAGGAGCTAAAAGAATCCCAGAGTGAAGTGAAGAGCAACTCGGATGCTGCAAGTGAGTCCGCTGAGCAGGAGGAGTCTTCTTCTTCCATCGACGTCAAAGAACGGCTAAAGAAGATTGCATCAATGAAGAAGAAGAAATCAAGCAAGGAGGTTGATGGTGCTTCAACAGCTGCTGCAAAGGAAGCAGCTGCGAGGAAGGCAAAGTTGGCCGCAGCGAAGAAAAAAGAAAAGAAAAACTACAATCAGCAACCTGTGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MAM33

Protein Analysis

315

Amino Acids

34.78

Weight (kDa)

5.26

Isoelectric Point (pI)

48.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012836)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25670 AT2G25670 AT4G32610
fragaria_vesca FvH4_2g30190
malus_domestica MD15G1114900.v1.1
prunus_persica Prupe.1G466300_v2.0.a1 Prupe.1G466300_v2.0.a1
pyrus_communis pycom15g10350
rosa_chinensis RchiOBHm_Chr6g0312721
rosa_multiflora Rmu_ssc0000412.1_g000011
rosa_roxburghii Rroxscaffold_7G00156560
rosa_rugosa Rorug06G0398600 Rorug06G0398800
rosa_samantha Rh6AG516000 Rh6BG527300 Rh6CG532200 Rh6DG518300
rosa_wichuraiana Rw6G044830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 783
AccB1I GGYRCC 1 cut(s) 175
AciI CCGC 3 cut(s) 315, 747, 897
AclWI GGATC 1 cut(s) 40
AcoI YGGCCR 1 cut(s) 894
AcuI CTGAAG 2 cut(s) 303, 465
AcyI GRCGYC 1 cut(s) 780
AgsI TTSAA 2 cut(s) 329, 852
AjuI GAANNNNNNNTTGG 2 cut(s) 875, 907
AluBI AGCT 5 cut(s) 122, 520, 694, 857, 875
AluI AGCT 5 cut(s) 122, 520, 694, 857, 875
Alw21I GWGCWC 2 cut(s) 278, 457
Alw26I GTCTC 1 cut(s) 392
AlwI GGATC 1 cut(s) 40
AlwNI CAGNNNCTG 3 cut(s) 268, 425, 860
AoxI GGCC 2 cut(s) 654, 894
ApeKI GCWGC 7 cut(s) 65, 734, 857, 860, 872, 875, 899
AsuHPI GGTGA 1 cut(s) 442
AsuNHI GCTAGC 1 cut(s) 532
AxyI CCTNAGG 2 cut(s) 426, 462
BaeGI GKGCMC 1 cut(s) 178
BanI GGYRCC 1 cut(s) 175
BauI CACGAG 1 cut(s) 383
BbsI GAAGAC 2 cut(s) 345, 756
Bbv12I GWGCWC 2 cut(s) 278, 457
BbvCI CCTCAGC 1 cut(s) 318
BbvI GCAGC 7 cut(s) 52, 721, 844, 847, 862, 884, 911
BccI CCATC 3 cut(s) 347, 782, 836
BceAI ACGGC 1 cut(s) 806
BciVI GTATCC 1 cut(s) 67
BcoDI GTCTC 1 cut(s) 392
BfaI CTAG 1 cut(s) 533
BfuI GTATCC 1 cut(s) 67
BisI GCNGC 8 cut(s) 66, 735, 858, 861, 873, 876, 897, 900
BlpI GCTNAGC 2 cut(s) 516, 750
BlsI GCNGC 8 cut(s) 67, 736, 859, 862, 874, 877, 898, 901
BmiI GGNNCC 3 cut(s) 153, 177, 441
BmsI GCATC 4 cut(s) 27, 289, 721, 815
BmtI GCTAGC 1 cut(s) 536
BpiI GAAGAC 2 cut(s) 345, 756
Bpu10I CCTNAGC 2 cut(s) 156, 318
Bpu1102I GCTNAGC 2 cut(s) 516, 750
BpuEI CTTGAG 2 cut(s) 542, 567
Bsa29I ATCGAT 2 cut(s) 35, 213
BsaHI GRCGYC 1 cut(s) 780
BsaWI WCCGGW 1 cut(s) 641
BsaXI ACNNNNNCTCC 2 cut(s) 238, 268
Bse21I CCTNAGG 2 cut(s) 426, 462
BseCI ATCGAT 2 cut(s) 35, 213
BseGI GGATG 2 cut(s) 409, 736
BseMII CTCAG 6 cut(s) 147, 275, 309, 417, 507, 741
BseRI GAGGAG 2 cut(s) 447, 773
BseSI GKGCMC 1 cut(s) 178
BseXI GCAGC 7 cut(s) 52, 721, 844, 847, 862, 884, 911
BshFI GGCC 2 cut(s) 656, 896
BshNI GGYRCC 1 cut(s) 175
BshVI ATCGAT 2 cut(s) 35, 213
BsiHKAI GWGCWC 2 cut(s) 278, 457
BsiSI CCGG 1 cut(s) 642
BslFI GGGAC 1 cut(s) 250
BsmAI GTCTC 1 cut(s) 392
BsmFI GGGAC 1 cut(s) 250
BsnI GGCC 2 cut(s) 656, 896
Bsp1286I GDGCHC 3 cut(s) 178, 278, 457
Bsp143I GATC 2 cut(s) 32, 379
Bsp1720I GCTNAGC 2 cut(s) 516, 750
BspACI CCGC 3 cut(s) 315, 747, 897
BspANI GGCC 2 cut(s) 656, 896
BspCNI CTCAG 6 cut(s) 148, 274, 310, 418, 508, 742
BspDI ATCGAT 2 cut(s) 35, 213
BspLI GGNNCC 3 cut(s) 153, 177, 441
BspOI GCTAGC 1 cut(s) 536
BspPI GGATC 1 cut(s) 40
BspQI GCTCTTC 1 cut(s) 713
BspT107I GGYRCC 1 cut(s) 175
BssMI GATC 2 cut(s) 32, 379
BssNI GRCGYC 1 cut(s) 780
BssSI CACGAG 1 cut(s) 383
Bst2BI CACGAG 1 cut(s) 383
Bst6I CTCTTC 1 cut(s) 713
BstACI GRCGYC 1 cut(s) 780
BstC8I GCNNGC 1 cut(s) 534
BstDEI CTNAG 8 cut(s) 129, 156, 261, 318, 426, 462, 516, 750
BstF5I GGATG 2 cut(s) 409, 736
BstKTI GATC 2 cut(s) 35, 382
BstMAI GTCTC 1 cut(s) 392
BstMBI GATC 2 cut(s) 32, 379
BstMWI GCNNNNNNNGC 6 cut(s) 251, 533, 854, 869, 884, 893
BstSLI GKGCMC 1 cut(s) 178
BstV1I GCAGC 7 cut(s) 52, 721, 844, 847, 862, 884, 911
BstV2I GAAGAC 2 cut(s) 345, 756
Bsu15I ATCGAT 2 cut(s) 35, 213
Bsu36I CCTNAGG 2 cut(s) 426, 462
BsuI GTATCC 1 cut(s) 67
BsuRI GGCC 2 cut(s) 656, 896
BsuTUI ATCGAT 2 cut(s) 35, 213
BtgZI GCGATG 1 cut(s) 234
BtsCI GGATG 2 cut(s) 409, 736
BtsI GCAGTG 1 cut(s) 249
BtsIMutI CAGTG 1 cut(s) 249
Cac8I GCNNGC 1 cut(s) 534
CaiI CAGNNNCTG 3 cut(s) 268, 425, 860
ClaI ATCGAT 2 cut(s) 35, 213
DdeI CTNAG 8 cut(s) 129, 156, 261, 318, 426, 462, 516, 750
DpnI GATC 2 cut(s) 34, 381
DpnII GATC 2 cut(s) 32, 379
EaeI YGGCCR 1 cut(s) 894
Eam1104I CTCTTC 1 cut(s) 713
EarI CTCTTC 1 cut(s) 713
Eco147I AGGCCT 1 cut(s) 656
Eco32I GATATC 1 cut(s) 211
Eco57I CTGAAG 2 cut(s) 303, 465
Eco81I CCTNAGG 2 cut(s) 426, 462
EcoRV GATATC 1 cut(s) 211
FalI AAGNNNNNCTT 2 cut(s) 330, 362
FaqI GGGAC 1 cut(s) 250
FauI CCCGC 1 cut(s) 322
Fnu4HI GCNGC 8 cut(s) 66, 735, 858, 861, 873, 876, 897, 900
FokI GGATG 2 cut(s) 396, 743
Fsp4HI GCNGC 8 cut(s) 66, 735, 858, 861, 873, 876, 897, 900
FspBI CTAG 1 cut(s) 533
GluI GCNGC 8 cut(s) 66, 735, 858, 861, 873, 876, 897, 900
HaeIII GGCC 2 cut(s) 656, 896
HapII CCGG 1 cut(s) 642
Hin1I GRCGYC 1 cut(s) 780
HincII GTYRAC 1 cut(s) 572
HindII GTYRAC 1 cut(s) 572
HindIII AAGCTT 1 cut(s) 120
HinfI GANTC 7 cut(s) 43, 140, 578, 647, 701, 743, 761
HpaII CCGG 1 cut(s) 642
HphI GGTGA 1 cut(s) 442
Hpy166II GTNNAC 1 cut(s) 572
Hpy188I TCNGA 5 cut(s) 48, 100, 283, 298, 730
Hpy188III TCNNGA 5 cut(s) 347, 383, 413, 443, 584
Hpy8I GTNNAC 1 cut(s) 572
Hpy99I CGWCG 1 cut(s) 782
HpyAV CCTTC 6 cut(s) 142, 499, 622, 670, 682, 877
HpyCH4IV ACGT 2 cut(s) 309, 780
HpyCH4V TGCA 4 cut(s) 551, 737, 806, 863
HpyF10VI GCNNNNNNNGC 6 cut(s) 251, 533, 854, 869, 884, 893
HpyF3I CTNAG 8 cut(s) 129, 156, 261, 318, 426, 462, 516, 750
HpySE526I ACGT 2 cut(s) 309, 780
Hsp92I GRCGYC 1 cut(s) 780
Kzo9I GATC 2 cut(s) 32, 379
LguI GCTCTTC 1 cut(s) 713
LmnI GCTCC 6 cut(s) 151, 259, 273, 445, 460, 691
Lsp1109I GCAGC 7 cut(s) 52, 721, 844, 847, 862, 884, 911
LweI GCATC 4 cut(s) 27, 289, 721, 815
MaeI CTAG 1 cut(s) 533
MaeII ACGT 2 cut(s) 309, 780
MalI GATC 2 cut(s) 34, 381
MboI GATC 2 cut(s) 32, 379
MhlI GDGCHC 3 cut(s) 178, 278, 457
MluCI AATT 1 cut(s) 324
MlyI GAGTC 3 cut(s) 572, 752, 770
MslI CAYNNNNRTG 1 cut(s) 297
MspA1I CMGCKG 4 cut(s) 317, 749, 857, 875
MspI CCGG 1 cut(s) 642
MwoI GCNNNNNNNGC 6 cut(s) 251, 533, 854, 869, 884, 893
NdeII GATC 2 cut(s) 32, 379
NheI GCTAGC 1 cut(s) 532
NlaIV GGNNCC 3 cut(s) 153, 177, 441
PceI AGGCCT 1 cut(s) 656
PciSI GCTCTTC 1 cut(s) 713
PfeI GAWTC 4 cut(s) 43, 140, 647, 701
PkrI GCNGC 8 cut(s) 67, 736, 859, 862, 874, 877, 898, 901
PleI GAGTC 3 cut(s) 572, 751, 769
PpsI GAGTC 3 cut(s) 572, 751, 769
PspN4I GGNNCC 3 cut(s) 153, 177, 441
PstNI CAGNNNCTG 3 cut(s) 268, 425, 860
PvuII CAGCTG 2 cut(s) 857, 875
RseI CAYNNNNRTG 1 cut(s) 297
SapI GCTCTTC 1 cut(s) 713
SatI GCNGC 8 cut(s) 66, 735, 858, 861, 873, 876, 897, 900
Sau3AI GATC 2 cut(s) 32, 379
SchI GAGTC 3 cut(s) 572, 752, 770
SduI GDGCHC 3 cut(s) 178, 278, 457
SfaNI GCATC 4 cut(s) 27, 289, 721, 815
SmiMI CAYNNNNRTG 1 cut(s) 297
SmlI CTYRAG 2 cut(s) 521, 582
SmoI CTYRAG 2 cut(s) 521, 582
Sse9I AATT 1 cut(s) 324
SseBI AGGCCT 1 cut(s) 656
SsiI CCGC 3 cut(s) 315, 747, 897
SspMI CTAG 1 cut(s) 533
StuI AGGCCT 1 cut(s) 656
TaiI ACGT 2 cut(s) 312, 783
TaqI TCGA 4 cut(s) 35, 80, 213, 777
TasI AATT 1 cut(s) 324
TauI GCSGC 1 cut(s) 899
TfiI GAWTC 4 cut(s) 43, 140, 647, 701
TscAI CASTG 1 cut(s) 256
TseI GCWGC 7 cut(s) 65, 734, 857, 860, 872, 875, 899
TspDTI ATGAA 3 cut(s) 240, 398, 827
TspRI CASTG 1 cut(s) 256
XcmI CCANNNNNNNNNTGG 1 cut(s) 168
XspI CTAG 1 cut(s) 533
ZraI GACGTC 1 cut(s) 781
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.