RchiOBHm_Chr6g0312721

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0012836
Physical Location & Seq
Forward (+)
69296350 .. 69299041
2692 bp
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UTR
Exon/CDS
Intron
PRQ28133

Sequence Viewer

Length: 954 bp
ATGGTAGGCGGTGGAAACAGGAGAGACGAGGGCTCGCTCGTCATCAAGAACACCAACGTTTTCGCGGCGCTCGAGACTCTGAGGAAGAAGAAGAAGTCCGATAAGAAGAGCAGAGGGACCTCCAAGGACCACTCAGGGCAGCCCAAGGCCCCTGAGCCACAGGTGTTCTGGGCGCCTGCTCCCTTGAACGCCAAGTCGTGGGCGGATGTGGATGATGAAGATGATGATGACTATTATGCCACCACCGCCCCGATTCAGCCGGTCTGGGGATCCTCTCAGCCTCAGCCGAGTAAGCACAAGGCTGCCAATGTAGAGGAAAGTGAGAGTGAAGAAGATATTCTTGATGAAGGTGATGAAGATGAGGAAGAGCATGATCATGAACCAGAGGCTCCAGTTCAGCCTGAGCCAGTGGTGAAGAAGCCTGCTGAGGTTCCTGCCCCACCTAAGGAGGCAGAAAAGCAACTTTCAAAGAAGGAGAGAAAGAAAAAGGAACTGGCAGAACTTGAAGCTCTTCTAGCTGATTTTGGAGTTACCCAGAAGGAGAGTGACAGTCAAGATGAATCACGTGGTGTTGCCCAAGACAAGGATAGTGTACCAAATGGAGATGCAGAAAGGAAGGAAAATCATCCTGCAGAGTCCAAAAGCTCCAAGAAGAAGAAAAAGAAGGATAAAGCTTCTAAGGATGCAAAAGAATCACAGGATCAACCAAACAACTCAGGGGTCACTAATGGACCAAGTGAAGCTGCAGGAACTGAACAGACGGAGGAGGACACATCAACTATTGATGTGAAAGAGAGACTAAAGAAGGTGGCAACTGCCAAGAAGAAGAAATCTACCAAAGAGTTGGATGCGGCTGCAAAAGCTGCTGCTCAAGAGGCTGCTGCCAGGAGAGCAAAACTTGCTGCAGCCAAGAAGAAAGAGAAGAACCATTATAACCAGCAGCCTCTGCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

317

Amino Acids

34.76

Weight (kDa)

5.76

Isoelectric Point (pI)

52.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012836)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25670 AT2G25670 AT4G32610
fragaria_vesca FvH4_2g30190
malus_domestica MD15G1114900.v1.1
prunus_persica Prupe.1G466300_v2.0.a1 Prupe.1G466300_v2.0.a1
pyrus_communis pycom15g10350
rosa_chinensis RchiOBHm_Chr6g0312721
rosa_multiflora Rmu_ssc0000412.1_g000011
rosa_roxburghii Rroxscaffold_7G00156560
rosa_rugosa Rorug06G0398600 Rorug06G0398800
rosa_samantha Rh6AG516000 Rh6BG527300 Rh6CG532200 Rh6DG518300
rosa_wichuraiana Rw6G044830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 933
AccB1I GGYRCC 1 cut(s) 172
AccB7I CCANNNNNTGG 1 cut(s) 198
AccII CGCG 1 cut(s) 65
AciI CCGC 6 cut(s) 9, 65, 203, 246, 851, 949
AclI AACGTT 1 cut(s) 57
AclWI GGATC 3 cut(s) 264, 277, 708
AcvI CACGTG 1 cut(s) 566
AcyI GRCGYC 1 cut(s) 173
AdeI CACNNNGTG 1 cut(s) 569
AfaI GTAC 1 cut(s) 594
AfiI CCNNNNNNNGG 4 cut(s) 198, 266, 445, 583
AgsI TTSAA 3 cut(s) 187, 468, 506
AjnI CCWGG 1 cut(s) 884
AluBI AGCT 6 cut(s) 509, 518, 645, 674, 743, 863
AluI AGCT 6 cut(s) 509, 518, 645, 674, 743, 863
Alw26I GTCTC 3 cut(s) 18, 68, 790
AlwI GGATC 3 cut(s) 264, 277, 708
AlwNI CAGNNNCTG 2 cut(s) 752, 946
Ama87I CYCGRG 1 cut(s) 71
AoxI GGCC 1 cut(s) 147
Asp700I GAANNNNTTC 2 cut(s) 336, 510
AspLEI GCGC 2 cut(s) 70, 175
AspS9I GGNCC 4 cut(s) 117, 127, 148, 731
AsuHPI GGTGA 2 cut(s) 362, 424
AvaI CYCGRG 1 cut(s) 71
AvaII GGWCC 3 cut(s) 117, 127, 731
AxyI CCTNAGG 1 cut(s) 444
BamHI GGATCC 1 cut(s) 269
BanI GGYRCC 1 cut(s) 172
BanII GRGCYC 1 cut(s) 35
BbrPI CACGTG 1 cut(s) 566
BbvCI CCTCAGC 2 cut(s) 282, 426
BciT130I CCWGG 1 cut(s) 886
BclI TGATCA 1 cut(s) 373
BcoDI GTCTC 3 cut(s) 18, 68, 790
BfaI CTAG 1 cut(s) 515
BfmI CTRYAG 3 cut(s) 630, 744, 903
BfoI RGCGCY 2 cut(s) 71, 176
Bme1390I CCNGG 1 cut(s) 886
Bme18I GGWCC 3 cut(s) 117, 127, 731
BmeT110I CYCGRG 1 cut(s) 71
BmgT120I GGNCC 4 cut(s) 117, 127, 148, 731
BmiI GGNNCC 6 cut(s) 118, 150, 174, 271, 390, 432
BmrFI CCNGG 1 cut(s) 886
BmsI GCATC 3 cut(s) 595, 673, 838
BpmI CTGGAG 1 cut(s) 375
Bpu10I CCTNAGC 4 cut(s) 153, 282, 402, 426
BpuEI CTTGAG 1 cut(s) 855
BsaAI YACGTR 1 cut(s) 566
BsaHI GRCGYC 1 cut(s) 173
BsaJI CCNNGG 2 cut(s) 123, 144
Bsc4I CCNNNNNNNGG 4 cut(s) 198, 266, 445, 583
Bse118I RCCGGY 1 cut(s) 259
Bse1I ACTGG 3 cut(s) 392, 407, 498
Bse21I CCTNAGG 1 cut(s) 444
BseBI CCWGG 1 cut(s) 886
BseDI CCNNGG 2 cut(s) 123, 144
BseGI GGATG 5 cut(s) 211, 217, 625, 688, 853
BseLI CCNNNNNNNGG 4 cut(s) 198, 266, 445, 583
BseMII CTCAG 8 cut(s) 71, 144, 147, 290, 296, 393, 417, 729
BseNI ACTGG 3 cut(s) 392, 407, 498
BseRI GAGGAG 1 cut(s) 779
Bsh1236I CGCG 1 cut(s) 65
BshFI GGCC 1 cut(s) 149
BshNI GGYRCC 1 cut(s) 172
BsiHKCI CYCGRG 1 cut(s) 71
BsiSI CCGG 1 cut(s) 260
BslFI GGGAC 1 cut(s) 130
BslI CCNNNNNNNGG 4 cut(s) 198, 266, 445, 583
BsmAI GTCTC 3 cut(s) 18, 68, 790
BsmBI CGTCTC 1 cut(s) 18
BsmFI GGGAC 1 cut(s) 130
BsnI GGCC 1 cut(s) 149
BsoBI CYCGRG 1 cut(s) 71
Bsp1286I GDGCHC 1 cut(s) 35
Bsp143I GATC 3 cut(s) 269, 373, 700
BspACI CCGC 6 cut(s) 9, 65, 203, 246, 851, 949
BspANI GGCC 1 cut(s) 149
BspCNI CTCAG 8 cut(s) 72, 145, 146, 289, 295, 394, 418, 728
BspFNI CGCG 1 cut(s) 65
BspHI TCATGA 1 cut(s) 376
BspLI GGNNCC 6 cut(s) 118, 150, 174, 271, 390, 432
BspMAI CTGCAG 3 cut(s) 634, 748, 907
BspPI GGATC 3 cut(s) 264, 277, 708
BspQI GCTCTTC 3 cut(s) 101, 360, 516
BspT107I GGYRCC 1 cut(s) 172
BsrFI RCCGGY 1 cut(s) 259
BsrI ACTGG 3 cut(s) 392, 407, 498
BssAI RCCGGY 1 cut(s) 259
BssECI CCNNGG 2 cut(s) 123, 144
BssMI GATC 3 cut(s) 269, 373, 700
BssNI GRCGYC 1 cut(s) 173
BssT1I CCWWGG 2 cut(s) 123, 144
Bst2UI CCWGG 1 cut(s) 886
Bst4CI ACNGT 1 cut(s) 551
Bst6I CTCTTC 3 cut(s) 101, 360, 516
BstACI GRCGYC 1 cut(s) 173
BstAPI GCANNNNNTGC 3 cut(s) 863, 899, 946
BstBAI YACGTR 1 cut(s) 566
BstC8I GCNNGC 3 cut(s) 35, 177, 423
BstF5I GGATG 5 cut(s) 211, 217, 625, 688, 853
BstFNI CGCG 1 cut(s) 65
BstH2I RGCGCY 2 cut(s) 71, 176
BstHHI GCGC 2 cut(s) 70, 175
BstKTI GATC 3 cut(s) 272, 376, 703
BstMAI GTCTC 3 cut(s) 18, 68, 790
BstMBI GATC 3 cut(s) 269, 373, 700
BstMWI GCNNNNNNNGC 9 cut(s) 245, 292, 515, 860, 863, 875, 890, 899, 946
BstNI CCWGG 1 cut(s) 886
BstSCI CCNGG 1 cut(s) 884
BstSFI CTRYAG 3 cut(s) 630, 744, 903
BstUI CGCG 1 cut(s) 65
BstX2I RGATCY 1 cut(s) 269
BstXI CCANNNNNNTGG 1 cut(s) 844
BstYI RGATCY 1 cut(s) 269
Bsu36I CCTNAGG 1 cut(s) 444
BsuRI GGCC 1 cut(s) 149
BtsCI GGATG 5 cut(s) 211, 217, 625, 688, 853
BtsIMutI CAGTG 1 cut(s) 414
Cac8I GCNNGC 3 cut(s) 35, 177, 423
CaiI CAGNNNCTG 2 cut(s) 752, 946
CciI TCATGA 1 cut(s) 376
CfoI GCGC 2 cut(s) 70, 175
Cfr10I RCCGGY 1 cut(s) 259
Cfr13I GGNCC 4 cut(s) 117, 127, 148, 731
Csp6I GTAC 1 cut(s) 593
CviAII CATG 2 cut(s) 371, 377
CviQI GTAC 1 cut(s) 593
DinI GGCGCC 1 cut(s) 174
DpnI GATC 3 cut(s) 271, 375, 702
DpnII GATC 3 cut(s) 269, 373, 700
DraIII CACNNNGTG 1 cut(s) 569
Eam1104I CTCTTC 3 cut(s) 101, 360, 516
EarI CTCTTC 3 cut(s) 101, 360, 516
EciI GGCGGA 1 cut(s) 218
Eco130I CCWWGG 2 cut(s) 123, 144
Eco24I GRGCYC 1 cut(s) 35
Eco47I GGWCC 3 cut(s) 117, 127, 731
Eco72I CACGTG 1 cut(s) 566
Eco81I CCTNAGG 1 cut(s) 444
Eco88I CYCGRG 1 cut(s) 71
EcoO109I RGGNCCY 2 cut(s) 117, 148
EcoRII CCWGG 1 cut(s) 884
EcoT14I CCWWGG 2 cut(s) 123, 144
EcoT38I GRGCYC 1 cut(s) 35
EgeI GGCGCC 1 cut(s) 174
EheI GGCGCC 1 cut(s) 174
ErhI CCWWGG 2 cut(s) 123, 144
Esp3I CGTCTC 1 cut(s) 18
FaeI CATG 2 cut(s) 374, 380
FaiI YATR 4 cut(s) 237, 372, 378, 933
FalI AAGNNNNNCTT 2 cut(s) 324, 356
FaqI GGGAC 1 cut(s) 130
FatI CATG 2 cut(s) 370, 376
FbaI TGATCA 1 cut(s) 373
FokI GGATG 5 cut(s) 218, 224, 612, 695, 860
FriOI GRGCYC 1 cut(s) 35
FspBI CTAG 1 cut(s) 515
GlaI GCGC 2 cut(s) 69, 174
GsuI CTGGAG 1 cut(s) 375
HaeII RGCGCY 2 cut(s) 71, 176
HaeIII GGCC 1 cut(s) 149
HapII CCGG 1 cut(s) 260
HhaI GCGC 2 cut(s) 70, 175
Hin1I GRCGYC 1 cut(s) 173
Hin1II CATG 2 cut(s) 374, 380
Hin6I GCGC 2 cut(s) 68, 173
HinP1I GCGC 2 cut(s) 68, 173
HindIII AAGCTT 1 cut(s) 672
HinfI GANTC 5 cut(s) 76, 253, 560, 635, 692
HpaII CCGG 1 cut(s) 260
HphI GGTGA 2 cut(s) 362, 424
Hpy166II GTNNAC 1 cut(s) 593
Hpy188I TCNGA 2 cut(s) 81, 100
Hpy188III TCNNGA 6 cut(s) 46, 73, 341, 377, 554, 872
Hpy8I GTNNAC 1 cut(s) 593
HpyAV CCTTC 6 cut(s) 341, 466, 532, 610, 658, 799
HpyCH4III ACNGT 1 cut(s) 551
HpyCH4IV ACGT 2 cut(s) 57, 565
HpyCH4V TGCA 6 cut(s) 608, 632, 686, 746, 857, 905
HpyF10VI GCNNNNNNNGC 9 cut(s) 245, 292, 515, 860, 863, 875, 890, 899, 946
HpySE526I ACGT 2 cut(s) 57, 565
Hsp92I GRCGYC 1 cut(s) 173
Hsp92II CATG 2 cut(s) 374, 380
HspAI GCGC 2 cut(s) 68, 173
KasI GGCGCC 1 cut(s) 172
Ksp22I TGATCA 1 cut(s) 373
Kzo9I GATC 3 cut(s) 269, 373, 700
LguI GCTCTTC 3 cut(s) 101, 360, 516
LmnI GCTCC 3 cut(s) 184, 394, 650
LweI GCATC 3 cut(s) 595, 673, 838
MaeI CTAG 1 cut(s) 515
MaeII ACGT 2 cut(s) 57, 565
MaeIII GTNAC 3 cut(s) 529, 545, 721
MalI GATC 3 cut(s) 271, 375, 702
MboI GATC 3 cut(s) 269, 373, 700
MflI RGATCY 1 cut(s) 269
MhlI GDGCHC 1 cut(s) 35
Mly113I GGCGCC 1 cut(s) 173
MlyI GAGTC 2 cut(s) 70, 644
MmeI TCCRAC 1 cut(s) 825
MroXI GAANNNNTTC 2 cut(s) 336, 510
MslI CAYNNNNRTG 1 cut(s) 375
MspI CCGG 1 cut(s) 260
MspR9I CCNGG 1 cut(s) 886
MvaI CCWGG 1 cut(s) 886
MvnI CGCG 1 cut(s) 65
MwoI GCNNNNNNNGC 9 cut(s) 245, 292, 515, 860, 863, 875, 890, 899, 946
NarI GGCGCC 1 cut(s) 173
NdeII GATC 3 cut(s) 269, 373, 700
NlaIII CATG 2 cut(s) 374, 380
NlaIV GGNNCC 6 cut(s) 118, 150, 174, 271, 390, 432
NmeAIII GCCGAG 1 cut(s) 312
NmuCI GTSAC 2 cut(s) 545, 721
PaeR7I CTCGAG 1 cut(s) 71
PagI TCATGA 1 cut(s) 376
PciSI GCTCTTC 3 cut(s) 101, 360, 516
PcsI WCGNNNNNNNCGW 1 cut(s) 69
PdmI GAANNNNTTC 2 cut(s) 336, 510
PfeI GAWTC 3 cut(s) 253, 560, 692
PflMI CCANNNNNTGG 1 cut(s) 198
PleI GAGTC 2 cut(s) 70, 643
PluTI GGCGCC 1 cut(s) 176
PmaCI CACGTG 1 cut(s) 566
PmlI CACGTG 1 cut(s) 566
PpsI GAGTC 2 cut(s) 70, 643
Ppu21I YACGTR 1 cut(s) 566
PpuMI RGGWCCY 1 cut(s) 117
PsiI TTATAA 1 cut(s) 933
Psp1406I AACGTT 1 cut(s) 57
Psp5II RGGWCCY 1 cut(s) 117
Psp6I CCWGG 1 cut(s) 884
PspCI CACGTG 1 cut(s) 566
PspGI CCWGG 1 cut(s) 884
PspN4I GGNNCC 6 cut(s) 118, 150, 174, 271, 390, 432
PspPI GGNCC 4 cut(s) 117, 127, 148, 731
PspPPI RGGWCCY 1 cut(s) 117
PstI CTGCAG 3 cut(s) 634, 748, 907
PstNI CAGNNNCTG 2 cut(s) 752, 946
PsuI RGATCY 1 cut(s) 269
RsaI GTAC 1 cut(s) 594
RsaNI GTAC 1 cut(s) 593
RseI CAYNNNNRTG 1 cut(s) 375
SapI GCTCTTC 3 cut(s) 101, 360, 516
Sau3AI GATC 3 cut(s) 269, 373, 700
Sau96I GGNCC 4 cut(s) 117, 127, 148, 731
SchI GAGTC 2 cut(s) 70, 644
ScrFI CCNGG 1 cut(s) 886
SduI GDGCHC 1 cut(s) 35
SfaNI GCATC 3 cut(s) 595, 673, 838
SfcI CTRYAG 3 cut(s) 630, 744, 903
SfoI GGCGCC 1 cut(s) 174
Sfr274I CTCGAG 1 cut(s) 71
SinI GGWCC 3 cut(s) 117, 127, 731
SlaI CTCGAG 1 cut(s) 71
SmiMI CAYNNNNRTG 1 cut(s) 375
SmlI CTYRAG 2 cut(s) 71, 870
SmoI CTYRAG 2 cut(s) 71, 870
SsiI CCGC 6 cut(s) 9, 65, 203, 246, 851, 949
SspDI GGCGCC 1 cut(s) 172
SspMI CTAG 1 cut(s) 515
StyD4I CCNGG 1 cut(s) 884
StyI CCWWGG 2 cut(s) 123, 144
TaaI ACNGT 1 cut(s) 551
TaiI ACGT 2 cut(s) 60, 568
TaqI TCGA 1 cut(s) 72
TauI GCSGC 2 cut(s) 68, 854
TfiI GAWTC 3 cut(s) 253, 560, 692
TscAI CASTG 1 cut(s) 414
TseFI GTSAC 2 cut(s) 545, 721
Tsp45I GTSAC 2 cut(s) 545, 721
TspDTI ATGAA 5 cut(s) 231, 360, 369, 393, 573
TspGWI ACGGA 1 cut(s) 776
TspRI CASTG 1 cut(s) 414
Van91I CCANNNNNTGG 1 cut(s) 198
VpaK11BI GGWCC 3 cut(s) 117, 127, 731
XcmI CCANNNNNNNNNTGG 1 cut(s) 165
XhoI CTCGAG 1 cut(s) 71
XmnI GAANNNNTTC 2 cut(s) 336, 510
XspI CTAG 1 cut(s) 515
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.