Prupe.1G466300_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0012836
Physical Location & Seq
Forward (+)
38887186 .. 38890519
3334 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G466300.1

Sequence Viewer

Length: 963 bp
ATGGTTGGCGGTGGAAGCAGGAGAGACGAGGGCTCGCTCGTCATCAACAACACCAACGTGTTCGCGGCGCTCGAGACTCTGAGGAAGAAGAAGAAGTCCGATAAGGATCGCAAGAGCAAAGGGTCCTCCAAGTCGGCCCAGTCGGCCCAGCCCAAGGCGCCCGAGGCCCAGGTTTTTTGGGCTCCGGCTCCCTTGAACGCGAAATCGTGGGCCGATGTGGATGACGAAGATGATGATGACTATTACGCCACAACGGCTCCGCCTCAATCCGTTTGGGGACCTTCGGAGCCCCACCAGAATAAGGACAGGCCAAATGTAGAGGATAGTGAGAGTGAAGAAGATATTCTTGATGAAGGTGATGATGATGTAGAGGAAGAGCATGATAATGAACCAGAGGTGCCAGTAAACCCTGAGCCAGTGCTGAAGAAGCCTGCTGATGTTCCTGCGCCACCTAAGGAGGCAGAAAGGCAACTTTCAAAAAAGGAAAAAAAGAAAAAGGAACTTGCAGAACTTGAGGCCCTTCTGGCTGATTTTGGAGTTACTCAAAAGGAGAGTGATAGTCAAGATGAATCACGTGGTGCTGCACAAGAGAAGGATAGTGCGCTGAATGGAGATGGAGAAAAGAAGGAAAATCAGCCCGCAGAGTCCAAGAGCGCCAAGAAGAAGAAAAAGAAAGATAAAGCTTCCAAGGAGGTGAAAGAATCTCAAGACCAACCAAACAACTCAGGGGCAACTAATGGACTGGGTGAAGTTACTGCAGCTGAACAGACAGAGGAGGATACATCAAATGTTGATGTGAAGGAGCGATTAAAGAAGGTTGTAACCGCGAAGAAGAAGAAGTCTAGTAAAGAGATGGATGCTGCTGCGAAAGCAGCTGCTCAAGAGGCTGCTGCTAGGAGAGCACGGCTTGCTGCAGCTAAGAAGAAAGAGAAGAACCATTACAACCAGCAGCCCGTGCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

321

Amino Acids

35.04

Weight (kDa)

5.35

Isoelectric Point (pI)

48.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012836)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25670 AT2G25670 AT4G32610
fragaria_vesca FvH4_2g30190
malus_domestica MD15G1114900.v1.1
prunus_persica Prupe.1G466300_v2.0.a1 Prupe.1G466300_v2.0.a1
pyrus_communis pycom15g10350
rosa_chinensis RchiOBHm_Chr6g0312721
rosa_multiflora Rmu_ssc0000412.1_g000011
rosa_roxburghii Rroxscaffold_7G00156560
rosa_rugosa Rorug06G0398600 Rorug06G0398800
rosa_samantha Rh6AG516000 Rh6BG527300 Rh6CG532200 Rh6DG518300
rosa_wichuraiana Rw6G044830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 157, 397
AccII CGCG 3 cut(s) 65, 200, 827
AciI CCGC 6 cut(s) 9, 65, 260, 639, 825, 958
AclWI GGATC 1 cut(s) 114
AcuI CTGAAG 1 cut(s) 443
AcvI CACGTG 1 cut(s) 575
AcyI GRCGYC 1 cut(s) 158
AdeI CACNNNGTG 1 cut(s) 578
AfiI CCNNNNNNNGG 2 cut(s) 154, 301
AflIII ACRYGT 1 cut(s) 57
AgsI TTSAA 2 cut(s) 196, 477
AjnI CCWGG 1 cut(s) 168
AleI CACNNNNGTG 1 cut(s) 56
AluBI AGCT 4 cut(s) 683, 761, 875, 917
AluI AGCT 4 cut(s) 683, 761, 875, 917
Alw21I GWGCWC 1 cut(s) 904
Alw26I GTCTC 2 cut(s) 18, 68
AlwI GGATC 1 cut(s) 114
Ama87I CYCGRG 2 cut(s) 71, 161
AoxI GGCC 6 cut(s) 135, 144, 165, 210, 308, 516
Asp700I GAANNNNTTC 1 cut(s) 342
AspLEI GCGC 5 cut(s) 70, 160, 448, 604, 656
AspS9I GGNCC 7 cut(s) 123, 136, 145, 166, 210, 278, 517
AsuHPI GGTGA 3 cut(s) 368, 706, 758
AvaI CYCGRG 2 cut(s) 71, 161
AvaII GGWCC 2 cut(s) 123, 278
AxyI CCTNAGG 1 cut(s) 453
BanI GGYRCC 2 cut(s) 157, 397
BanII GRGCYC 3 cut(s) 35, 184, 291
BarI GAAGNNNNNNTAC 2 cut(s) 923, 955
BbrPI CACGTG 1 cut(s) 575
Bbv12I GWGCWC 1 cut(s) 904
BccI CCATC 2 cut(s) 608, 847
BceAI ACGGC 2 cut(s) 270, 920
BciT130I CCWGG 1 cut(s) 170
BciVI GTATCC 1 cut(s) 772
BcoDI GTCTC 2 cut(s) 18, 68
BfaI CTAG 2 cut(s) 843, 894
BfmI CTRYAG 2 cut(s) 756, 912
BfoI RGCGCY 3 cut(s) 71, 161, 657
BfuI GTATCC 1 cut(s) 772
BglI GCCNNNNNGGC 3 cut(s) 143, 254, 524
Bme1390I CCNGG 1 cut(s) 170
Bme18I GGWCC 2 cut(s) 123, 278
BmeT110I CYCGRG 2 cut(s) 71, 161
BmgT120I GGNCC 7 cut(s) 123, 136, 145, 166, 210, 278, 517
BmiI GGNNCC 8 cut(s) 124, 159, 183, 189, 258, 279, 288, 399
BmrFI CCNGG 1 cut(s) 170
BmrI ACTGGG 2 cut(s) 133, 752
BmsI GCATC 1 cut(s) 847
BmuI ACTGGG 2 cut(s) 133, 752
Bpu10I CCTNAGC 1 cut(s) 411
BpuEI CTTGAG 3 cut(s) 533, 690, 864
BsaAI YACGTR 1 cut(s) 575
BsaBI GATNNNNATC 1 cut(s) 105
BsaHI GRCGYC 1 cut(s) 158
BsaJI CCNNGG 4 cut(s) 153, 162, 168, 687
BsaXI ACNNNNNCTCC 2 cut(s) 241, 271
Bsc4I CCNNNNNNNGG 2 cut(s) 154, 301
Bse1I ACTGG 4 cut(s) 139, 401, 416, 747
Bse21I CCTNAGG 1 cut(s) 453
Bse8I GATNNNNATC 1 cut(s) 105
BseBI CCWGG 1 cut(s) 170
BseDI CCNNGG 4 cut(s) 153, 162, 168, 687
BseGI GGATG 2 cut(s) 226, 862
BseJI GATNNNNATC 1 cut(s) 105
BseLI CCNNNNNNNGG 2 cut(s) 154, 301
BseMII CTCAG 3 cut(s) 71, 402, 738
BseNI ACTGG 4 cut(s) 139, 401, 416, 747
BseRI GAGGAG 1 cut(s) 788
BseYI CCCAGC 1 cut(s) 147
BsgI GTGCAG 1 cut(s) 567
Bsh1236I CGCG 3 cut(s) 65, 200, 827
BshFI GGCC 6 cut(s) 137, 146, 167, 212, 310, 518
BshNI GGYRCC 2 cut(s) 157, 397
BsiHKAI GWGCWC 1 cut(s) 904
BsiHKCI CYCGRG 2 cut(s) 71, 161
BsiSI CCGG 1 cut(s) 185
BslFI GGGAC 1 cut(s) 291
BslI CCNNNNNNNGG 2 cut(s) 154, 301
BsmAI GTCTC 2 cut(s) 18, 68
BsmBI CGTCTC 1 cut(s) 18
BsmFI GGGAC 1 cut(s) 291
BsnI GGCC 6 cut(s) 137, 146, 167, 212, 310, 518
BsoBI CYCGRG 2 cut(s) 71, 161
Bsp1286I GDGCHC 4 cut(s) 35, 184, 291, 904
Bsp143I GATC 1 cut(s) 106
BspACI CCGC 6 cut(s) 9, 65, 260, 639, 825, 958
BspANI GGCC 6 cut(s) 137, 146, 167, 212, 310, 518
BspCNI CTCAG 3 cut(s) 72, 403, 737
BspFNI CGCG 3 cut(s) 65, 200, 827
BspLI GGNNCC 8 cut(s) 124, 159, 183, 189, 258, 279, 288, 399
BspMAI CTGCAG 2 cut(s) 760, 916
BspPI GGATC 1 cut(s) 114
BspQI GCTCTTC 1 cut(s) 369
BspT107I GGYRCC 2 cut(s) 157, 397
BsrI ACTGG 4 cut(s) 139, 401, 416, 747
BssECI CCNNGG 4 cut(s) 153, 162, 168, 687
BssMI GATC 1 cut(s) 106
BssNI GRCGYC 1 cut(s) 158
BssT1I CCWWGG 2 cut(s) 153, 687
Bst2UI CCWGG 1 cut(s) 170
Bst6I CTCTTC 1 cut(s) 369
BstACI GRCGYC 1 cut(s) 158
BstAPI GCANNNNNTGC 2 cut(s) 908, 955
BstBAI YACGTR 1 cut(s) 575
BstC8I GCNNGC 4 cut(s) 35, 432, 639, 909
BstDEI CTNAG 5 cut(s) 80, 411, 453, 724, 918
BstF5I GGATG 2 cut(s) 226, 862
BstFNI CGCG 3 cut(s) 65, 200, 827
BstH2I RGCGCY 3 cut(s) 71, 161, 657
BstHHI GCGC 5 cut(s) 70, 160, 448, 604, 656
BstKTI GATC 1 cut(s) 109
BstMAI GTCTC 2 cut(s) 18, 68
BstMBI GATC 1 cut(s) 106
BstNI CCWGG 1 cut(s) 170
BstSCI CCNGG 1 cut(s) 168
BstSFI CTRYAG 2 cut(s) 756, 912
BstUI CGCG 3 cut(s) 65, 200, 827
Bsu36I CCTNAGG 1 cut(s) 453
BsuI GTATCC 1 cut(s) 772
BsuRI GGCC 6 cut(s) 137, 146, 167, 212, 310, 518
BtsCI GGATG 2 cut(s) 226, 862
BtsIMutI CAGTG 1 cut(s) 423
Cac8I GCNNGC 4 cut(s) 35, 432, 639, 909
CfoI GCGC 5 cut(s) 70, 160, 448, 604, 656
Cfr13I GGNCC 7 cut(s) 123, 136, 145, 166, 210, 278, 517
CviAII CATG 1 cut(s) 380
DdeI CTNAG 5 cut(s) 80, 411, 453, 724, 918
DinI GGCGCC 1 cut(s) 159
DpnI GATC 1 cut(s) 108
DpnII GATC 1 cut(s) 106
DraIII CACNNNGTG 1 cut(s) 578
Eam1104I CTCTTC 1 cut(s) 369
EarI CTCTTC 1 cut(s) 369
EciI GGCGGA 1 cut(s) 249
Eco130I CCWWGG 2 cut(s) 153, 687
Eco24I GRGCYC 3 cut(s) 35, 184, 291
Eco47I GGWCC 2 cut(s) 123, 278
Eco57I CTGAAG 1 cut(s) 443
Eco72I CACGTG 1 cut(s) 575
Eco81I CCTNAGG 1 cut(s) 453
Eco88I CYCGRG 2 cut(s) 71, 161
EcoO109I RGGNCCY 3 cut(s) 123, 278, 517
EcoRII CCWGG 1 cut(s) 168
EcoT14I CCWWGG 2 cut(s) 153, 687
EcoT38I GRGCYC 3 cut(s) 35, 184, 291
EgeI GGCGCC 1 cut(s) 159
EheI GGCGCC 1 cut(s) 159
ErhI CCWWGG 2 cut(s) 153, 687
Esp3I CGTCTC 1 cut(s) 18
FaeI CATG 1 cut(s) 383
FaiI YATR 1 cut(s) 381
FalI AAGNNNNNCTT 2 cut(s) 330, 362
FaqI GGGAC 1 cut(s) 291
FatI CATG 1 cut(s) 379
FauI CCCGC 1 cut(s) 646
FokI GGATG 2 cut(s) 233, 869
FriOI GRGCYC 3 cut(s) 35, 184, 291
FspBI CTAG 2 cut(s) 843, 894
GlaI GCGC 5 cut(s) 69, 159, 447, 603, 655
GsaI CCCAGC 1 cut(s) 151
HaeII RGCGCY 3 cut(s) 71, 161, 657
HaeIII GGCC 6 cut(s) 137, 146, 167, 212, 310, 518
HapII CCGG 1 cut(s) 185
HhaI GCGC 5 cut(s) 70, 160, 448, 604, 656
Hin1I GRCGYC 1 cut(s) 158
Hin1II CATG 1 cut(s) 383
Hin6I GCGC 5 cut(s) 68, 158, 446, 602, 654
HinP1I GCGC 5 cut(s) 68, 158, 446, 602, 654
HindIII AAGCTT 1 cut(s) 681
HinfI GANTC 4 cut(s) 76, 569, 644, 701
HpaII CCGG 1 cut(s) 185
HphI GGTGA 3 cut(s) 368, 706, 758
Hpy166II GTNNAC 1 cut(s) 406
Hpy188I TCNGA 3 cut(s) 81, 100, 286
Hpy188III TCNNGA 5 cut(s) 73, 347, 563, 707, 881
Hpy8I GTNNAC 1 cut(s) 406
HpyAV CCTTC 7 cut(s) 291, 347, 530, 586, 619, 793, 808
HpyCH4IV ACGT 2 cut(s) 57, 574
HpyCH4V TGCA 4 cut(s) 506, 584, 758, 914
HpyF3I CTNAG 5 cut(s) 80, 411, 453, 724, 918
HpySE526I ACGT 2 cut(s) 57, 574
Hsp92I GRCGYC 1 cut(s) 158
Hsp92II CATG 1 cut(s) 383
HspAI GCGC 5 cut(s) 68, 158, 446, 602, 654
KasI GGCGCC 1 cut(s) 157
Kzo9I GATC 1 cut(s) 106
LguI GCTCTTC 1 cut(s) 369
LmnI GCTCC 5 cut(s) 187, 193, 262, 286, 802
LweI GCATC 1 cut(s) 847
MaeI CTAG 2 cut(s) 843, 894
MaeII ACGT 2 cut(s) 57, 574
MaeIII GTNAC 3 cut(s) 538, 751, 820
MalI GATC 1 cut(s) 108
MboI GATC 1 cut(s) 106
MhlI GDGCHC 4 cut(s) 35, 184, 291, 904
Mly113I GGCGCC 1 cut(s) 158
MlyI GAGTC 2 cut(s) 70, 653
MroXI GAANNNNTTC 1 cut(s) 342
MseI TTAA 1 cut(s) 809
MslI CAYNNNNRTG 2 cut(s) 56, 384
MspA1I CMGCKG 2 cut(s) 761, 875
MspI CCGG 1 cut(s) 185
MspR9I CCNGG 1 cut(s) 170
MvaI CCWGG 1 cut(s) 170
MvnI CGCG 3 cut(s) 65, 200, 827
NarI GGCGCC 1 cut(s) 158
NdeII GATC 1 cut(s) 106
NlaIII CATG 1 cut(s) 383
NlaIV GGNNCC 8 cut(s) 124, 159, 183, 189, 258, 279, 288, 399
OliI CACNNNNGTG 1 cut(s) 56
PaeR7I CTCGAG 1 cut(s) 71
PciSI GCTCTTC 1 cut(s) 369
PcsI WCGNNNNNNNCGW 1 cut(s) 69
PdmI GAANNNNTTC 1 cut(s) 342
PfeI GAWTC 2 cut(s) 569, 701
PleI GAGTC 2 cut(s) 70, 652
PluTI GGCGCC 1 cut(s) 161
PmaCI CACGTG 1 cut(s) 575
PmlI CACGTG 1 cut(s) 575
PpsI GAGTC 2 cut(s) 70, 652
Ppu21I YACGTR 1 cut(s) 575
PpuMI RGGWCCY 2 cut(s) 123, 278
Psp5II RGGWCCY 2 cut(s) 123, 278
Psp6I CCWGG 1 cut(s) 168
PspCI CACGTG 1 cut(s) 575
PspFI CCCAGC 1 cut(s) 147
PspGI CCWGG 1 cut(s) 168
PspN4I GGNNCC 8 cut(s) 124, 159, 183, 189, 258, 279, 288, 399
PspPI GGNCC 7 cut(s) 123, 136, 145, 166, 210, 278, 517
PspPPI RGGWCCY 2 cut(s) 123, 278
PstI CTGCAG 2 cut(s) 760, 916
PvuII CAGCTG 2 cut(s) 761, 875
RseI CAYNNNNRTG 2 cut(s) 56, 384
SapI GCTCTTC 1 cut(s) 369
SaqAI TTAA 1 cut(s) 809
Sau3AI GATC 1 cut(s) 106
Sau96I GGNCC 7 cut(s) 123, 136, 145, 166, 210, 278, 517
SchI GAGTC 2 cut(s) 70, 653
ScrFI CCNGG 1 cut(s) 170
SduI GDGCHC 4 cut(s) 35, 184, 291, 904
SfaNI GCATC 1 cut(s) 847
SfcI CTRYAG 2 cut(s) 756, 912
SfiI GGCCNNNNNGGCC 1 cut(s) 143
SfoI GGCGCC 1 cut(s) 159
Sfr274I CTCGAG 1 cut(s) 71
SinI GGWCC 2 cut(s) 123, 278
SlaI CTCGAG 1 cut(s) 71
SmiMI CAYNNNNRTG 2 cut(s) 56, 384
SmlI CTYRAG 4 cut(s) 71, 512, 705, 879
SmoI CTYRAG 4 cut(s) 71, 512, 705, 879
SsiI CCGC 6 cut(s) 9, 65, 260, 639, 825, 958
SspDI GGCGCC 1 cut(s) 157
SspMI CTAG 2 cut(s) 843, 894
StyD4I CCNGG 1 cut(s) 168
StyI CCWWGG 2 cut(s) 153, 687
TaiI ACGT 2 cut(s) 60, 577
TaqI TCGA 1 cut(s) 72
TauI GCSGC 1 cut(s) 68
TfiI GAWTC 2 cut(s) 569, 701
Tru1I TTAA 1 cut(s) 809
Tru9I TTAA 1 cut(s) 809
TscAI CASTG 1 cut(s) 423
TspDTI ATGAA 3 cut(s) 366, 402, 582
TspGWI ACGGA 1 cut(s) 259
TspRI CASTG 1 cut(s) 423
VpaK11BI GGWCC 2 cut(s) 123, 278
XhoI CTCGAG 1 cut(s) 71
XmnI GAANNNNTTC 1 cut(s) 342
XspI CTAG 2 cut(s) 843, 894
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.