FvH4_2g30190

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0012836
Physical Location & Seq
Reverse (-)
23351488 .. 23354417
2930 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g30190.t1

Sequence Viewer

Length: 945 bp
ATGGTAGGCGGTGGAAACAGGAGAGACGAGGGATCGCTCGTCATCAAGAACACGAACGTTTTCGCAGCGCTCGAGACTCTGAGGAAGAAGAAGAAGTCCGATAAGAAGAGCAAAGGGACATCCAAGGACCAGTCCGGGCAGGCCAAGGCGCCGGAGCCGCAGGTGGTCTGGACGCCAGCTCCGTTGAACGCCAAGTCGTGGGCGGATGTGGATGACGAAGACGATGATGACTATTATGCCACCACCGCCCCGATTCAGCCGGTTTGGGGAACCTCTGAGCCTCAGCCGAGTAGTAAGCAGAAGGCCTCTACTGTAGAGGAAAGTGAGAGTGAAGAAGATATTCTTGATGAAGGCGATGAAGATGAGGAAGAGCATGAACCAGAGGCTCCAGTTCATCCTGAGCCAGTGGTGAAGAAGCCTGCTGAGGTTCCTGCCCCACCAAAGGAGGCAGAAAAGCAACTTTCAAAGAAGGAGAAGAAGAAAAAGGAACTTGCAGAACTTGAGGCTCTTCTAGCTGATTTTGCAGTTACCCAGAAGGAAAGTGACAGTCAAGATGAATCACGCGGTGCTGCACAAGACAAGGATAGTGCTCCTAATGGACATGCGGAAAAGAAGGAAAATCATCCTGCAGAGTCCAAAAGCTCCAAGAAGAAGAAAAAGAAAGCTTCCAAGGATGCAAAAGAATCACAGGATCAACCAAACAACTCAGGGGTGACTAATGGACCAAGTGAAGTTGCAGGAACTGAACAGTCGGAAGAGGAACCATCAGCAGTTGACGTGAAAGAGCGACTAAAGAAGATGGCAACTGCCAAGAAGAAGAAAAGTACTAAAGAGTTGGATGCGGCTGCAAAAGCTGCTGCTCAAGAGGCTGCTGCCAGGAGAGCAAAACTTGCTGCGGCCAAGAAGAAAGAGAAGAACCATTATAACCAGCAGCCTGTGCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

315

Amino Acids

34.21

Weight (kDa)

5.81

Isoelectric Point (pI)

56.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012836)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25670 AT2G25670 AT4G32610
fragaria_vesca FvH4_2g30190
malus_domestica MD15G1114900.v1.1
prunus_persica Prupe.1G466300_v2.0.a1 Prupe.1G466300_v2.0.a1
pyrus_communis pycom15g10350
rosa_chinensis RchiOBHm_Chr6g0312721
rosa_multiflora Rmu_ssc0000412.1_g000011
rosa_roxburghii Rroxscaffold_7G00156560
rosa_rugosa Rorug06G0398600 Rorug06G0398800
rosa_samantha Rh6AG516000 Rh6BG527300 Rh6CG532200 Rh6DG518300
rosa_wichuraiana Rw6G044830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 924
AarI CACCTGC 1 cut(s) 151
Acc36I ACCTGC 1 cut(s) 151
AccB1I GGYRCC 1 cut(s) 148
AccB7I CCANNNNNTGG 1 cut(s) 198
AccII CGCG 1 cut(s) 564
AciI CCGC 9 cut(s) 9, 158, 203, 246, 564, 605, 842, 896, 940
AclI AACGTT 1 cut(s) 57
AclWI GGATC 2 cut(s) 40, 699
AcoI YGGCCR 1 cut(s) 897
AcyI GRCGYC 2 cut(s) 149, 173
AdeI CACNNNGTG 1 cut(s) 566
AfaI GTAC 1 cut(s) 826
AfeI AGCGCT 1 cut(s) 69
AfiI CCNNNNNNNGG 3 cut(s) 198, 266, 442
AgsI TTSAA 2 cut(s) 187, 465
AjiI CACGTC 1 cut(s) 778
AjnI CCWGG 1 cut(s) 875
AluBI AGCT 5 cut(s) 179, 515, 642, 665, 854
AluI AGCT 5 cut(s) 179, 515, 642, 665, 854
Alw21I GWGCWC 1 cut(s) 592
Alw26I GTCTC 2 cut(s) 18, 68
AlwI GGATC 2 cut(s) 40, 699
AlwNI CAGNNNCTG 1 cut(s) 743
Ama87I CYCGRG 1 cut(s) 71
Aor51HI AGCGCT 1 cut(s) 69
AoxI GGCC 3 cut(s) 141, 303, 897
ApeKI GCWGC 9 cut(s) 65, 569, 845, 854, 857, 869, 872, 893, 931
Asp700I GAANNNNTTC 2 cut(s) 59, 339
AspLEI GCGC 2 cut(s) 70, 151
AspS9I GGNCC 2 cut(s) 127, 722
AsuC2I CCSGG 1 cut(s) 136
AsuHPI GGTGA 2 cut(s) 421, 724
AvaI CYCGRG 1 cut(s) 71
AvaII GGWCC 2 cut(s) 127, 722
BanI GGYRCC 1 cut(s) 148
BbsI GAAGAC 1 cut(s) 225
Bbv12I GWGCWC 1 cut(s) 592
BbvCI CCTCAGC 2 cut(s) 282, 423
BbvI GCAGC 8 cut(s) 77, 556, 832, 841, 844, 856, 859, 880
BccI CCATC 2 cut(s) 772, 793
BciT130I CCWGG 1 cut(s) 877
BcnI CCSGG 1 cut(s) 136
BcoDI GTCTC 2 cut(s) 18, 68
BfaI CTAG 1 cut(s) 512
BfmI CTRYAG 2 cut(s) 312, 627
BfoI RGCGCY 2 cut(s) 71, 152
BfuAI ACCTGC 1 cut(s) 151
BmcAI AGTACT 1 cut(s) 826
Bme1390I CCNGG 2 cut(s) 136, 877
Bme18I GGWCC 2 cut(s) 127, 722
BmeT110I CYCGRG 1 cut(s) 71
BmgBI CACGTC 1 cut(s) 778
BmgT120I GGNCC 2 cut(s) 127, 722
BmiI GGNNCC 6 cut(s) 150, 156, 271, 387, 429, 762
BmrFI CCNGG 2 cut(s) 136, 877
BmsI GCATC 2 cut(s) 664, 829
BpiI GAAGAC 1 cut(s) 225
BpmI CTGGAG 1 cut(s) 372
Bpu10I CCTNAGC 3 cut(s) 282, 399, 423
BpuEI CTTGAG 2 cut(s) 521, 846
BpuMI CCSGG 1 cut(s) 136
BsaHI GRCGYC 2 cut(s) 149, 173
BsaJI CCNNGG 3 cut(s) 123, 144, 669
BsaXI ACNNNNNCTCC 2 cut(s) 163, 193
Bsc4I CCNNNNNNNGG 3 cut(s) 198, 266, 442
Bse118I RCCGGY 1 cut(s) 259
Bse1I ACTGG 3 cut(s) 130, 389, 404
BseBI CCWGG 1 cut(s) 877
BseDI CCNNGG 3 cut(s) 123, 144, 669
BseGI GGATG 7 cut(s) 119, 211, 217, 394, 622, 679, 844
BseLI CCNNNNNNNGG 3 cut(s) 198, 266, 442
BseMII CTCAG 6 cut(s) 71, 267, 296, 390, 414, 720
BseNI ACTGG 3 cut(s) 130, 389, 404
BseXI GCAGC 8 cut(s) 77, 556, 832, 841, 844, 856, 859, 880
BsgI GTGCAG 1 cut(s) 555
Bsh1236I CGCG 1 cut(s) 564
BshFI GGCC 3 cut(s) 143, 305, 899
BshNI GGYRCC 1 cut(s) 148
BsiHKAI GWGCWC 1 cut(s) 592
BsiHKCI CYCGRG 1 cut(s) 71
BsiSI CCGG 3 cut(s) 135, 152, 260
BslFI GGGAC 1 cut(s) 130
BslI CCNNNNNNNGG 3 cut(s) 198, 266, 442
BsmAI GTCTC 2 cut(s) 18, 68
BsmBI CGTCTC 1 cut(s) 18
BsmFI GGGAC 1 cut(s) 130
BsnI GGCC 3 cut(s) 143, 305, 899
BsoBI CYCGRG 1 cut(s) 71
Bsp1286I GDGCHC 1 cut(s) 592
Bsp143I GATC 2 cut(s) 32, 691
BspACI CCGC 9 cut(s) 9, 158, 203, 246, 564, 605, 842, 896, 940
BspANI GGCC 3 cut(s) 143, 305, 899
BspCNI CTCAG 6 cut(s) 72, 268, 295, 391, 415, 719
BspFNI CGCG 1 cut(s) 564
BspLI GGNNCC 6 cut(s) 150, 156, 271, 387, 429, 762
BspMAI CTGCAG 1 cut(s) 631
BspMI ACCTGC 1 cut(s) 151
BspPI GGATC 2 cut(s) 40, 699
BspQI GCTCTTC 3 cut(s) 101, 363, 513
BspT107I GGYRCC 1 cut(s) 148
BsrFI RCCGGY 1 cut(s) 259
BsrI ACTGG 3 cut(s) 130, 389, 404
BssAI RCCGGY 1 cut(s) 259
BssECI CCNNGG 3 cut(s) 123, 144, 669
BssMI GATC 2 cut(s) 32, 691
BssNI GRCGYC 2 cut(s) 149, 173
BssT1I CCWWGG 3 cut(s) 123, 144, 669
Bst2UI CCWGG 1 cut(s) 877
Bst4CI ACNGT 3 cut(s) 313, 548, 750
Bst6I CTCTTC 4 cut(s) 101, 363, 513, 750
BstACI GRCGYC 2 cut(s) 149, 173
BstAPI GCANNNNNTGC 3 cut(s) 854, 890, 937
BstC8I GCNNGC 3 cut(s) 141, 177, 420
BstDEI CTNAG 6 cut(s) 80, 276, 282, 399, 423, 706
BstF5I GGATG 7 cut(s) 119, 211, 217, 394, 622, 679, 844
BstFNI CGCG 1 cut(s) 564
BstH2I RGCGCY 2 cut(s) 71, 152
BstHHI GCGC 2 cut(s) 70, 151
BstKTI GATC 2 cut(s) 35, 694
BstMAI GTCTC 2 cut(s) 18, 68
BstMBI GATC 2 cut(s) 32, 691
BstNI CCWGG 1 cut(s) 877
BstNSI RCATGY 1 cut(s) 605
BstSCI CCNGG 2 cut(s) 134, 875
BstSFI CTRYAG 2 cut(s) 312, 627
BstUI CGCG 1 cut(s) 564
BstV1I GCAGC 8 cut(s) 77, 556, 832, 841, 844, 856, 859, 880
BstV2I GAAGAC 1 cut(s) 225
BsuRI GGCC 3 cut(s) 143, 305, 899
BtgZI GCGATG 1 cut(s) 369
BtrI CACGTC 1 cut(s) 778
BtsCI GGATG 7 cut(s) 119, 211, 217, 394, 622, 679, 844
BtsIMutI CAGTG 1 cut(s) 411
BveI ACCTGC 1 cut(s) 151
Cac8I GCNNGC 3 cut(s) 141, 177, 420
CaiI CAGNNNCTG 1 cut(s) 743
CfoI GCGC 2 cut(s) 70, 151
Cfr10I RCCGGY 1 cut(s) 259
Cfr13I GGNCC 2 cut(s) 127, 722
CseI GACGC 1 cut(s) 181
Csp6I GTAC 1 cut(s) 825
CviAII CATG 2 cut(s) 374, 602
CviQI GTAC 1 cut(s) 825
DdeI CTNAG 6 cut(s) 80, 276, 282, 399, 423, 706
DinI GGCGCC 1 cut(s) 150
DpnI GATC 2 cut(s) 34, 693
DpnII GATC 2 cut(s) 32, 691
DraIII CACNNNGTG 1 cut(s) 566
EaeI YGGCCR 1 cut(s) 897
Eam1104I CTCTTC 4 cut(s) 101, 363, 513, 750
EarI CTCTTC 4 cut(s) 101, 363, 513, 750
EciI GGCGGA 1 cut(s) 218
Eco130I CCWWGG 3 cut(s) 123, 144, 669
Eco147I AGGCCT 1 cut(s) 305
Eco47I GGWCC 2 cut(s) 127, 722
Eco47III AGCGCT 1 cut(s) 69
Eco88I CYCGRG 1 cut(s) 71
EcoRII CCWGG 1 cut(s) 875
EcoT14I CCWWGG 3 cut(s) 123, 144, 669
EgeI GGCGCC 1 cut(s) 150
EheI GGCGCC 1 cut(s) 150
ErhI CCWWGG 3 cut(s) 123, 144, 669
Esp3I CGTCTC 1 cut(s) 18
FaeI CATG 2 cut(s) 377, 605
FaiI YATR 4 cut(s) 237, 375, 603, 924
FalI AAGNNNNNCTT 2 cut(s) 327, 359
FaqI GGGAC 1 cut(s) 130
FatI CATG 2 cut(s) 373, 601
FokI GGATG 7 cut(s) 106, 218, 224, 381, 609, 686, 851
FspBI CTAG 1 cut(s) 512
GlaI GCGC 2 cut(s) 69, 150
GsuI CTGGAG 1 cut(s) 372
HaeII RGCGCY 2 cut(s) 71, 152
HaeIII GGCC 3 cut(s) 143, 305, 899
HapII CCGG 3 cut(s) 135, 152, 260
HgaI GACGC 1 cut(s) 181
HhaI GCGC 2 cut(s) 70, 151
Hin1I GRCGYC 2 cut(s) 149, 173
Hin1II CATG 2 cut(s) 377, 605
Hin6I GCGC 2 cut(s) 68, 149
HinP1I GCGC 2 cut(s) 68, 149
HincII GTYRAC 1 cut(s) 775
HindII GTYRAC 1 cut(s) 775
HindIII AAGCTT 1 cut(s) 663
HinfI GANTC 5 cut(s) 76, 253, 557, 632, 683
HpaII CCGG 3 cut(s) 135, 152, 260
HphI GGTGA 2 cut(s) 421, 724
Hpy166II GTNNAC 1 cut(s) 775
Hpy188I TCNGA 4 cut(s) 81, 100, 277, 754
Hpy188III TCNNGA 7 cut(s) 46, 73, 169, 344, 398, 551, 863
Hpy8I GTNNAC 1 cut(s) 775
HpyAV CCTTC 5 cut(s) 295, 344, 463, 529, 607
HpyCH4III ACNGT 3 cut(s) 313, 548, 750
HpyCH4IV ACGT 2 cut(s) 57, 777
HpyCH4V TGCA 7 cut(s) 494, 524, 572, 629, 677, 737, 848
HpyF3I CTNAG 6 cut(s) 80, 276, 282, 399, 423, 706
HpySE526I ACGT 2 cut(s) 57, 777
Hsp92I GRCGYC 2 cut(s) 149, 173
Hsp92II CATG 2 cut(s) 377, 605
HspAI GCGC 2 cut(s) 68, 149
KasI GGCGCC 1 cut(s) 148
Kzo9I GATC 2 cut(s) 32, 691
LguI GCTCTTC 3 cut(s) 101, 363, 513
LmnI GCTCC 5 cut(s) 154, 184, 391, 595, 647
Lsp1109I GCAGC 8 cut(s) 77, 556, 832, 841, 844, 856, 859, 880
LweI GCATC 2 cut(s) 664, 829
MaeI CTAG 1 cut(s) 512
MaeII ACGT 2 cut(s) 57, 777
MaeIII GTNAC 3 cut(s) 526, 542, 712
MalI GATC 2 cut(s) 34, 693
MboI GATC 2 cut(s) 32, 691
MhlI GDGCHC 1 cut(s) 592
Mly113I GGCGCC 1 cut(s) 149
MlyI GAGTC 2 cut(s) 70, 641
MmeI TCCRAC 2 cut(s) 732, 816
MroXI GAANNNNTTC 2 cut(s) 59, 339
MspI CCGG 3 cut(s) 135, 152, 260
MspR9I CCNGG 2 cut(s) 136, 877
MvaI CCWGG 1 cut(s) 877
MvnI CGCG 1 cut(s) 564
NarI GGCGCC 1 cut(s) 149
NciI CCSGG 1 cut(s) 136
NdeII GATC 2 cut(s) 32, 691
NlaIII CATG 2 cut(s) 377, 605
NlaIV GGNNCC 6 cut(s) 150, 156, 271, 387, 429, 762
NmeAIII GCCGAG 1 cut(s) 312
NmuCI GTSAC 2 cut(s) 542, 712
NspI RCATGY 1 cut(s) 605
PaeR7I CTCGAG 1 cut(s) 71
PaqCI CACCTGC 1 cut(s) 151
PceI AGGCCT 1 cut(s) 305
PciSI GCTCTTC 3 cut(s) 101, 363, 513
PcsI WCGNNNNNNNCGW 2 cut(s) 69, 179
PdmI GAANNNNTTC 2 cut(s) 59, 339
PfeI GAWTC 3 cut(s) 253, 557, 683
PflMI CCANNNNNTGG 1 cut(s) 198
PleI GAGTC 2 cut(s) 70, 640
PluTI GGCGCC 1 cut(s) 152
PpsI GAGTC 2 cut(s) 70, 640
PsiI TTATAA 1 cut(s) 924
Psp1406I AACGTT 1 cut(s) 57
Psp6I CCWGG 1 cut(s) 875
PspGI CCWGG 1 cut(s) 875
PspN4I GGNNCC 6 cut(s) 150, 156, 271, 387, 429, 762
PspPI GGNCC 2 cut(s) 127, 722
PstI CTGCAG 1 cut(s) 631
PstNI CAGNNNCTG 1 cut(s) 743
RsaI GTAC 1 cut(s) 826
RsaNI GTAC 1 cut(s) 825
SapI GCTCTTC 3 cut(s) 101, 363, 513
Sau3AI GATC 2 cut(s) 32, 691
Sau96I GGNCC 2 cut(s) 127, 722
ScaI AGTACT 1 cut(s) 826
SchI GAGTC 2 cut(s) 70, 641
ScrFI CCNGG 2 cut(s) 136, 877
SduI GDGCHC 1 cut(s) 592
SfaNI GCATC 2 cut(s) 664, 829
SfcI CTRYAG 2 cut(s) 312, 627
SfoI GGCGCC 1 cut(s) 150
Sfr274I CTCGAG 1 cut(s) 71
SinI GGWCC 2 cut(s) 127, 722
SlaI CTCGAG 1 cut(s) 71
SmlI CTYRAG 3 cut(s) 71, 500, 861
SmoI CTYRAG 3 cut(s) 71, 500, 861
SseBI AGGCCT 1 cut(s) 305
SsiI CCGC 9 cut(s) 9, 158, 203, 246, 564, 605, 842, 896, 940
SspDI GGCGCC 1 cut(s) 148
SspMI CTAG 1 cut(s) 512
StuI AGGCCT 1 cut(s) 305
StyD4I CCNGG 2 cut(s) 134, 875
StyI CCWWGG 3 cut(s) 123, 144, 669
TaaI ACNGT 3 cut(s) 313, 548, 750
TaiI ACGT 2 cut(s) 60, 780
TaqI TCGA 1 cut(s) 72
TatI WGTACW 1 cut(s) 824
TauI GCSGC 3 cut(s) 160, 845, 899
TfiI GAWTC 3 cut(s) 253, 557, 683
TscAI CASTG 1 cut(s) 411
TseFI GTSAC 2 cut(s) 542, 712
TseI GCWGC 9 cut(s) 65, 569, 845, 854, 857, 869, 872, 893, 931
Tsp45I GTSAC 2 cut(s) 542, 712
TspDTI ATGAA 5 cut(s) 363, 372, 383, 390, 570
TspGWI ACGGA 1 cut(s) 171
TspRI CASTG 1 cut(s) 411
Van91I CCANNNNNTGG 1 cut(s) 198
VpaK11BI GGWCC 2 cut(s) 127, 722
XceI RCATGY 1 cut(s) 605
XhoI CTCGAG 1 cut(s) 71
XmnI GAANNNNTTC 2 cut(s) 59, 339
XspI CTAG 1 cut(s) 512
ZrmI AGTACT 1 cut(s) 826
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.