AT2G25830

transcriptional regulatory protein At2g25830

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0015073
Physical Location & Seq
Reverse (-)
11018716 .. 11021903
3188 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G25830.1

Sequence Viewer

Length: 996 bp
ATGGCCTCCCATTGCTCCATGAGAGTAATCCTCCTCAGATTCTCCAATGGCGTCTCTTCCAGATCCATTCTCAACTCCACTAACCATCGTCTTCTTAGTCTTACCATGACCAACACTCTCTCGTCTCTTTCCTCAATCTCTCCCCACACTACTACTTCGCATTTCACGGCTGCGTCACAACAATCAGATGACCAGAACTGCTTCCGCAAGCTTCAACTCAGAAAGATTTCGATTTCAACTCCTCTTTGTATGGGTCGTCGTTCTTCCAAAATCGCTGGTCGAAAGGGCGCTCAAGATTCAAAGAAGGCGAAGCTATACTGTAGAATTGGCAAGGAGGTTGTATCTGCTGTCAAGAAAGGGGGTCCAAACCCAGTTTCAAATACGACTCTAGCTACTATTCTTGACAAAGCTAAAGAACTGGATGTACCGAAAGACATTGTGGAGCGTAATATTAAGAGGGCTTCTGAGAAGGGGCAAGAAGCTTTTATAGAGAAGATTTACGAGGTATATGGCTACGGTGGTGTTAGTATGGTAGTCGAGGTCTTAACAGACAAAATTAATCGATCAGTGGCAGCTATTAGATCGGTTGTTAAGGATTATGGGGGAAAAATGGCTGATTCAGGATCTGTCATGTTCAAGTTTAAAAGAGTTAGGGTAGTGAATATAAAGGTCACCGAAGCTGACAAAGATCAGCTCCTTATTATTGCTTTAGATGCTGGAGCAGAGGATGTTATTGAACCCCCAACTTATGAAGATGATACTGATGAAGACAGGGAAGAGAGGTACTACAAAATTGTAACTTCTAATGAGAACTACTCAACAATATTATCAAAGCTACGTGATGAAGGAGTGAACTTCGAGCCTGACAATGGCTCTGAACTGCTCCCTCTGACTACAGTTGAGGTGGATGATGAGGCCATGGAATTGAACAAAGAGCTAATGCAGAAACTACTAGAACTTGATGATGTTGATGCTGTTTATATCGACCAAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transcrip_reg

Protein Analysis

331

Amino Acids

36.81

Weight (kDa)

6.19

Isoelectric Point (pI)

35.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TACO1_YebC_N PF20772 87 - 156 2.3e-23 TACO1/YebC protein N-terminal domain
Transcrip_reg PF01709 164 - 328 1.8e-39 TACO1/YebC second and third domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015073)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25830
fragaria_vesca FvH4_2g35600 FvH4_2g35600
malus_domestica MD08G1113700.v1.1
prunus_persica Prupe.1G448300_v2.0.a1
pyrus_communis pycom08g09440
rosa_chinensis RchiOBHm_Chr6g0306211
rosa_laevigata RLG00000010813
rosa_multiflora Rmu_sc0003594.1_g000003
rosa_roxburghii Rroxscaffold_7G00161930
rosa_rugosa Rorug06G0348100
rosa_samantha Rh6AG460600 Rh6BG440800 Rh6CG474600 Rh6DG460900
rosa_wichuraiana Rw6G040120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 205
AclWI GGATC 2 cut(s) 57, 631
AcyI GRCGYC 1 cut(s) 51
AfaI GTAC 2 cut(s) 426, 785
AfiI CCNNNNNNNGG 1 cut(s) 869
AgsI TTSAA 7 cut(s) 215, 237, 300, 378, 637, 737, 928
AjuI GAANNNNNNNTTGG 2 cut(s) 358, 390
Alw26I GTCTC 2 cut(s) 58, 129
AlwI GGATC 2 cut(s) 57, 631
AlwNI CAGNNNCTG 1 cut(s) 626
AoxI GGCC 2 cut(s) 3, 915
ApeKI GCWGC 2 cut(s) 170, 572
AseI ATTAAT 1 cut(s) 558
Asp700I GAANNNNTTC 2 cut(s) 200, 226
AspLEI GCGC 1 cut(s) 290
AspS9I GGNCC 1 cut(s) 362
AsuHPI GGTGA 1 cut(s) 664
AvaII GGWCC 1 cut(s) 362
BbsI GAAGAC 2 cut(s) 83, 774
BbvI GCAGC 2 cut(s) 157, 584
BccI CCATC 1 cut(s) 93
BceAI ACGGC 1 cut(s) 183
BcoDI GTCTC 2 cut(s) 58, 129
BfaI CTAG 2 cut(s) 389, 953
BfmI CTRYAG 2 cut(s) 319, 894
BfoI RGCGCY 1 cut(s) 291
BisI GCNGC 2 cut(s) 171, 573
BlsI GCNGC 2 cut(s) 172, 574
Bme18I GGWCC 1 cut(s) 362
BmgT120I GGNCC 1 cut(s) 362
BmiI GGNNCC 1 cut(s) 363
BmrI ACTGGG 1 cut(s) 365
BmsI GCATC 2 cut(s) 703, 961
BmuI ACTGGG 1 cut(s) 365
BpiI GAAGAC 2 cut(s) 83, 774
BplI GAGNNNNNCTC 4 cut(s) 15, 47, 800, 832
BpmI CTGGAG 1 cut(s) 738
BpuEI CTTGAG 1 cut(s) 276
Bsa29I ATCGAT 1 cut(s) 562
BsaAI YACGTR 1 cut(s) 839
BsaHI GRCGYC 1 cut(s) 51
BsaJI CCNNGG 1 cut(s) 918
Bsc4I CCNNNNNNNGG 1 cut(s) 869
Bse1I ACTGG 2 cut(s) 371, 423
Bse3DI GCAATG 1 cut(s) 10
BseCI ATCGAT 1 cut(s) 562
BseDI CCNNGG 1 cut(s) 918
BseGI GGATG 3 cut(s) 427, 733, 913
BseLI CCNNNNNNNGG 1 cut(s) 869
BseMI GCAATG 1 cut(s) 10
BseMII CTCAG 3 cut(s) 49, 232, 456
BseNI ACTGG 2 cut(s) 371, 423
BseRI GAGGAG 2 cut(s) 23, 231
BseXI GCAGC 2 cut(s) 157, 584
BshFI GGCC 2 cut(s) 5, 917
BshVI ATCGAT 1 cut(s) 562
BslI CCNNNNNNNGG 1 cut(s) 869
BsmAI GTCTC 2 cut(s) 58, 129
BsmBI CGTCTC 2 cut(s) 58, 129
BsnI GGCC 2 cut(s) 5, 917
Bsp143I GATC 5 cut(s) 62, 563, 581, 623, 688
Bsp19I CCATGG 1 cut(s) 918
BspACI CCGC 1 cut(s) 205
BspANI GGCC 2 cut(s) 5, 917
BspCNI CTCAG 3 cut(s) 48, 231, 457
BspDI ATCGAT 1 cut(s) 562
BspLI GGNNCC 1 cut(s) 363
BspPI GGATC 2 cut(s) 57, 631
BsrDI GCAATG 1 cut(s) 10
BsrI ACTGG 2 cut(s) 371, 423
BssECI CCNNGG 1 cut(s) 918
BssMI GATC 5 cut(s) 62, 563, 581, 623, 688
BssNI GRCGYC 1 cut(s) 51
BssT1I CCWWGG 1 cut(s) 918
Bst4CI ACNGT 3 cut(s) 320, 518, 898
Bst6I CTCTTC 2 cut(s) 61, 771
BstACI GRCGYC 1 cut(s) 51
BstBAI YACGTR 1 cut(s) 839
BstC8I GCNNGC 1 cut(s) 209
BstDEI CTNAG 4 cut(s) 35, 95, 218, 465
BstDSI CCRYGG 1 cut(s) 918
BstEII GGTNACC 1 cut(s) 670
BstF5I GGATG 3 cut(s) 427, 733, 913
BstH2I RGCGCY 1 cut(s) 291
BstHHI GCGC 1 cut(s) 290
BstKTI GATC 5 cut(s) 65, 566, 584, 626, 691
BstMAI GTCTC 2 cut(s) 58, 129
BstMBI GATC 5 cut(s) 62, 563, 581, 623, 688
BstMWI GCNNNNNNNGC 1 cut(s) 713
BstPI GGTNACC 1 cut(s) 670
BstSFI CTRYAG 2 cut(s) 319, 894
BstV1I GCAGC 2 cut(s) 157, 584
BstV2I GAAGAC 2 cut(s) 83, 774
BstX2I RGATCY 2 cut(s) 62, 623
BstYI RGATCY 2 cut(s) 62, 623
Bsu15I ATCGAT 1 cut(s) 562
BsuRI GGCC 2 cut(s) 5, 917
BsuTUI ATCGAT 1 cut(s) 562
BtgI CCRYGG 1 cut(s) 918
BtsCI GGATG 3 cut(s) 427, 733, 913
BtsIMutI CAGTG 1 cut(s) 573
Cac8I GCNNGC 1 cut(s) 209
CaiI CAGNNNCTG 1 cut(s) 626
CfoI GCGC 1 cut(s) 290
Cfr13I GGNCC 1 cut(s) 362
ClaI ATCGAT 1 cut(s) 562
CseI GACGC 2 cut(s) 40, 162
Csp6I GTAC 2 cut(s) 425, 784
CviAII CATG 4 cut(s) 19, 106, 631, 919
CviQI GTAC 2 cut(s) 425, 784
DdeI CTNAG 4 cut(s) 35, 95, 218, 465
DpnI GATC 5 cut(s) 64, 565, 583, 625, 690
DpnII GATC 5 cut(s) 62, 563, 581, 623, 688
DraI TTTAAA 1 cut(s) 643
Eam1104I CTCTTC 2 cut(s) 61, 771
EarI CTCTTC 2 cut(s) 61, 771
Eco130I CCWWGG 1 cut(s) 918
Eco47I GGWCC 1 cut(s) 362
Eco91I GGTNACC 1 cut(s) 670
EcoO65I GGTNACC 1 cut(s) 670
EcoT14I CCWWGG 1 cut(s) 918
ErhI CCWWGG 1 cut(s) 918
Esp3I CGTCTC 2 cut(s) 58, 129
FaeI CATG 4 cut(s) 22, 109, 634, 922
FatI CATG 4 cut(s) 18, 105, 630, 918
Fnu4HI GCNGC 2 cut(s) 171, 573
FokI GGATG 3 cut(s) 434, 740, 920
Fsp4HI GCNGC 2 cut(s) 171, 573
FspBI CTAG 2 cut(s) 389, 953
GlaI GCGC 1 cut(s) 289
GluI GCNGC 2 cut(s) 171, 573
GsuI CTGGAG 1 cut(s) 738
HaeII RGCGCY 1 cut(s) 291
HaeIII GGCC 2 cut(s) 5, 917
HgaI GACGC 2 cut(s) 40, 162
HhaI GCGC 1 cut(s) 290
Hin1I GRCGYC 1 cut(s) 51
Hin1II CATG 4 cut(s) 22, 109, 634, 922
Hin6I GCGC 1 cut(s) 288
HinP1I GCGC 1 cut(s) 288
HindIII AAGCTT 2 cut(s) 209, 480
HinfI GANTC 4 cut(s) 39, 296, 385, 617
HphI GGTGA 1 cut(s) 664
Hpy166II GTNNAC 1 cut(s) 853
Hpy188I TCNGA 6 cut(s) 38, 187, 221, 466, 877, 891
Hpy188III TCNNGA 5 cut(s) 60, 293, 352, 401, 621
Hpy8I GTNNAC 1 cut(s) 853
Hpy99I CGWCG 1 cut(s) 261
HpyAV CCTTC 3 cut(s) 298, 463, 839
HpyCH4III ACNGT 3 cut(s) 320, 518, 898
HpyCH4IV ACGT 1 cut(s) 838
HpyCH4V TGCA 1 cut(s) 943
HpyF10VI GCNNNNNNNGC 1 cut(s) 713
HpyF3I CTNAG 4 cut(s) 35, 95, 218, 465
HpySE526I ACGT 1 cut(s) 838
Hsp92I GRCGYC 1 cut(s) 51
Hsp92II CATG 4 cut(s) 22, 109, 634, 922
HspAI GCGC 1 cut(s) 288
Kzo9I GATC 5 cut(s) 62, 563, 581, 623, 688
LmnI GCTCC 5 cut(s) 20, 442, 699, 719, 888
LpnPI CCDG 9 cut(s) 73, 206, 261, 384, 404, 606, 702, 757, 876
Lsp1109I GCAGC 2 cut(s) 157, 584
LweI GCATC 2 cut(s) 703, 961
MaeI CTAG 2 cut(s) 389, 953
MaeII ACGT 1 cut(s) 838
MaeIII GTNAC 3 cut(s) 174, 670, 796
MalI GATC 5 cut(s) 64, 565, 583, 625, 690
MboI GATC 5 cut(s) 62, 563, 581, 623, 688
MboII GAAGA 7 cut(s) 48, 83, 255, 505, 764, 779, 788
MflI RGATCY 2 cut(s) 62, 623
MluCI AATT 4 cut(s) 324, 555, 792, 923
MlyI GAGTC 1 cut(s) 379
MroXI GAANNNNTTC 2 cut(s) 200, 226
MseI TTAA 5 cut(s) 453, 545, 558, 591, 642
MwoI GCNNNNNNNGC 1 cut(s) 713
NcoI CCATGG 1 cut(s) 918
NdeII GATC 5 cut(s) 62, 563, 581, 623, 688
NlaIII CATG 4 cut(s) 22, 109, 634, 922
NlaIV GGNNCC 1 cut(s) 363
NmuCI GTSAC 2 cut(s) 174, 670
PdmI GAANNNNTTC 2 cut(s) 200, 226
PfeI GAWTC 3 cut(s) 39, 296, 617
PkrI GCNGC 2 cut(s) 172, 574
PleI GAGTC 1 cut(s) 379
PpsI GAGTC 1 cut(s) 379
Ppu21I YACGTR 1 cut(s) 839
PshBI ATTAAT 1 cut(s) 558
PspEI GGTNACC 1 cut(s) 670
PspN4I GGNNCC 1 cut(s) 363
PspPI GGNCC 1 cut(s) 362
PsrI GAACNNNNNNTAC 2 cut(s) 408, 440
PstNI CAGNNNCTG 1 cut(s) 626
PsuI RGATCY 2 cut(s) 62, 623
RsaI GTAC 2 cut(s) 426, 785
RsaNI GTAC 2 cut(s) 425, 784
SaqAI TTAA 5 cut(s) 453, 545, 558, 591, 642
SatI GCNGC 2 cut(s) 171, 573
Sau3AI GATC 5 cut(s) 62, 563, 581, 623, 688
Sau96I GGNCC 1 cut(s) 362
SchI GAGTC 1 cut(s) 379
SfaNI GCATC 2 cut(s) 703, 961
SfcI CTRYAG 2 cut(s) 319, 894
SinI GGWCC 1 cut(s) 362
SmlI CTYRAG 1 cut(s) 291
SmoI CTYRAG 1 cut(s) 291
Sse9I AATT 4 cut(s) 324, 555, 792, 923
SsiI CCGC 1 cut(s) 205
SspI AATATT 2 cut(s) 451, 825
SspMI CTAG 2 cut(s) 389, 953
StyI CCWWGG 1 cut(s) 918
TaaI ACNGT 3 cut(s) 320, 518, 898
TaiI ACGT 1 cut(s) 841
TaqI TCGA 6 cut(s) 230, 280, 537, 562, 858, 984
TasI AATT 4 cut(s) 324, 555, 792, 923
TfiI GAWTC 3 cut(s) 39, 296, 617
Tru1I TTAA 5 cut(s) 453, 545, 558, 591, 642
Tru9I TTAA 5 cut(s) 453, 545, 558, 591, 642
TscAI CASTG 1 cut(s) 573
TseFI GTSAC 2 cut(s) 174, 670
TseI GCWGC 2 cut(s) 170, 572
Tsp45I GTSAC 2 cut(s) 174, 670
TspDTI ATGAA 3 cut(s) 765, 780, 858
TspRI CASTG 1 cut(s) 573
VpaK11BI GGWCC 1 cut(s) 362
VspI ATTAAT 1 cut(s) 558
XmnI GAANNNNTTC 2 cut(s) 200, 226
XspI CTAG 2 cut(s) 389, 953
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.