Rh6CG474600

transcriptional regulatory protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0015073
Physical Location & Seq
Reverse (-)
64415753 .. 64418412
2660 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG474600.1

Sequence Viewer

Length: 759 bp
ATGGGGTCATCTTGTACAACCAGAGCTTTAGGTTCAATCCTTCATAAATTCACCACTGGTGTCTCTTCCAAATGGCCCAACGCCTCAGCCAGGACTGGTTTGCTGAGTAGAAACTTATCATCTTCATCTTCCATTTCACCATTGCCTTTTTCATGGATTTCGACGCCTATAGGAAGCAGCCCCGGAGCGAGGAGAACCATACGGACCATCTCTCCTCACTCCATGGGTAGACGTTCCAGCAAGATCGCTGGCCGAAAGGGGGCGAAGGATGCGAAGAAGGCAAAGCTGTATTCGAAGATTGGGAAGGAACTTGTGTCTGCTTTGAAGAAGGGTGGTCCAAATCCTGTTTCGAATACAGCCCTGGCTACAATATTGGAGAAAGCCAAGGAGCTTGATGTACCCAAGGAGATCTTGGATCGCAACATTAAGAAAGCTTCTGAGAAGGGACAAGAAGCTTACATTGAGAAAGTATATGAGGTATATGGTTATGGTGGAGCTAGCATGGTAGTCGAGGTATTGACAGATAAAATAACCCGATCTGTGGCAACTGTTAGAGAGGTTGTGAAGAACTGTGGCGGGAAGATGGCAGATCCAGGATCTGTTCTGTTCAAATTCAGGCGTGCTCGGGTTGTAAACATAAAAGTTTCAGATGCTGACAAAGATCAGCTCATCTCCATTGCTTTAGATGCCGGTGCTGAGGATGTTATTGAACCGCCAGTATATGAAGATGATACCGAAGAAGATCAATCAGAAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transcrip_reg

Protein Analysis

252

Amino Acids

27.13

Weight (kDa)

9.63

Isoelectric Point (pI)

51.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TACO1_YebC_N PF20772 78 - 147 2e-22 TACO1/YebC protein N-terminal domain
Transcrip_reg PF01709 153 - 242 1.5e-23 TACO1/YebC second and third domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015073)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25830
fragaria_vesca FvH4_2g35600 FvH4_2g35600
malus_domestica MD08G1113700.v1.1
prunus_persica Prupe.1G448300_v2.0.a1
pyrus_communis pycom08g09440
rosa_chinensis RchiOBHm_Chr6g0306211
rosa_laevigata RLG00000010813
rosa_multiflora Rmu_sc0003594.1_g000003
rosa_roxburghii Rroxscaffold_7G00161930
rosa_rugosa Rorug06G0348100
rosa_samantha Rh6AG460600 Rh6BG440800 Rh6CG474600 Rh6DG460900
rosa_wichuraiana Rw6G040120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 229
AciI CCGC 2 cut(s) 576, 713
AclWI GGATC 3 cut(s) 423, 584, 604
AcoI YGGCCR 1 cut(s) 250
AcsI RAATTY 2 cut(s) 47, 611
AcyI GRCGYC 1 cut(s) 164
AfaI GTAC 2 cut(s) 16, 399
AfiI CCNNNNNNNGG 4 cut(s) 90, 189, 259, 541
AgsI TTSAA 4 cut(s) 36, 325, 610, 710
AjnI CCWGG 3 cut(s) 89, 360, 592
AjuI GAANNNNNNNTTGG 2 cut(s) 331, 363
AluBI AGCT 7 cut(s) 26, 286, 391, 434, 455, 497, 667
AluI AGCT 7 cut(s) 26, 286, 391, 434, 455, 497, 667
Alw21I GWGCWC 1 cut(s) 625
Alw26I GTCTC 1 cut(s) 67
AlwI GGATC 3 cut(s) 423, 584, 604
AlwNI CAGNNNCTG 2 cut(s) 599, 653
Ama87I CYCGRG 1 cut(s) 624
AoxI GGCC 2 cut(s) 74, 250
ApeKI GCWGC 1 cut(s) 177
ApoI RAATTY 2 cut(s) 47, 611
AspS9I GGNCC 3 cut(s) 75, 204, 335
AsuC2I CCSGG 1 cut(s) 183
AsuHPI GGTGA 2 cut(s) 43, 129
AsuII TTCGAA 2 cut(s) 293, 350
AsuNHI GCTAGC 1 cut(s) 497
AvaI CYCGRG 1 cut(s) 624
AvaII GGWCC 2 cut(s) 204, 335
Bbv12I GWGCWC 1 cut(s) 625
BbvCI CCTCAGC 2 cut(s) 85, 696
BbvI GCAGC 1 cut(s) 189
BccI CCATC 2 cut(s) 215, 577
BcgI CGANNNNNNTGC 2 cut(s) 490, 524
BciT130I CCWGG 3 cut(s) 91, 362, 594
BcnI CCSGG 1 cut(s) 183
BcoDI GTCTC 1 cut(s) 67
BfaI CTAG 1 cut(s) 498
BfmI CTRYAG 1 cut(s) 168
BglII AGATCT 1 cut(s) 408
BisI GCNGC 1 cut(s) 178
BlsI GCNGC 1 cut(s) 179
Bme1390I CCNGG 4 cut(s) 91, 183, 362, 594
Bme18I GGWCC 2 cut(s) 204, 335
BmeT110I CYCGRG 1 cut(s) 624
BmgT120I GGNCC 3 cut(s) 75, 204, 335
BmrFI CCNGG 4 cut(s) 91, 183, 362, 594
BmsI GCATC 3 cut(s) 259, 640, 676
BmtI GCTAGC 1 cut(s) 501
Bpu10I CCTNAGC 2 cut(s) 85, 696
Bpu14I TTCGAA 2 cut(s) 293, 350
BpuMI CCSGG 1 cut(s) 183
BsaHI GRCGYC 1 cut(s) 164
BsaJI CCNNGG 5 cut(s) 181, 222, 360, 384, 402
BsaXI ACNNNNNCTCC 2 cut(s) 196, 226
Bsc4I CCNNNNNNNGG 4 cut(s) 90, 189, 259, 541
Bse118I RCCGGY 1 cut(s) 689
Bse1I ACTGG 3 cut(s) 61, 100, 716
Bse3DI GCAATG 2 cut(s) 140, 675
BseBI CCWGG 3 cut(s) 91, 362, 594
BseDI CCNNGG 5 cut(s) 181, 222, 360, 384, 402
BseGI GGATG 2 cut(s) 274, 706
BseLI CCNNNNNNNGG 4 cut(s) 90, 189, 259, 541
BseMI GCAATG 2 cut(s) 140, 675
BseMII CTCAG 4 cut(s) 95, 99, 429, 687
BseNI ACTGG 3 cut(s) 61, 100, 716
BseRI GAGGAG 2 cut(s) 204, 205
BseXI GCAGC 1 cut(s) 189
BshFI GGCC 2 cut(s) 76, 252
BsiHKAI GWGCWC 1 cut(s) 625
BsiHKCI CYCGRG 1 cut(s) 624
BsiSI CCGG 2 cut(s) 183, 690
BslFI GGGAC 1 cut(s) 459
BslI CCNNNNNNNGG 4 cut(s) 90, 189, 259, 541
BsmAI GTCTC 1 cut(s) 67
BsmFI GGGAC 1 cut(s) 459
BsnI GGCC 2 cut(s) 76, 252
BsoBI CYCGRG 1 cut(s) 624
Bsp119I TTCGAA 2 cut(s) 293, 350
Bsp1286I GDGCHC 1 cut(s) 625
Bsp1407I TGTACA 1 cut(s) 14
Bsp143I GATC 8 cut(s) 243, 408, 415, 536, 589, 596, 661, 742
Bsp19I CCATGG 1 cut(s) 222
BspACI CCGC 2 cut(s) 576, 713
BspANI GGCC 2 cut(s) 76, 252
BspCNI CTCAG 4 cut(s) 96, 98, 430, 688
BspOI GCTAGC 1 cut(s) 501
BspPI GGATC 3 cut(s) 423, 584, 604
BspT104I TTCGAA 2 cut(s) 293, 350
BsrDI GCAATG 2 cut(s) 140, 675
BsrFI RCCGGY 1 cut(s) 689
BsrGI TGTACA 1 cut(s) 14
BsrI ACTGG 3 cut(s) 61, 100, 716
BssAI RCCGGY 1 cut(s) 689
BssECI CCNNGG 5 cut(s) 181, 222, 360, 384, 402
BssMI GATC 8 cut(s) 243, 408, 415, 536, 589, 596, 661, 742
BssNI GRCGYC 1 cut(s) 164
BssT1I CCWWGG 3 cut(s) 222, 384, 402
Bst2UI CCWGG 3 cut(s) 91, 362, 594
Bst4CI ACNGT 2 cut(s) 550, 572
Bst6I CTCTTC 1 cut(s) 70
BstACI GRCGYC 1 cut(s) 164
BstAUI TGTACA 1 cut(s) 14
BstBI TTCGAA 2 cut(s) 293, 350
BstC8I GCNNGC 3 cut(s) 250, 499, 621
BstDEI CTNAG 4 cut(s) 85, 104, 438, 696
BstDSI CCRYGG 1 cut(s) 222
BstENI CCTNNNNNAGG 1 cut(s) 88
BstF5I GGATG 2 cut(s) 274, 706
BstKTI GATC 8 cut(s) 246, 411, 418, 539, 592, 599, 664, 745
BstMAI GTCTC 1 cut(s) 67
BstMBI GATC 8 cut(s) 243, 408, 415, 536, 589, 596, 661, 742
BstMWI GCNNNNNNNGC 3 cut(s) 269, 278, 686
BstNI CCWGG 3 cut(s) 91, 362, 594
BstSCI CCNGG 4 cut(s) 89, 181, 360, 592
BstSFI CTRYAG 1 cut(s) 168
BstV1I GCAGC 1 cut(s) 189
BstX2I RGATCY 3 cut(s) 408, 589, 596
BstYI RGATCY 3 cut(s) 408, 589, 596
BsuRI GGCC 2 cut(s) 76, 252
BtgI CCRYGG 1 cut(s) 222
BtsCI GGATG 2 cut(s) 274, 706
BtsIMutI CAGTG 1 cut(s) 54
Cac8I GCNNGC 3 cut(s) 250, 499, 621
CaiI CAGNNNCTG 2 cut(s) 599, 653
Cfr10I RCCGGY 1 cut(s) 689
Cfr13I GGNCC 3 cut(s) 75, 204, 335
CseI GACGC 1 cut(s) 172
Csp6I GTAC 2 cut(s) 15, 398
CviAII CATG 3 cut(s) 153, 223, 502
CviQI GTAC 2 cut(s) 15, 398
DdeI CTNAG 4 cut(s) 85, 104, 438, 696
DpnI GATC 8 cut(s) 245, 410, 417, 538, 591, 598, 663, 744
DpnII GATC 8 cut(s) 243, 408, 415, 536, 589, 596, 661, 742
EaeI YGGCCR 1 cut(s) 250
Eam1104I CTCTTC 1 cut(s) 70
EarI CTCTTC 1 cut(s) 70
Eco130I CCWWGG 3 cut(s) 222, 384, 402
Eco47I GGWCC 2 cut(s) 204, 335
Eco88I CYCGRG 1 cut(s) 624
EcoNI CCTNNNNNAGG 1 cut(s) 88
EcoRII CCWGG 3 cut(s) 89, 360, 592
EcoT14I CCWWGG 3 cut(s) 222, 384, 402
ErhI CCWWGG 3 cut(s) 222, 384, 402
FaeI CATG 3 cut(s) 156, 226, 505
FalI AAGNNNNNCTT 2 cut(s) 395, 427
FaqI GGGAC 1 cut(s) 459
FatI CATG 3 cut(s) 152, 222, 501
FauI CCCGC 1 cut(s) 569
FblI GTMKAC 1 cut(s) 229
Fnu4HI GCNGC 1 cut(s) 178
FokI GGATG 2 cut(s) 281, 713
Fsp4HI GCNGC 1 cut(s) 178
FspBI CTAG 1 cut(s) 498
GluI GCNGC 1 cut(s) 178
HaeIII GGCC 2 cut(s) 76, 252
HapII CCGG 2 cut(s) 183, 690
HgaI GACGC 1 cut(s) 172
Hin1I GRCGYC 1 cut(s) 164
Hin1II CATG 3 cut(s) 156, 226, 505
HindIII AAGCTT 2 cut(s) 432, 453
HpaII CCGG 2 cut(s) 183, 690
HphI GGTGA 2 cut(s) 43, 129
Hpy166II GTNNAC 2 cut(s) 230, 634
Hpy188I TCNGA 3 cut(s) 439, 649, 751
Hpy8I GTNNAC 2 cut(s) 230, 634
Hpy99I CGWCG 1 cut(s) 166
HpyAV CCTTC 6 cut(s) 50, 259, 271, 298, 322, 436
HpyCH4III ACNGT 2 cut(s) 550, 572
HpyCH4IV ACGT 1 cut(s) 232
HpyF10VI GCNNNNNNNGC 3 cut(s) 269, 278, 686
HpyF3I CTNAG 4 cut(s) 85, 104, 438, 696
HpySE526I ACGT 1 cut(s) 232
Hsp92I GRCGYC 1 cut(s) 164
Hsp92II CATG 3 cut(s) 156, 226, 505
Kzo9I GATC 8 cut(s) 243, 408, 415, 536, 589, 596, 661, 742
LmnI GCTCC 3 cut(s) 185, 388, 494
Lsp1109I GCAGC 1 cut(s) 189
LweI GCATC 3 cut(s) 259, 640, 676
MaeI CTAG 1 cut(s) 498
MaeII ACGT 1 cut(s) 232
MalI GATC 8 cut(s) 245, 410, 417, 538, 591, 598, 663, 744
MboI GATC 8 cut(s) 243, 408, 415, 536, 589, 596, 661, 742
MflI RGATCY 3 cut(s) 408, 589, 596
MhlI GDGCHC 1 cut(s) 625
MluCI AATT 2 cut(s) 47, 611
MnlI CCTC 7 cut(s) 94, 183, 225, 469, 505, 550, 691
MseI TTAA 1 cut(s) 426
MspI CCGG 2 cut(s) 183, 690
MspR9I CCNGG 4 cut(s) 91, 183, 362, 594
MvaI CCWGG 3 cut(s) 91, 362, 594
MwoI GCNNNNNNNGC 3 cut(s) 269, 278, 686
NciI CCSGG 1 cut(s) 183
NcoI CCATGG 1 cut(s) 222
NdeII GATC 8 cut(s) 243, 408, 415, 536, 589, 596, 661, 742
NheI GCTAGC 1 cut(s) 497
NlaIII CATG 3 cut(s) 156, 226, 505
NspV TTCGAA 2 cut(s) 293, 350
PfoI TCCNGGA 1 cut(s) 592
PkrI GCNGC 1 cut(s) 179
Psp6I CCWGG 3 cut(s) 89, 360, 592
PspGI CCWGG 3 cut(s) 89, 360, 592
PspPI GGNCC 3 cut(s) 75, 204, 335
PstNI CAGNNNCTG 2 cut(s) 599, 653
PsuI RGATCY 3 cut(s) 408, 589, 596
RsaI GTAC 2 cut(s) 16, 399
RsaNI GTAC 2 cut(s) 15, 398
SaqAI TTAA 1 cut(s) 426
SatI GCNGC 1 cut(s) 178
Sau3AI GATC 8 cut(s) 243, 408, 415, 536, 589, 596, 661, 742
Sau96I GGNCC 3 cut(s) 75, 204, 335
ScrFI CCNGG 4 cut(s) 91, 183, 362, 594
SduI GDGCHC 1 cut(s) 625
SfaNI GCATC 3 cut(s) 259, 640, 676
SfcI CTRYAG 1 cut(s) 168
SfuI TTCGAA 2 cut(s) 293, 350
SinI GGWCC 2 cut(s) 204, 335
Sse9I AATT 2 cut(s) 47, 611
SsiI CCGC 2 cut(s) 576, 713
SspI AATATT 1 cut(s) 372
SspMI CTAG 1 cut(s) 498
StyD4I CCNGG 4 cut(s) 89, 181, 360, 592
StyI CCWWGG 3 cut(s) 222, 384, 402
TaaI ACNGT 2 cut(s) 550, 572
TaiI ACGT 1 cut(s) 235
TaqI TCGA 4 cut(s) 161, 293, 350, 510
TasI AATT 2 cut(s) 47, 611
TatI WGTACW 1 cut(s) 14
Tru1I TTAA 1 cut(s) 426
Tru9I TTAA 1 cut(s) 426
TscAI CASTG 1 cut(s) 61
TseI GCWGC 1 cut(s) 177
TspDTI ATGAA 4 cut(s) 32, 114, 141, 738
TspGWI ACGGA 1 cut(s) 217
TspRI CASTG 1 cut(s) 61
VpaK11BI GGWCC 2 cut(s) 204, 335
XagI CCTNNNNNAGG 1 cut(s) 88
XapI RAATTY 2 cut(s) 47, 611
XcmI CCANNNNNNNNNTGG 1 cut(s) 409
XmiI GTMKAC 1 cut(s) 229
XspI CTAG 1 cut(s) 498
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.