MD08G1113700.v1.1

transcriptional regulatory protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0015073
Physical Location & Seq
Forward (+)
10121097 .. 10123700
2604 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1113700.v1.1.491

Sequence Viewer

Length: 969 bp
ATGGGGTCGTCTAGTACAATGAGAGCGTTAGGAGCAATTGTTCACAGAGTCAGCAATGGCGTCTCCTCCAAGTCCCCAAACTCCTTGGTTCTTCACTGGAATGTTCTGCTGAGCAGAAAGTTATCGTATTCATCTGCAATTTCATCATTGCCGCCATGGGTTTCGACCCACATGCACGGCGGCGCTGCAGCGAGAAGAACCATATGGACCGTCGCTCCTCTTTGTATGGGCAGGCGTTCCAGCAAAATCGCCGGCCGAAAGGGGGCTCAAGATGCAAAGAAGGCAAAGCTATATAGCAGGATAGGGAAGGAAGTTGTGTCTGCTGTAAAGAAAGGCGGTCCAAGTCCTATATCAAATATGGCCCTGGCAACTGTTTTGGAGAAAGCCAAGGAGCTTGATGTACCCAAGGAAATTGTCGAGCGCAACATTAAGAAAGCATCTGAGAAAGGACAAGAAGCTTACATTGAGAAAGTATACGAGGTATATGGTTTTGGTGGAGCTTGTATGGTAGTCGAGGTCTTGACTGATAAAATAAACCGGTCTGTGGCAGCGGTTAGAGAGGTGGTGAAGGACTGTGGGGCGAAGATGGCTGACTCAGGATCTGTTTTGTTCAAATTCAGGCGTGCTCGGGTTGTAAACATAAAAGCTTCAGATGTTGATAAGGATCAGCTCCTTTCCATTGCTTTAGATGCTGGTGCTGAGGATGTTATAGAACCGCCAGTATATGAAGATGATACCGAAGATAGTTCAGAAAGTTATTTCAAAATCGTAAGCTCATCAGAGAACTACACAACAGTACTTTCAAAGCTACGTGAGGAAGGAGTAAGTTTTGAGACGGATAATGGTTCTGAGCTGCTTCCAATAAGCGCTATTGAGGTAGATGACGAGGCTATGGATTTGAACAAGGAACTTATGTCCCAATTGCTTGAACTTGATGATGTTGATGCTGTGTATACGGACCAGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transcrip_reg

Protein Analysis

323

Amino Acids

34.99

Weight (kDa)

5.95

Isoelectric Point (pI)

46.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TACO1_YebC_N PF20772 79 - 148 4.3e-23 TACO1/YebC protein N-terminal domain
Transcrip_reg PF01709 154 - 320 1.2e-37 TACO1/YebC second and third domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015073)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25830
fragaria_vesca FvH4_2g35600 FvH4_2g35600
malus_domestica MD08G1113700.v1.1
prunus_persica Prupe.1G448300_v2.0.a1
pyrus_communis pycom08g09440
rosa_chinensis RchiOBHm_Chr6g0306211
rosa_laevigata RLG00000010813
rosa_multiflora Rmu_sc0003594.1_g000003
rosa_roxburghii Rroxscaffold_7G00161930
rosa_rugosa Rorug06G0348100
rosa_samantha Rh6AG460600 Rh6BG440800 Rh6CG474600 Rh6DG460900
rosa_wichuraiana Rw6G040120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 474, 953
AciI CCGC 5 cut(s) 152, 180, 336, 551, 716
AclWI GGATC 2 cut(s) 607, 672
AcoI YGGCCR 1 cut(s) 253
AcsI RAATTY 1 cut(s) 614
AcuI CTGAAG 1 cut(s) 633
AcyI GRCGYC 1 cut(s) 60
AfaI GTAC 3 cut(s) 16, 402, 798
AfeI AGCGCT 1 cut(s) 868
AfiI CCNNNNNNNGG 2 cut(s) 262, 544
AgeI ACCGGT 1 cut(s) 537
AgsI TTSAA 5 cut(s) 613, 763, 804, 901, 929
AjnI CCWGG 1 cut(s) 363
AloI GAACNNNNNNTCC 2 cut(s) 24, 56
AluBI AGCT 9 cut(s) 289, 394, 458, 500, 647, 670, 774, 808, 853
AluI AGCT 9 cut(s) 289, 394, 458, 500, 647, 670, 774, 808, 853
Alw21I GWGCWC 1 cut(s) 628
Alw26I GTCTC 2 cut(s) 67, 827
AlwI GGATC 2 cut(s) 607, 672
AlwNI CAGNNNCTG 1 cut(s) 602
Ama87I CYCGRG 1 cut(s) 627
Aor51HI AGCGCT 1 cut(s) 868
AoxI GGCC 2 cut(s) 253, 360
ApeKI GCWGC 4 cut(s) 185, 188, 548, 853
ApoI RAATTY 1 cut(s) 614
AsiGI ACCGGT 1 cut(s) 537
AspLEI GCGC 3 cut(s) 185, 423, 869
AspS9I GGNCC 4 cut(s) 207, 338, 361, 958
AsuHPI GGTGA 1 cut(s) 577
AvaI CYCGRG 1 cut(s) 627
AvaII GGWCC 3 cut(s) 207, 338, 958
BanII GRGCYC 1 cut(s) 268
Bbv12I GWGCWC 1 cut(s) 628
BbvCI CCTCAGC 1 cut(s) 699
BbvI GCAGC 4 cut(s) 172, 200, 560, 840
BccI CCATC 1 cut(s) 580
BceAI ACGGC 1 cut(s) 193
BcgI CGANNNNNNTGC 2 cut(s) 154, 188
BciT130I CCWGG 1 cut(s) 365
BcoDI GTCTC 2 cut(s) 67, 827
BfaI CTAG 1 cut(s) 12
BfmI CTRYAG 1 cut(s) 186
BfoI RGCGCY 2 cut(s) 186, 870
BisI GCNGC 6 cut(s) 152, 181, 186, 189, 549, 854
BlpI GCTNAGC 1 cut(s) 110
BlsI GCNGC 6 cut(s) 153, 182, 187, 190, 550, 855
BmcAI AGTACT 1 cut(s) 798
Bme1390I CCNGG 1 cut(s) 365
Bme18I GGWCC 3 cut(s) 207, 338, 958
BmeT110I CYCGRG 1 cut(s) 627
BmgT120I GGNCC 4 cut(s) 207, 338, 361, 958
BmrFI CCNGG 1 cut(s) 365
BmsI GCATC 4 cut(s) 262, 446, 679, 934
Bpu10I CCTNAGC 1 cut(s) 699
Bpu1102I GCTNAGC 1 cut(s) 110
BpuEI CTTGAG 1 cut(s) 252
BsaAI YACGTR 1 cut(s) 812
BsaBI GATNNNNATC 1 cut(s) 663
BsaHI GRCGYC 1 cut(s) 60
BsaJI CCNNGG 5 cut(s) 84, 155, 363, 387, 405
BsaWI WCCGGW 1 cut(s) 537
BsaXI ACNNNNNCTCC 4 cut(s) 24, 54, 199, 229
Bsc4I CCNNNNNNNGG 2 cut(s) 262, 544
Bse118I RCCGGY 2 cut(s) 251, 537
Bse1I ACTGG 2 cut(s) 101, 719
Bse3DI GCAATG 3 cut(s) 61, 146, 678
Bse8I GATNNNNATC 1 cut(s) 663
BseBI CCWGG 1 cut(s) 365
BseDI CCNNGG 5 cut(s) 84, 155, 363, 387, 405
BseGI GGATG 1 cut(s) 709
BseJI GATNNNNATC 1 cut(s) 663
BseLI CCNNNNNNNGG 2 cut(s) 262, 544
BseMI GCAATG 3 cut(s) 61, 146, 678
BseMII CTCAG 5 cut(s) 101, 432, 609, 690, 840
BseNI ACTGG 2 cut(s) 101, 719
BseRI GAGGAG 2 cut(s) 55, 207
BseX3I CGGCCG 1 cut(s) 253
BseXI GCAGC 4 cut(s) 172, 200, 560, 840
Bsh1285I CGRYCG 1 cut(s) 256
BshFI GGCC 2 cut(s) 255, 362
BshTI ACCGGT 1 cut(s) 537
BsiEI CGRYCG 1 cut(s) 256
BsiHKAI GWGCWC 1 cut(s) 628
BsiHKCI CYCGRG 1 cut(s) 627
BsiSI CCGG 2 cut(s) 252, 538
BslFI GGGAC 2 cut(s) 58, 901
BslI CCNNNNNNNGG 2 cut(s) 262, 544
BsmAI GTCTC 2 cut(s) 67, 827
BsmBI CGTCTC 2 cut(s) 67, 827
BsmFI GGGAC 2 cut(s) 58, 901
BsnI GGCC 2 cut(s) 255, 362
BsoBI CYCGRG 1 cut(s) 627
Bsp1286I GDGCHC 2 cut(s) 268, 628
Bsp143I GATC 2 cut(s) 599, 664
Bsp1720I GCTNAGC 1 cut(s) 110
Bsp19I CCATGG 1 cut(s) 155
BspACI CCGC 5 cut(s) 152, 180, 336, 551, 716
BspANI GGCC 2 cut(s) 255, 362
BspCNI CTCAG 5 cut(s) 102, 433, 608, 691, 841
BspMAI CTGCAG 1 cut(s) 190
BspPI GGATC 2 cut(s) 607, 672
BsrDI GCAATG 3 cut(s) 61, 146, 678
BsrFI RCCGGY 2 cut(s) 251, 537
BsrI ACTGG 2 cut(s) 101, 719
BssAI RCCGGY 2 cut(s) 251, 537
BssECI CCNNGG 5 cut(s) 84, 155, 363, 387, 405
BssMI GATC 2 cut(s) 599, 664
BssNAI GTATAC 2 cut(s) 475, 954
BssNI GRCGYC 1 cut(s) 60
BssT1I CCWWGG 4 cut(s) 84, 155, 387, 405
Bst1107I GTATAC 2 cut(s) 475, 954
Bst2UI CCWGG 1 cut(s) 365
Bst4CI ACNGT 4 cut(s) 211, 373, 575, 796
BstACI GRCGYC 1 cut(s) 60
BstBAI YACGTR 1 cut(s) 812
BstC8I GCNNGC 3 cut(s) 233, 253, 624
BstDEI CTNAG 5 cut(s) 110, 441, 595, 699, 849
BstDSI CCRYGG 1 cut(s) 155
BstF5I GGATG 1 cut(s) 709
BstH2I RGCGCY 2 cut(s) 186, 870
BstHHI GCGC 3 cut(s) 185, 423, 869
BstKTI GATC 2 cut(s) 602, 667
BstMAI GTCTC 2 cut(s) 67, 827
BstMBI GATC 2 cut(s) 599, 664
BstMCI CGRYCG 1 cut(s) 256
BstMWI GCNNNNNNNGC 5 cut(s) 32, 272, 281, 587, 689
BstNI CCWGG 1 cut(s) 365
BstNSI RCATGY 1 cut(s) 175
BstSCI CCNGG 1 cut(s) 363
BstSFI CTRYAG 1 cut(s) 186
BstV1I GCAGC 4 cut(s) 172, 200, 560, 840
BstX2I RGATCY 1 cut(s) 599
BstYI RGATCY 1 cut(s) 599
BstZ17I GTATAC 2 cut(s) 475, 954
BstZI CGGCCG 1 cut(s) 253
BsuRI GGCC 2 cut(s) 255, 362
BtgI CCRYGG 1 cut(s) 155
BtsCI GGATG 1 cut(s) 709
BtsIMutI CAGTG 1 cut(s) 94
Cac8I GCNNGC 3 cut(s) 233, 253, 624
CaiI CAGNNNCTG 1 cut(s) 602
CfoI GCGC 3 cut(s) 185, 423, 869
Cfr10I RCCGGY 2 cut(s) 251, 537
Cfr13I GGNCC 4 cut(s) 207, 338, 361, 958
CseI GACGC 1 cut(s) 49
Csp6I GTAC 3 cut(s) 15, 401, 797
CspAI ACCGGT 1 cut(s) 537
CviAII CATG 2 cut(s) 156, 172
CviQI GTAC 3 cut(s) 15, 401, 797
DdeI CTNAG 5 cut(s) 110, 441, 595, 699, 849
DpnI GATC 2 cut(s) 601, 666
DpnII GATC 2 cut(s) 599, 664
EaeI YGGCCR 1 cut(s) 253
EagI CGGCCG 1 cut(s) 253
EclXI CGGCCG 1 cut(s) 253
Eco130I CCWWGG 4 cut(s) 84, 155, 387, 405
Eco24I GRGCYC 1 cut(s) 268
Eco47I GGWCC 3 cut(s) 207, 338, 958
Eco47III AGCGCT 1 cut(s) 868
Eco52I CGGCCG 1 cut(s) 253
Eco57I CTGAAG 1 cut(s) 633
Eco88I CYCGRG 1 cut(s) 627
EcoRII CCWGG 1 cut(s) 363
EcoT14I CCWWGG 4 cut(s) 84, 155, 387, 405
EcoT38I GRGCYC 1 cut(s) 268
ErhI CCWWGG 4 cut(s) 84, 155, 387, 405
Esp3I CGTCTC 2 cut(s) 67, 827
FaeI CATG 2 cut(s) 159, 175
FaqI GGGAC 2 cut(s) 58, 901
FatI CATG 2 cut(s) 155, 171
FauNDI CATATG 1 cut(s) 203
FblI GTMKAC 2 cut(s) 474, 953
Fnu4HI GCNGC 6 cut(s) 152, 181, 186, 189, 549, 854
FokI GGATG 1 cut(s) 716
FriOI GRGCYC 1 cut(s) 268
Fsp4HI GCNGC 6 cut(s) 152, 181, 186, 189, 549, 854
FspBI CTAG 1 cut(s) 12
GlaI GCGC 3 cut(s) 184, 422, 868
GluI GCNGC 6 cut(s) 152, 181, 186, 189, 549, 854
HaeII RGCGCY 2 cut(s) 186, 870
HaeIII GGCC 2 cut(s) 255, 362
HapII CCGG 2 cut(s) 252, 538
HgaI GACGC 1 cut(s) 49
HhaI GCGC 3 cut(s) 185, 423, 869
Hin1I GRCGYC 1 cut(s) 60
Hin1II CATG 2 cut(s) 159, 175
Hin6I GCGC 3 cut(s) 183, 421, 867
HinP1I GCGC 3 cut(s) 183, 421, 867
HindIII AAGCTT 2 cut(s) 456, 645
HinfI GANTC 2 cut(s) 48, 593
HpaII CCGG 2 cut(s) 252, 538
HphI GGTGA 1 cut(s) 577
Hpy166II GTNNAC 4 cut(s) 43, 475, 637, 954
Hpy188I TCNGA 5 cut(s) 442, 652, 751, 781, 850
Hpy188III TCNNGA 3 cut(s) 269, 520, 597
Hpy8I GTNNAC 4 cut(s) 43, 475, 637, 954
Hpy99I CGWCG 1 cut(s) 215
HpyAV CCTTC 4 cut(s) 274, 301, 562, 812
HpyCH4III ACNGT 4 cut(s) 211, 373, 575, 796
HpyCH4IV ACGT 1 cut(s) 811
HpyCH4V TGCA 4 cut(s) 137, 175, 188, 275
HpyF10VI GCNNNNNNNGC 5 cut(s) 32, 272, 281, 587, 689
HpyF3I CTNAG 5 cut(s) 110, 441, 595, 699, 849
HpySE526I ACGT 1 cut(s) 811
Hsp92I GRCGYC 1 cut(s) 60
Hsp92II CATG 2 cut(s) 159, 175
HspAI GCGC 3 cut(s) 183, 421, 867
KroI GCCGGC 1 cut(s) 251
KroNI GCCGGC 1 cut(s) 253
Kzo9I GATC 2 cut(s) 599, 664
LmnI GCTCC 5 cut(s) 32, 220, 391, 497, 675
Lsp1109I GCAGC 4 cut(s) 172, 200, 560, 840
LweI GCATC 4 cut(s) 262, 446, 679, 934
MaeI CTAG 1 cut(s) 12
MaeII ACGT 1 cut(s) 811
MalI GATC 2 cut(s) 601, 666
MboI GATC 2 cut(s) 599, 664
MboII GAAGA 5 cut(s) 83, 207, 595, 740, 752
MfeI CAATTG 2 cut(s) 36, 920
MflI RGATCY 1 cut(s) 599
MhlI GDGCHC 2 cut(s) 268, 628
MluCI AATT 5 cut(s) 36, 138, 411, 614, 920
MlyI GAGTC 2 cut(s) 57, 587
MnlI CCTC 9 cut(s) 76, 228, 472, 508, 553, 694, 808, 868, 880
MroNI GCCGGC 1 cut(s) 251
MseI TTAA 1 cut(s) 429
MslI CAYNNNNRTG 1 cut(s) 99
MspA1I CMGCKG 1 cut(s) 551
MspI CCGG 2 cut(s) 252, 538
MspR9I CCNGG 1 cut(s) 365
MunI CAATTG 2 cut(s) 36, 920
MvaI CCWGG 1 cut(s) 365
MwoI GCNNNNNNNGC 5 cut(s) 32, 272, 281, 587, 689
NaeI GCCGGC 1 cut(s) 253
NcoI CCATGG 1 cut(s) 155
NdeI CATATG 1 cut(s) 203
NdeII GATC 2 cut(s) 599, 664
NgoMIV GCCGGC 1 cut(s) 251
NlaIII CATG 2 cut(s) 159, 175
NspI RCATGY 1 cut(s) 175
PdiI GCCGGC 1 cut(s) 253
PinAI ACCGGT 1 cut(s) 537
PkrI GCNGC 6 cut(s) 153, 182, 187, 190, 550, 855
PleI GAGTC 2 cut(s) 56, 587
PpsI GAGTC 2 cut(s) 56, 587
Ppu21I YACGTR 1 cut(s) 812
Psp6I CCWGG 1 cut(s) 363
PspGI CCWGG 1 cut(s) 363
PspPI GGNCC 4 cut(s) 207, 338, 361, 958
PstI CTGCAG 1 cut(s) 190
PstNI CAGNNNCTG 1 cut(s) 602
PsuI RGATCY 1 cut(s) 599
RsaI GTAC 3 cut(s) 16, 402, 798
RsaNI GTAC 3 cut(s) 15, 401, 797
RseI CAYNNNNRTG 1 cut(s) 99
SaqAI TTAA 1 cut(s) 429
SatI GCNGC 6 cut(s) 152, 181, 186, 189, 549, 854
Sau3AI GATC 2 cut(s) 599, 664
Sau96I GGNCC 4 cut(s) 207, 338, 361, 958
ScaI AGTACT 1 cut(s) 798
SchI GAGTC 2 cut(s) 57, 587
ScrFI CCNGG 1 cut(s) 365
SduI GDGCHC 2 cut(s) 268, 628
SfaNI GCATC 4 cut(s) 262, 446, 679, 934
SfcI CTRYAG 1 cut(s) 186
SinI GGWCC 3 cut(s) 207, 338, 958
SmiMI CAYNNNNRTG 1 cut(s) 99
SmlI CTYRAG 1 cut(s) 267
SmoI CTYRAG 1 cut(s) 267
Sse9I AATT 5 cut(s) 36, 138, 411, 614, 920
SsiI CCGC 5 cut(s) 152, 180, 336, 551, 716
SspMI CTAG 1 cut(s) 12
StyD4I CCNGG 1 cut(s) 363
StyI CCWWGG 4 cut(s) 84, 155, 387, 405
TaaI ACNGT 4 cut(s) 211, 373, 575, 796
TaiI ACGT 1 cut(s) 814
TaqI TCGA 3 cut(s) 164, 417, 513
TasI AATT 5 cut(s) 36, 138, 411, 614, 920
TatI WGTACW 2 cut(s) 14, 796
TauI GCSGC 2 cut(s) 154, 183
Tru1I TTAA 1 cut(s) 429
Tru9I TTAA 1 cut(s) 429
TscAI CASTG 1 cut(s) 101
TseI GCWGC 4 cut(s) 185, 188, 548, 853
TspDTI ATGAA 3 cut(s) 120, 132, 741
TspGWI ACGGA 1 cut(s) 851
TspRI CASTG 1 cut(s) 101
VpaK11BI GGWCC 3 cut(s) 207, 338, 958
XapI RAATTY 1 cut(s) 614
XceI RCATGY 1 cut(s) 175
XmiI GTMKAC 2 cut(s) 474, 953
XspI CTAG 1 cut(s) 12
ZrmI AGTACT 1 cut(s) 798
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.