Rh6BG440800

transcriptional regulatory protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0015073
Physical Location & Seq
Forward (+)
65854601 .. 65857260
2660 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG440800.1

Sequence Viewer

Length: 747 bp
ATGGGTAGACGTTCCAGCAAGATCGCTGGCCGAAAGGGGGCGAAGGATGCGAAGAAGGCAAAGCTGTATTCGAAGATTGGGAAGGAACTTGTGTCTGCTTTGAAGAAGGGTGGTCCAAATCCTGTTTCGAATACAGCCCTGGCTACAATATTGGAGAAAGCCAAGGAGCTTGATGTACCCAAGGAGATCTTGGATCGCAACATTAAGAAAGCTTCTGAGAAGGGACAAGAAGCTTACATTGAGAAAGTATATGAGGTATATGGTTATGGTGGAGCTAGCATGGTAGTCGAGGTATTGACAGATAAAATAACCCGATCTGTGGCAACTGTTAGAGAGGTTGTGAAGAACTGTGGCGGGAAGATGGCAGATCCAGGATCTGTTCTGTTCAAATTCAGGCGTGCTCGGGTTGTAAACATAAAAGTTTCAGATGCTGACAAAGATCAGCTCATCTCCATTGCTTTAGATGCCGGTGCTGAGGATGTTATTGAACCGCCAGTATATGAAGATGATACCGAAGAAGATCAATCAGAAAGCTATTATAAGATCGTGAGTGACTCAGATAACTACTCAGCAATACTTTCAAAGTTACGTGACGAAGGAATCAATTTTGAGACAGATAATGGTTCTGAGCTACTTCCAATAAGCCCTATTGAGGTAGATGACGAGGCTATGGATTTGAACAAGGAACTTATGACCAATTTACTTGAACTTGATGATGTTGATGCCGTTTACACAGACCAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transcrip_reg

Protein Analysis

248

Amino Acids

27.26

Weight (kDa)

4.84

Isoelectric Point (pI)

37.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TACO1_YebC_N PF20772 4 - 73 2e-22 TACO1/YebC protein N-terminal domain
Transcrip_reg PF01709 79 - 246 7.5e-37 TACO1/YebC second and third domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015073)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25830
fragaria_vesca FvH4_2g35600 FvH4_2g35600
malus_domestica MD08G1113700.v1.1
prunus_persica Prupe.1G448300_v2.0.a1
pyrus_communis pycom08g09440
rosa_chinensis RchiOBHm_Chr6g0306211
rosa_laevigata RLG00000010813
rosa_multiflora Rmu_sc0003594.1_g000003
rosa_roxburghii Rroxscaffold_7G00161930
rosa_rugosa Rorug06G0348100
rosa_samantha Rh6AG460600 Rh6BG440800 Rh6CG474600 Rh6DG460900
rosa_wichuraiana Rw6G040120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 540
AccI GTMKAC 1 cut(s) 7
AciI CCGC 2 cut(s) 354, 491
AclWI GGATC 3 cut(s) 201, 362, 382
AcoI YGGCCR 1 cut(s) 28
AcsI RAATTY 1 cut(s) 389
AfaI GTAC 1 cut(s) 177
AfiI CCNNNNNNNGG 3 cut(s) 37, 319, 652
AgsI TTSAA 6 cut(s) 103, 388, 488, 582, 679, 707
AjnI CCWGG 2 cut(s) 138, 370
AjuI GAANNNNNNNTTGG 2 cut(s) 109, 141
AluBI AGCT 8 cut(s) 64, 169, 212, 233, 275, 445, 534, 631
AluI AGCT 8 cut(s) 64, 169, 212, 233, 275, 445, 534, 631
Alw21I GWGCWC 1 cut(s) 403
Alw26I GTCTC 1 cut(s) 605
AlwI GGATC 3 cut(s) 201, 362, 382
AlwNI CAGNNNCTG 2 cut(s) 377, 431
Ama87I CYCGRG 1 cut(s) 402
AoxI GGCC 1 cut(s) 28
ApoI RAATTY 1 cut(s) 389
AspS9I GGNCC 1 cut(s) 113
AsuII TTCGAA 2 cut(s) 71, 128
AsuNHI GCTAGC 1 cut(s) 275
AvaI CYCGRG 1 cut(s) 402
AvaII GGWCC 1 cut(s) 113
Bbv12I GWGCWC 1 cut(s) 403
BbvCI CCTCAGC 1 cut(s) 474
BccI CCATC 1 cut(s) 355
BceAI ACGGC 1 cut(s) 710
BcgI CGANNNNNNTGC 2 cut(s) 268, 302
BciT130I CCWGG 2 cut(s) 140, 372
BcoDI GTCTC 1 cut(s) 605
BfaI CTAG 1 cut(s) 276
BglII AGATCT 1 cut(s) 186
Bme1390I CCNGG 2 cut(s) 140, 372
Bme18I GGWCC 1 cut(s) 113
BmeT110I CYCGRG 1 cut(s) 402
BmgT120I GGNCC 1 cut(s) 113
BmrFI CCNGG 2 cut(s) 140, 372
BmsI GCATC 4 cut(s) 37, 418, 454, 712
BmtI GCTAGC 1 cut(s) 279
Bpu10I CCTNAGC 1 cut(s) 474
Bpu14I TTCGAA 2 cut(s) 71, 128
BsaAI YACGTR 1 cut(s) 590
BsaJI CCNNGG 3 cut(s) 138, 162, 180
Bsc4I CCNNNNNNNGG 3 cut(s) 37, 319, 652
Bse118I RCCGGY 1 cut(s) 467
Bse1I ACTGG 1 cut(s) 494
Bse3DI GCAATG 1 cut(s) 453
BseBI CCWGG 2 cut(s) 140, 372
BseDI CCNNGG 3 cut(s) 138, 162, 180
BseGI GGATG 2 cut(s) 52, 484
BseLI CCNNNNNNNGG 3 cut(s) 37, 319, 652
BseMI GCAATG 1 cut(s) 453
BseMII CTCAG 5 cut(s) 207, 465, 570, 582, 618
BseNI ACTGG 1 cut(s) 494
BshFI GGCC 1 cut(s) 30
BsiHKAI GWGCWC 1 cut(s) 403
BsiHKCI CYCGRG 1 cut(s) 402
BsiSI CCGG 1 cut(s) 468
BslFI GGGAC 1 cut(s) 237
BslI CCNNNNNNNGG 3 cut(s) 37, 319, 652
BsmAI GTCTC 1 cut(s) 605
BsmFI GGGAC 1 cut(s) 237
BsnI GGCC 1 cut(s) 30
BsoBI CYCGRG 1 cut(s) 402
Bsp119I TTCGAA 2 cut(s) 71, 128
Bsp1286I GDGCHC 1 cut(s) 403
Bsp143I GATC 9 cut(s) 21, 186, 193, 314, 367, 374, 439, 520, 543
BspACI CCGC 2 cut(s) 354, 491
BspANI GGCC 1 cut(s) 30
BspCNI CTCAG 5 cut(s) 208, 466, 569, 581, 619
BspOI GCTAGC 1 cut(s) 279
BspPI GGATC 3 cut(s) 201, 362, 382
BspT104I TTCGAA 2 cut(s) 71, 128
BsrDI GCAATG 1 cut(s) 453
BsrFI RCCGGY 1 cut(s) 467
BsrI ACTGG 1 cut(s) 494
BssAI RCCGGY 1 cut(s) 467
BssECI CCNNGG 3 cut(s) 138, 162, 180
BssMI GATC 9 cut(s) 21, 186, 193, 314, 367, 374, 439, 520, 543
BssT1I CCWWGG 2 cut(s) 162, 180
Bst2UI CCWGG 2 cut(s) 140, 372
Bst4CI ACNGT 2 cut(s) 328, 350
BstBAI YACGTR 1 cut(s) 590
BstBI TTCGAA 2 cut(s) 71, 128
BstC8I GCNNGC 3 cut(s) 28, 277, 399
BstDEI CTNAG 5 cut(s) 216, 474, 556, 568, 627
BstF5I GGATG 2 cut(s) 52, 484
BstKTI GATC 9 cut(s) 24, 189, 196, 317, 370, 377, 442, 523, 546
BstMAI GTCTC 1 cut(s) 605
BstMBI GATC 9 cut(s) 21, 186, 193, 314, 367, 374, 439, 520, 543
BstMWI GCNNNNNNNGC 3 cut(s) 47, 56, 464
BstNI CCWGG 2 cut(s) 140, 372
BstSCI CCNGG 2 cut(s) 138, 370
BstX2I RGATCY 3 cut(s) 186, 367, 374
BstYI RGATCY 3 cut(s) 186, 367, 374
BsuRI GGCC 1 cut(s) 30
BtsCI GGATG 2 cut(s) 52, 484
Cac8I GCNNGC 3 cut(s) 28, 277, 399
CaiI CAGNNNCTG 2 cut(s) 377, 431
Cfr10I RCCGGY 1 cut(s) 467
Cfr13I GGNCC 1 cut(s) 113
Csp6I GTAC 1 cut(s) 176
CviAII CATG 1 cut(s) 280
CviQI GTAC 1 cut(s) 176
DdeI CTNAG 5 cut(s) 216, 474, 556, 568, 627
DpnI GATC 9 cut(s) 23, 188, 195, 316, 369, 376, 441, 522, 545
DpnII GATC 9 cut(s) 21, 186, 193, 314, 367, 374, 439, 520, 543
EaeI YGGCCR 1 cut(s) 28
Eco130I CCWWGG 2 cut(s) 162, 180
Eco47I GGWCC 1 cut(s) 113
Eco88I CYCGRG 1 cut(s) 402
EcoRII CCWGG 2 cut(s) 138, 370
EcoT14I CCWWGG 2 cut(s) 162, 180
ErhI CCWWGG 2 cut(s) 162, 180
FaeI CATG 1 cut(s) 283
FalI AAGNNNNNCTT 2 cut(s) 173, 205
FaqI GGGAC 1 cut(s) 237
FatI CATG 1 cut(s) 279
FauI CCCGC 1 cut(s) 347
FblI GTMKAC 1 cut(s) 7
FokI GGATG 2 cut(s) 59, 491
FspBI CTAG 1 cut(s) 276
HaeIII GGCC 1 cut(s) 30
HapII CCGG 1 cut(s) 468
Hin1II CATG 1 cut(s) 283
HindIII AAGCTT 2 cut(s) 210, 231
HinfI GANTC 2 cut(s) 554, 600
HpaII CCGG 1 cut(s) 468
Hpy166II GTNNAC 3 cut(s) 8, 412, 730
Hpy188I TCNGA 5 cut(s) 217, 427, 529, 559, 628
Hpy188III TCNNGA 1 cut(s) 547
Hpy8I GTNNAC 3 cut(s) 8, 412, 730
HpyAV CCTTC 6 cut(s) 37, 49, 76, 100, 214, 590
HpyCH4III ACNGT 2 cut(s) 328, 350
HpyCH4IV ACGT 2 cut(s) 10, 589
HpyF10VI GCNNNNNNNGC 3 cut(s) 47, 56, 464
HpyF3I CTNAG 5 cut(s) 216, 474, 556, 568, 627
HpySE526I ACGT 2 cut(s) 10, 589
Hsp92II CATG 1 cut(s) 283
Kzo9I GATC 9 cut(s) 21, 186, 193, 314, 367, 374, 439, 520, 543
LmnI GCTCC 2 cut(s) 166, 272
LweI GCATC 4 cut(s) 37, 418, 454, 712
MaeI CTAG 1 cut(s) 276
MaeII ACGT 2 cut(s) 10, 589
MaeIII GTNAC 3 cut(s) 551, 585, 590
MalI GATC 9 cut(s) 23, 188, 195, 316, 369, 376, 441, 522, 545
MboI GATC 9 cut(s) 21, 186, 193, 314, 367, 374, 439, 520, 543
MboII GAAGA 8 cut(s) 64, 85, 115, 355, 370, 515, 527, 530
MflI RGATCY 3 cut(s) 186, 367, 374
MhlI GDGCHC 1 cut(s) 403
MluCI AATT 3 cut(s) 389, 604, 697
MlyI GAGTC 1 cut(s) 548
MnlI CCTC 6 cut(s) 247, 283, 328, 469, 646, 658
MseI TTAA 1 cut(s) 204
MspI CCGG 1 cut(s) 468
MspR9I CCNGG 2 cut(s) 140, 372
MvaI CCWGG 2 cut(s) 140, 372
MwoI GCNNNNNNNGC 3 cut(s) 47, 56, 464
NdeII GATC 9 cut(s) 21, 186, 193, 314, 367, 374, 439, 520, 543
NheI GCTAGC 1 cut(s) 275
NlaIII CATG 1 cut(s) 283
NmuCI GTSAC 2 cut(s) 551, 590
NspV TTCGAA 2 cut(s) 71, 128
PfeI GAWTC 1 cut(s) 600
PfoI TCCNGGA 1 cut(s) 370
PleI GAGTC 1 cut(s) 548
PpsI GAGTC 1 cut(s) 548
Ppu21I YACGTR 1 cut(s) 590
PsiI TTATAA 1 cut(s) 540
Psp6I CCWGG 2 cut(s) 138, 370
PspGI CCWGG 2 cut(s) 138, 370
PspPI GGNCC 1 cut(s) 113
PstNI CAGNNNCTG 2 cut(s) 377, 431
PsuI RGATCY 3 cut(s) 186, 367, 374
RsaI GTAC 1 cut(s) 177
RsaNI GTAC 1 cut(s) 176
SaqAI TTAA 1 cut(s) 204
Sau3AI GATC 9 cut(s) 21, 186, 193, 314, 367, 374, 439, 520, 543
Sau96I GGNCC 1 cut(s) 113
SchI GAGTC 1 cut(s) 548
ScrFI CCNGG 2 cut(s) 140, 372
SduI GDGCHC 1 cut(s) 403
SfaNI GCATC 4 cut(s) 37, 418, 454, 712
SfuI TTCGAA 2 cut(s) 71, 128
SinI GGWCC 1 cut(s) 113
Sse9I AATT 3 cut(s) 389, 604, 697
SsiI CCGC 2 cut(s) 354, 491
SspI AATATT 1 cut(s) 150
SspMI CTAG 1 cut(s) 276
StyD4I CCNGG 2 cut(s) 138, 370
StyI CCWWGG 2 cut(s) 162, 180
TaaI ACNGT 2 cut(s) 328, 350
TaiI ACGT 2 cut(s) 13, 592
TaqI TCGA 3 cut(s) 71, 128, 288
TasI AATT 3 cut(s) 389, 604, 697
TfiI GAWTC 1 cut(s) 600
Tru1I TTAA 1 cut(s) 204
Tru9I TTAA 1 cut(s) 204
TseFI GTSAC 2 cut(s) 551, 590
Tsp45I GTSAC 2 cut(s) 551, 590
TspDTI ATGAA 1 cut(s) 516
VpaK11BI GGWCC 1 cut(s) 113
XapI RAATTY 1 cut(s) 389
XcmI CCANNNNNNNNNTGG 1 cut(s) 187
XmiI GTMKAC 1 cut(s) 7
XspI CTAG 1 cut(s) 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.