Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0015073

Physical Location & Seq

Genomic Coordinates Reverse (-)

64353919 .. 64355910

Gene Structure 1992 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG460600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGGGTCATCTTGTACAACCAGAGCTTTAGGTTCAATCCTTCATAGATTCACCACCGGTGTCTCTTCCAAATGCCCCAACGGCTCAGCCAGGACTGGTTTGCTGAGTAGAAACTTATCATCTTCATCTTCCATTTCACCATTGCCTTTTTCATGGATTTCGACGCCTATAGGAAGCAGTCCCGGAGCGAGGAGAACCATACGTACCGTCTCTCCTCTCTGCATGGGTAGACGTTCCAGCAAGATCGCTGGTCGAAAGGGGGCGAAGGATGCGAAGAAGGCAAAGCTGTATTCGAAGATTGGGAAGGAACTTGTGTCTGCTTTGAAGAAGGGTGGTCCAAATCCTGTTTCGAATACAGCCCTGGCTACAATATTGGAGAAAGCCAAGGAGCTTGATGTACCCAAGGAGATCTTGGATCGCAACATTAAGAAAGCTTCTGAGAAGGGACAAGAAGCTTACATTGAGAAAGTATATGAGGTATATGGTTATGGTGGAGCTAGCATGGTAGTCGAGGTATTGACAGATAAAATAACCCGATCTGTGGCAACTGTTAGAGAGGTTGTGAAGAACTGTGGCGGGAAGATGGCAGATCCAGGATCTGTTCTGTTCAAATTCAGGCGTGCTCGGGTTGTAAACATAAAAGTCTCAGATGCTGACAAAGATCAGCTCATCTCCATTGCTTTAGATGCCGGTGCTGAGGATGTTATTGAACCGCCAGTATATGAAGATGATACCGAAGAAGATCAATCAGAAAGCTATTATAAGATAGTGAGTGACTCAGATAACTACTCAGCAATACTTTCAAAGTTACGTGACGAAGGAATCAATTTTGAGACAGATAATGGTTCTGAGCTACTTCCAATAAGCCCTATTGAGGTAGATGACGAGGCTATGGATTTGAACAAGGAACTTATGACCAATTTACTTGAACTTGATGATGTTGATGCCGTTTACACAGACCAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transcrip_reg

Protein Analysis

322

Amino Acids

34.9

Weight (kDa)

5.79

Isoelectric Point (pI)

46.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TACO1_YebC_N	PF20772	78 - 147	3.2e-22	TACO1/YebC protein N-terminal domain
Transcrip_reg	PF01709	153 - 320	1.6e-36	TACO1/YebC second and third domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015073)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25830
fragaria_vesca	FvH4_2g35600 FvH4_2g35600
malus_domestica	MD08G1113700.v1.1
prunus_persica	Prupe.1G448300_v2.0.a1
pyrus_communis	pycom08g09440
rosa_chinensis	RchiOBHm_Chr6g0306211
rosa_laevigata	RLG00000010813
rosa_multiflora	Rmu_sc0003594.1_g000003
rosa_roxburghii	Rroxscaffold_7G00161930
rosa_rugosa	Rorug06G0348100
rosa_samantha	Rh6AG460600 Rh6BG440800 Rh6CG474600 Rh6DG460900
rosa_wichuraiana	Rw6G040120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	762
AccI	GTMKAC	1 cut(s)	229
AciI	CCGC	2 cut(s)	576, 713
AclWI	GGATC	3 cut(s)	423, 584, 604
AcsI	RAATTY	1 cut(s)	611
AcyI	GRCGYC	1 cut(s)	164
AfaI	GTAC	3 cut(s)	16, 205, 399
AfiI	CCNNNNNNNGG	3 cut(s)	189, 541, 874
AgeI	ACCGGT	1 cut(s)	56
AgsI	TTSAA	7 cut(s)	36, 325, 610, 710, 804, 901, 929
AjnI	CCWGG	3 cut(s)	89, 360, 592
AjuI	GAANNNNNNNTTGG	2 cut(s)	331, 363
AluBI	AGCT	9 cut(s)	26, 286, 391, 434, 455, 497, 667, 756, 853
AluI	AGCT	9 cut(s)	26, 286, 391, 434, 455, 497, 667, 756, 853
Alw21I	GWGCWC	1 cut(s)	625
Alw26I	GTCTC	4 cut(s)	67, 214, 649, 827
AlwI	GGATC	3 cut(s)	423, 584, 604
AlwNI	CAGNNNCTG	2 cut(s)	599, 653
Ama87I	CYCGRG	1 cut(s)	624
ApoI	RAATTY	1 cut(s)	611
AsiGI	ACCGGT	1 cut(s)	56
AspS9I	GGNCC	1 cut(s)	335
AsuC2I	CCSGG	1 cut(s)	183
AsuHPI	GGTGA	2 cut(s)	43, 129
AsuII	TTCGAA	2 cut(s)	293, 350
AsuNHI	GCTAGC	1 cut(s)	497
AvaI	CYCGRG	1 cut(s)	624
AvaII	GGWCC	1 cut(s)	335
Bbv12I	GWGCWC	1 cut(s)	625
BbvCI	CCTCAGC	1 cut(s)	696
BccI	CCATC	1 cut(s)	577
BceAI	ACGGC	2 cut(s)	97, 932
BcgI	CGANNNNNNTGC	2 cut(s)	490, 524
BciT130I	CCWGG	3 cut(s)	91, 362, 594
BcnI	CCSGG	1 cut(s)	183
BcoDI	GTCTC	4 cut(s)	67, 214, 649, 827
BfaI	CTAG	1 cut(s)	498
BfmI	CTRYAG	1 cut(s)	168
BglI	GCCNNNNNGGC	1 cut(s)	81
BglII	AGATCT	1 cut(s)	408
BlpI	GCTNAGC	1 cut(s)	85
Bme1390I	CCNGG	4 cut(s)	91, 183, 362, 594
Bme18I	GGWCC	1 cut(s)	335
BmeT110I	CYCGRG	1 cut(s)	624
BmgT120I	GGNCC	1 cut(s)	335
BmrFI	CCNGG	4 cut(s)	91, 183, 362, 594
BmsI	GCATC	4 cut(s)	259, 640, 676, 934
BmtI	GCTAGC	1 cut(s)	501
Bpu10I	CCTNAGC	1 cut(s)	696
Bpu1102I	GCTNAGC	1 cut(s)	85
Bpu14I	TTCGAA	2 cut(s)	293, 350
BpuMI	CCSGG	1 cut(s)	183
BsaAI	YACGTR	2 cut(s)	203, 812
BsaHI	GRCGYC	1 cut(s)	164
BsaJI	CCNNGG	3 cut(s)	360, 384, 402
BsaWI	WCCGGW	1 cut(s)	56
BsaXI	ACNNNNNCTCC	2 cut(s)	196, 226
Bsc4I	CCNNNNNNNGG	3 cut(s)	189, 541, 874
Bse118I	RCCGGY	2 cut(s)	56, 689
Bse1I	ACTGG	2 cut(s)	100, 716
Bse3DI	GCAATG	2 cut(s)	140, 675
BseBI	CCWGG	3 cut(s)	91, 362, 594
BseDI	CCNNGG	3 cut(s)	360, 384, 402
BseGI	GGATG	2 cut(s)	274, 706
BseLI	CCNNNNNNNGG	3 cut(s)	189, 541, 874
BseMI	GCAATG	2 cut(s)	140, 675
BseMII	CTCAG	8 cut(s)	95, 99, 429, 660, 687, 792, 804, 840
BseNI	ACTGG	2 cut(s)	100, 716
BseRI	GAGGAG	2 cut(s)	204, 205
BshTI	ACCGGT	1 cut(s)	56
BsiHKAI	GWGCWC	1 cut(s)	625
BsiHKCI	CYCGRG	1 cut(s)	624
BsiSI	CCGG	3 cut(s)	57, 183, 690
BslFI	GGGAC	2 cut(s)	165, 459
BslI	CCNNNNNNNGG	3 cut(s)	189, 541, 874
BsmAI	GTCTC	4 cut(s)	67, 214, 649, 827
BsmBI	CGTCTC	1 cut(s)	214
BsmFI	GGGAC	2 cut(s)	165, 459
BsoBI	CYCGRG	1 cut(s)	624
Bsp119I	TTCGAA	2 cut(s)	293, 350
Bsp1286I	GDGCHC	1 cut(s)	625
Bsp1407I	TGTACA	1 cut(s)	14
Bsp143I	GATC	8 cut(s)	243, 408, 415, 536, 589, 596, 661, 742
Bsp1720I	GCTNAGC	1 cut(s)	85
BspACI	CCGC	2 cut(s)	576, 713
BspCNI	CTCAG	8 cut(s)	96, 98, 430, 659, 688, 791, 803, 841
BspOI	GCTAGC	1 cut(s)	501
BspPI	GGATC	3 cut(s)	423, 584, 604
BspT104I	TTCGAA	2 cut(s)	293, 350
BsrDI	GCAATG	2 cut(s)	140, 675
BsrFI	RCCGGY	2 cut(s)	56, 689
BsrGI	TGTACA	1 cut(s)	14
BsrI	ACTGG	2 cut(s)	100, 716
BssAI	RCCGGY	2 cut(s)	56, 689
BssECI	CCNNGG	3 cut(s)	360, 384, 402
BssMI	GATC	8 cut(s)	243, 408, 415, 536, 589, 596, 661, 742
BssNI	GRCGYC	1 cut(s)	164
BssT1I	CCWWGG	2 cut(s)	384, 402
Bst2UI	CCWGG	3 cut(s)	91, 362, 594
Bst4CI	ACNGT	3 cut(s)	208, 550, 572
Bst6I	CTCTTC	1 cut(s)	70
BstACI	GRCGYC	1 cut(s)	164
BstAUI	TGTACA	1 cut(s)	14
BstBAI	YACGTR	2 cut(s)	203, 812
BstBI	TTCGAA	2 cut(s)	293, 350
BstC8I	GCNNGC	2 cut(s)	499, 621
BstDEI	CTNAG	8 cut(s)	85, 104, 438, 646, 696, 778, 790, 849
BstF5I	GGATG	2 cut(s)	274, 706
BstKTI	GATC	8 cut(s)	246, 411, 418, 539, 592, 599, 664, 745
BstMAI	GTCTC	4 cut(s)	67, 214, 649, 827
BstMBI	GATC	8 cut(s)	243, 408, 415, 536, 589, 596, 661, 742
BstMWI	GCNNNNNNNGC	4 cut(s)	81, 269, 278, 686
BstNI	CCWGG	3 cut(s)	91, 362, 594
BstSCI	CCNGG	4 cut(s)	89, 181, 360, 592
BstSFI	CTRYAG	1 cut(s)	168
BstSNI	TACGTA	1 cut(s)	203
BstX2I	RGATCY	3 cut(s)	408, 589, 596
BstYI	RGATCY	3 cut(s)	408, 589, 596
BtsCI	GGATG	2 cut(s)	274, 706
Cac8I	GCNNGC	2 cut(s)	499, 621
CaiI	CAGNNNCTG	2 cut(s)	599, 653
Cfr10I	RCCGGY	2 cut(s)	56, 689
Cfr13I	GGNCC	1 cut(s)	335
CseI	GACGC	1 cut(s)	172
Csp6I	GTAC	3 cut(s)	15, 204, 398
CspAI	ACCGGT	1 cut(s)	56
CviAII	CATG	3 cut(s)	153, 223, 502
CviQI	GTAC	3 cut(s)	15, 204, 398
DdeI	CTNAG	8 cut(s)	85, 104, 438, 646, 696, 778, 790, 849
DpnI	GATC	8 cut(s)	245, 410, 417, 538, 591, 598, 663, 744
DpnII	GATC	8 cut(s)	243, 408, 415, 536, 589, 596, 661, 742
Eam1104I	CTCTTC	1 cut(s)	70
EarI	CTCTTC	1 cut(s)	70
Eco105I	TACGTA	1 cut(s)	203
Eco130I	CCWWGG	2 cut(s)	384, 402
Eco47I	GGWCC	1 cut(s)	335
Eco88I	CYCGRG	1 cut(s)	624
EcoRII	CCWGG	3 cut(s)	89, 360, 592
EcoT14I	CCWWGG	2 cut(s)	384, 402
ErhI	CCWWGG	2 cut(s)	384, 402
Esp3I	CGTCTC	1 cut(s)	214
FaeI	CATG	3 cut(s)	156, 226, 505
FalI	AAGNNNNNCTT	2 cut(s)	395, 427
FaqI	GGGAC	2 cut(s)	165, 459
FatI	CATG	3 cut(s)	152, 222, 501
FauI	CCCGC	1 cut(s)	569
FblI	GTMKAC	1 cut(s)	229
FokI	GGATG	2 cut(s)	281, 713
FspBI	CTAG	1 cut(s)	498
HapII	CCGG	3 cut(s)	57, 183, 690
HgaI	GACGC	1 cut(s)	172
Hin1I	GRCGYC	1 cut(s)	164
Hin1II	CATG	3 cut(s)	156, 226, 505
HindIII	AAGCTT	2 cut(s)	432, 453
HinfI	GANTC	3 cut(s)	48, 776, 822
HpaII	CCGG	3 cut(s)	57, 183, 690
HphI	GGTGA	2 cut(s)	43, 129
Hpy166II	GTNNAC	3 cut(s)	230, 634, 952
Hpy188I	TCNGA	5 cut(s)	439, 649, 751, 781, 850
Hpy8I	GTNNAC	3 cut(s)	230, 634, 952
Hpy99I	CGWCG	1 cut(s)	166
HpyAV	CCTTC	7 cut(s)	50, 259, 271, 298, 322, 436, 812
HpyCH4III	ACNGT	3 cut(s)	208, 550, 572
HpyCH4IV	ACGT	3 cut(s)	202, 232, 811
HpyCH4V	TGCA	1 cut(s)	222
HpyF10VI	GCNNNNNNNGC	4 cut(s)	81, 269, 278, 686
HpyF3I	CTNAG	8 cut(s)	85, 104, 438, 646, 696, 778, 790, 849
HpySE526I	ACGT	3 cut(s)	202, 232, 811
Hsp92I	GRCGYC	1 cut(s)	164
Hsp92II	CATG	3 cut(s)	156, 226, 505
Kzo9I	GATC	8 cut(s)	243, 408, 415, 536, 589, 596, 661, 742
LmnI	GCTCC	3 cut(s)	185, 388, 494
LweI	GCATC	4 cut(s)	259, 640, 676, 934
MaeI	CTAG	1 cut(s)	498
MaeII	ACGT	3 cut(s)	202, 232, 811
MaeIII	GTNAC	3 cut(s)	773, 807, 812
MalI	GATC	8 cut(s)	245, 410, 417, 538, 591, 598, 663, 744
MboI	GATC	8 cut(s)	243, 408, 415, 536, 589, 596, 661, 742
MflI	RGATCY	3 cut(s)	408, 589, 596
MhlI	GDGCHC	1 cut(s)	625
MluCI	AATT	3 cut(s)	611, 826, 919
MlyI	GAGTC	1 cut(s)	770
MnlI	CCTC	8 cut(s)	183, 225, 469, 505, 550, 691, 868, 880
MseI	TTAA	1 cut(s)	426
MspI	CCGG	3 cut(s)	57, 183, 690
MspR9I	CCNGG	4 cut(s)	91, 183, 362, 594
MvaI	CCWGG	3 cut(s)	91, 362, 594
MwoI	GCNNNNNNNGC	4 cut(s)	81, 269, 278, 686
NciI	CCSGG	1 cut(s)	183
NdeII	GATC	8 cut(s)	243, 408, 415, 536, 589, 596, 661, 742
NheI	GCTAGC	1 cut(s)	497
NlaIII	CATG	3 cut(s)	156, 226, 505
NmuCI	GTSAC	2 cut(s)	773, 812
NspV	TTCGAA	2 cut(s)	293, 350
PfeI	GAWTC	2 cut(s)	48, 822
PfoI	TCCNGGA	2 cut(s)	181, 592
PinAI	ACCGGT	1 cut(s)	56
PleI	GAGTC	1 cut(s)	770
PpsI	GAGTC	1 cut(s)	770
Ppu21I	YACGTR	2 cut(s)	203, 812
PsiI	TTATAA	1 cut(s)	762
Psp6I	CCWGG	3 cut(s)	89, 360, 592
PspGI	CCWGG	3 cut(s)	89, 360, 592
PspPI	GGNCC	1 cut(s)	335
PsrI	GAACNNNNNNTAC	2 cut(s)	187, 219
PstNI	CAGNNNCTG	2 cut(s)	599, 653
PsuI	RGATCY	3 cut(s)	408, 589, 596
RsaI	GTAC	3 cut(s)	16, 205, 399
RsaNI	GTAC	3 cut(s)	15, 204, 398
SaqAI	TTAA	1 cut(s)	426
Sau3AI	GATC	8 cut(s)	243, 408, 415, 536, 589, 596, 661, 742
Sau96I	GGNCC	1 cut(s)	335
SchI	GAGTC	1 cut(s)	770
ScrFI	CCNGG	4 cut(s)	91, 183, 362, 594
SduI	GDGCHC	1 cut(s)	625
SfaNI	GCATC	4 cut(s)	259, 640, 676, 934
SfcI	CTRYAG	1 cut(s)	168
SfuI	TTCGAA	2 cut(s)	293, 350
SgrAI	CRCCGGYG	1 cut(s)	56
SinI	GGWCC	1 cut(s)	335
SnaBI	TACGTA	1 cut(s)	203
Sse9I	AATT	3 cut(s)	611, 826, 919
SsiI	CCGC	2 cut(s)	576, 713
SspI	AATATT	1 cut(s)	372
SspMI	CTAG	1 cut(s)	498
StyD4I	CCNGG	4 cut(s)	89, 181, 360, 592
StyI	CCWWGG	2 cut(s)	384, 402
TaaI	ACNGT	3 cut(s)	208, 550, 572
TaiI	ACGT	3 cut(s)	205, 235, 814
TaqI	TCGA	5 cut(s)	161, 253, 293, 350, 510
TasI	AATT	3 cut(s)	611, 826, 919
TatI	WGTACW	1 cut(s)	14
TfiI	GAWTC	2 cut(s)	48, 822
Tru1I	TTAA	1 cut(s)	426
Tru9I	TTAA	1 cut(s)	426
TseFI	GTSAC	2 cut(s)	773, 812
Tsp45I	GTSAC	2 cut(s)	773, 812
TspDTI	ATGAA	4 cut(s)	32, 114, 141, 738
VpaK11BI	GGWCC	1 cut(s)	335
XapI	RAATTY	1 cut(s)	611
XcmI	CCANNNNNNNNNTGG	1 cut(s)	409
XmiI	GTMKAC	1 cut(s)	229
XspI	CTAG	1 cut(s)	498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.