Prupe.1G448300_v2.0.a1

transcriptional regulatory protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0015073
Physical Location & Seq
Forward (+)
37855997 .. 37858489
2493 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G448300.1

Sequence Viewer

Length: 972 bp
ATGGGGTCATCTTGTACATTGAGAGCCTTAGGTGCAATTCTTCACAGATTCACTAATGGGGTCTCCTCCAAATGCCCCAACTCCATGGCTCTTCAGTGGAATGGCCTGCTGAGTAGAAAGTTATCATCTTCATCTTCAATTTCATCATTGCCTTCATGGATTTCGACCCACATACATGGCAGTGCTACTGTGACAAGAACCATATGGACCGTCTCTCCTCTCTCTATGGGCAGACGTTCCAGCAAAATCGCTGGCCGAAAGGGGGCTCAAGATGCAAAGAAGGCAAAGCTGTATGCGAGGATTGGGAAGGAAGTTGTGTCTGCTGTAAAGAAAGGTGGTCCAAGTCCTGTATCAAATACGGCACTAGCTACTGTGCTGGAGAAAGCCAAGGAGCTTGATGTACCCAAGGAAATTTTGGAGCGCAACATTAAGAGAGCATCTGAGAAAGGACAAGAAGCTTACATTGAGAAAGTATACGAGGTATATGGTTTTGGTGGAGCTAGTATGGTAATTGAGGTTTTGACCGACAAAATAAACCGATCTGTGGCAGCGGTTAGAGAGGTGGTGAAGGACTGTGGGGGAAAGATGGCAGATTCGGGATCTGTTTTGTTCAAATTCAGGCGTGCTCGGGTTGTAAACGTAAAAGTTTCAGATGCTGACAAAGATCAACTCCTTTCCATTGCTTTAGATGCTGGTGCTGAGGATGTTATTGAACCGCCAGTATATGAATATGATACTGAAGAAGATATGTCAGAAAGCTATTATAAAATTGTAAGTTCAGCAGAGAACTACTCTACTATACTTTCAAAGCTACGTGATGAAGGAGTTATTTTTGAGACGGATAATGGTTCTGAGCTACTTCCAATAAGCACTATTGAGGTAGATGACGAGGCTTTGGACTTGAACAAGGAACTTATGTCCAAATTACTTGAGCTTGACGATGTTGATGCAGTGTATACTGACCAGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transcrip_reg

Protein Analysis

324

Amino Acids

35.18

Weight (kDa)

5.84

Isoelectric Point (pI)

49.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015073)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25830
fragaria_vesca FvH4_2g35600 FvH4_2g35600
malus_domestica MD08G1113700.v1.1
prunus_persica Prupe.1G448300_v2.0.a1
pyrus_communis pycom08g09440
rosa_chinensis RchiOBHm_Chr6g0306211
rosa_laevigata RLG00000010813
rosa_multiflora Rmu_sc0003594.1_g000003
rosa_roxburghii Rroxscaffold_7G00161930
rosa_rugosa Rorug06G0348100
rosa_samantha Rh6AG460600 Rh6BG440800 Rh6CG474600 Rh6DG460900
rosa_wichuraiana Rw6G040120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 765
AccI GTMKAC 2 cut(s) 474, 956
AciI CCGC 2 cut(s) 551, 716
AclWI GGATC 1 cut(s) 607
AcoI YGGCCR 1 cut(s) 253
AcsI RAATTY 2 cut(s) 411, 614
AcuI CTGAAG 2 cut(s) 77, 759
AfaI GTAC 2 cut(s) 16, 402
AfiI CCNNNNNNNGG 2 cut(s) 262, 544
AgsI TTSAA 5 cut(s) 138, 613, 713, 807, 904
AluBI AGCT 9 cut(s) 289, 368, 394, 458, 500, 759, 811, 856, 934
AluI AGCT 9 cut(s) 289, 368, 394, 458, 500, 759, 811, 856, 934
Alw21I GWGCWC 1 cut(s) 628
Alw26I GTCTC 3 cut(s) 67, 217, 830
AlwI GGATC 1 cut(s) 607
AlwNI CAGNNNCTG 1 cut(s) 656
Ama87I CYCGRG 1 cut(s) 627
AoxI GGCC 2 cut(s) 103, 253
ApeKI GCWGC 1 cut(s) 548
ApoI RAATTY 2 cut(s) 411, 614
AspLEI GCGC 1 cut(s) 423
AspS9I GGNCC 2 cut(s) 207, 338
AsuHPI GGTGA 1 cut(s) 577
AvaI CYCGRG 1 cut(s) 627
AvaII GGWCC 2 cut(s) 207, 338
AxyI CCTNAGG 1 cut(s) 28
BanII GRGCYC 1 cut(s) 268
Bbv12I GWGCWC 1 cut(s) 628
BbvCI CCTCAGC 1 cut(s) 699
BbvI GCAGC 1 cut(s) 560
BccI CCATC 1 cut(s) 580
BceAI ACGGC 1 cut(s) 375
BcgI CGANNNNNNTGC 2 cut(s) 929, 963
BcoDI GTCTC 3 cut(s) 67, 217, 830
BfaI CTAG 2 cut(s) 365, 501
BisI GCNGC 1 cut(s) 549
BlsI GCNGC 1 cut(s) 550
Bme18I GGWCC 2 cut(s) 207, 338
BmeT110I CYCGRG 1 cut(s) 627
BmgT120I GGNCC 2 cut(s) 207, 338
BmsI GCATC 5 cut(s) 262, 446, 643, 679, 937
BplI GAGNNNNNCTC 2 cut(s) 776, 808
BpmI CTGGAG 1 cut(s) 398
Bpu10I CCTNAGC 1 cut(s) 699
BpuEI CTTGAG 2 cut(s) 252, 950
BsaAI YACGTR 1 cut(s) 815
BsaI GGTCTC 1 cut(s) 67
BsaJI CCNNGG 3 cut(s) 84, 387, 405
BsaXI ACNNNNNCTCC 2 cut(s) 199, 229
Bsc4I CCNNNNNNNGG 2 cut(s) 262, 544
Bse1I ACTGG 1 cut(s) 719
Bse21I CCTNAGG 1 cut(s) 28
Bse3DI GCAATG 2 cut(s) 146, 678
BseDI CCNNGG 3 cut(s) 84, 387, 405
BseGI GGATG 1 cut(s) 709
BseLI CCNNNNNNNGG 2 cut(s) 262, 544
BseMI GCAATG 2 cut(s) 146, 678
BseMII CTCAG 4 cut(s) 101, 432, 690, 843
BseNI ACTGG 1 cut(s) 719
BseRI GAGGAG 2 cut(s) 55, 207
BseXI GCAGC 1 cut(s) 560
BshFI GGCC 2 cut(s) 105, 255
BsiHKAI GWGCWC 1 cut(s) 628
BsiHKCI CYCGRG 1 cut(s) 627
BslI CCNNNNNNNGG 2 cut(s) 262, 544
BsmAI GTCTC 3 cut(s) 67, 217, 830
BsmBI CGTCTC 2 cut(s) 217, 830
BsnI GGCC 2 cut(s) 105, 255
Bso31I GGTCTC 1 cut(s) 67
BsoBI CYCGRG 1 cut(s) 627
Bsp1286I GDGCHC 2 cut(s) 268, 628
Bsp1407I TGTACA 1 cut(s) 14
Bsp143I GATC 3 cut(s) 539, 599, 664
Bsp19I CCATGG 1 cut(s) 84
BspACI CCGC 2 cut(s) 551, 716
BspANI GGCC 2 cut(s) 105, 255
BspCNI CTCAG 4 cut(s) 102, 433, 691, 844
BspPI GGATC 1 cut(s) 607
BspQI GCTCTTC 1 cut(s) 96
BspTNI GGTCTC 1 cut(s) 67
BsrDI GCAATG 2 cut(s) 146, 678
BsrGI TGTACA 1 cut(s) 14
BsrI ACTGG 1 cut(s) 719
BssECI CCNNGG 3 cut(s) 84, 387, 405
BssMI GATC 3 cut(s) 539, 599, 664
BssNAI GTATAC 2 cut(s) 475, 957
BssT1I CCWWGG 3 cut(s) 84, 387, 405
Bst1107I GTATAC 2 cut(s) 475, 957
Bst4CI ACNGT 4 cut(s) 190, 211, 373, 575
Bst6I CTCTTC 1 cut(s) 96
BstAUI TGTACA 1 cut(s) 14
BstBAI YACGTR 1 cut(s) 815
BstC8I GCNNGC 3 cut(s) 107, 253, 624
BstDEI CTNAG 5 cut(s) 28, 110, 441, 699, 852
BstDSI CCRYGG 1 cut(s) 84
BstF5I GGATG 1 cut(s) 709
BstHHI GCGC 1 cut(s) 423
BstKTI GATC 3 cut(s) 542, 602, 667
BstMAI GTCTC 3 cut(s) 67, 217, 830
BstMBI GATC 3 cut(s) 539, 599, 664
BstMWI GCNNNNNNNGC 4 cut(s) 32, 272, 281, 689
BstV1I GCAGC 1 cut(s) 560
BstX2I RGATCY 1 cut(s) 599
BstXI CCANNNNNNTGG 2 cut(s) 85, 176
BstYI RGATCY 1 cut(s) 599
BstZ17I GTATAC 2 cut(s) 475, 957
Bsu36I CCTNAGG 1 cut(s) 28
BsuRI GGCC 2 cut(s) 105, 255
BtgI CCRYGG 1 cut(s) 84
BtsCI GGATG 1 cut(s) 709
BtsI GCAGTG 2 cut(s) 187, 957
BtsIMutI CAGTG 3 cut(s) 101, 187, 957
Cac8I GCNNGC 3 cut(s) 107, 253, 624
CaiI CAGNNNCTG 1 cut(s) 656
CfoI GCGC 1 cut(s) 423
Cfr13I GGNCC 2 cut(s) 207, 338
Csp6I GTAC 2 cut(s) 15, 401
CviAII CATG 3 cut(s) 85, 156, 176
CviQI GTAC 2 cut(s) 15, 401
DdeI CTNAG 5 cut(s) 28, 110, 441, 699, 852
DpnI GATC 3 cut(s) 541, 601, 666
DpnII GATC 3 cut(s) 539, 599, 664
EaeI YGGCCR 1 cut(s) 253
Eam1104I CTCTTC 1 cut(s) 96
EarI CTCTTC 1 cut(s) 96
Eco130I CCWWGG 3 cut(s) 84, 387, 405
Eco24I GRGCYC 1 cut(s) 268
Eco31I GGTCTC 1 cut(s) 67
Eco47I GGWCC 2 cut(s) 207, 338
Eco57I CTGAAG 2 cut(s) 77, 759
Eco81I CCTNAGG 1 cut(s) 28
Eco88I CYCGRG 1 cut(s) 627
EcoT14I CCWWGG 3 cut(s) 84, 387, 405
EcoT38I GRGCYC 1 cut(s) 268
ErhI CCWWGG 3 cut(s) 84, 387, 405
Esp3I CGTCTC 2 cut(s) 217, 830
FaeI CATG 3 cut(s) 88, 159, 179
FatI CATG 3 cut(s) 84, 155, 175
FauNDI CATATG 1 cut(s) 203
FblI GTMKAC 2 cut(s) 474, 956
Fnu4HI GCNGC 1 cut(s) 549
FokI GGATG 1 cut(s) 716
FriOI GRGCYC 1 cut(s) 268
Fsp4HI GCNGC 1 cut(s) 549
FspBI CTAG 2 cut(s) 365, 501
GlaI GCGC 1 cut(s) 422
GluI GCNGC 1 cut(s) 549
GsuI CTGGAG 1 cut(s) 398
HaeIII GGCC 2 cut(s) 105, 255
HhaI GCGC 1 cut(s) 423
Hin1II CATG 3 cut(s) 88, 159, 179
Hin6I GCGC 1 cut(s) 421
HinP1I GCGC 1 cut(s) 421
HindIII AAGCTT 1 cut(s) 456
HinfI GANTC 2 cut(s) 48, 593
HphI GGTGA 1 cut(s) 577
Hpy166II GTNNAC 3 cut(s) 475, 637, 957
Hpy188I TCNGA 4 cut(s) 442, 652, 754, 853
Hpy188III TCNNGA 2 cut(s) 269, 597
Hpy8I GTNNAC 3 cut(s) 475, 637, 957
HpyAV CCTTC 5 cut(s) 162, 274, 301, 562, 815
HpyCH4III ACNGT 4 cut(s) 190, 211, 373, 575
HpyCH4IV ACGT 3 cut(s) 235, 639, 814
HpyCH4V TGCA 3 cut(s) 35, 275, 950
HpyF10VI GCNNNNNNNGC 4 cut(s) 32, 272, 281, 689
HpyF3I CTNAG 5 cut(s) 28, 110, 441, 699, 852
HpySE526I ACGT 3 cut(s) 235, 639, 814
Hsp92II CATG 3 cut(s) 88, 159, 179
HspAI GCGC 1 cut(s) 421
Kzo9I GATC 3 cut(s) 539, 599, 664
LguI GCTCTTC 1 cut(s) 96
LmnI GCTCC 3 cut(s) 391, 418, 497
LpnPI CCDG 8 cut(s) 119, 237, 253, 360, 362, 604, 678, 732
Lsp1109I GCAGC 1 cut(s) 560
LweI GCATC 5 cut(s) 262, 446, 643, 679, 937
MaeI CTAG 2 cut(s) 365, 501
MaeII ACGT 3 cut(s) 235, 639, 814
MaeIII GTNAC 1 cut(s) 190
MalI GATC 3 cut(s) 541, 601, 666
MboI GATC 3 cut(s) 539, 599, 664
MboII GAAGA 6 cut(s) 32, 83, 120, 126, 752, 755
MflI RGATCY 1 cut(s) 599
MhlI GDGCHC 2 cut(s) 268, 628
MluCI AATT 7 cut(s) 36, 138, 411, 510, 614, 768, 923
MnlI CCTC 9 cut(s) 76, 228, 291, 472, 508, 553, 694, 871, 883
MseI TTAA 1 cut(s) 429
MslI CAYNNNNRTG 2 cut(s) 174, 180
MspA1I CMGCKG 1 cut(s) 551
MwoI GCNNNNNNNGC 4 cut(s) 32, 272, 281, 689
NcoI CCATGG 1 cut(s) 84
NdeI CATATG 1 cut(s) 203
NdeII GATC 3 cut(s) 539, 599, 664
NlaIII CATG 3 cut(s) 88, 159, 179
NmuCI GTSAC 1 cut(s) 190
PciSI GCTCTTC 1 cut(s) 96
PfeI GAWTC 2 cut(s) 48, 593
PkrI GCNGC 1 cut(s) 550
Ppu21I YACGTR 1 cut(s) 815
PsiI TTATAA 1 cut(s) 765
PspPI GGNCC 2 cut(s) 207, 338
PstNI CAGNNNCTG 1 cut(s) 656
PsuI RGATCY 1 cut(s) 599
RsaI GTAC 2 cut(s) 16, 402
RsaNI GTAC 2 cut(s) 15, 401
RseI CAYNNNNRTG 2 cut(s) 174, 180
SapI GCTCTTC 1 cut(s) 96
SaqAI TTAA 1 cut(s) 429
SatI GCNGC 1 cut(s) 549
Sau3AI GATC 3 cut(s) 539, 599, 664
Sau96I GGNCC 2 cut(s) 207, 338
SduI GDGCHC 2 cut(s) 268, 628
SfaNI GCATC 5 cut(s) 262, 446, 643, 679, 937
SinI GGWCC 2 cut(s) 207, 338
SmiMI CAYNNNNRTG 2 cut(s) 174, 180
SmlI CTYRAG 2 cut(s) 267, 929
SmoI CTYRAG 2 cut(s) 267, 929
Sse9I AATT 7 cut(s) 36, 138, 411, 510, 614, 768, 923
SsiI CCGC 2 cut(s) 551, 716
SspMI CTAG 2 cut(s) 365, 501
StyI CCWWGG 3 cut(s) 84, 387, 405
TaaI ACNGT 4 cut(s) 190, 211, 373, 575
TaiI ACGT 3 cut(s) 238, 642, 817
TaqI TCGA 1 cut(s) 164
TaqII GACCGA 1 cut(s) 539
TasI AATT 7 cut(s) 36, 138, 411, 510, 614, 768, 923
TatI WGTACW 1 cut(s) 14
TfiI GAWTC 2 cut(s) 48, 593
Tru1I TTAA 1 cut(s) 429
Tru9I TTAA 1 cut(s) 429
TscAI CASTG 3 cut(s) 101, 187, 957
TseFI GTSAC 1 cut(s) 190
TseI GCWGC 1 cut(s) 548
Tsp45I GTSAC 1 cut(s) 190
TspDTI ATGAA 5 cut(s) 120, 132, 144, 741, 834
TspGWI ACGGA 1 cut(s) 854
TspRI CASTG 3 cut(s) 101, 187, 957
VpaK11BI GGWCC 2 cut(s) 207, 338
XapI RAATTY 2 cut(s) 411, 614
XcmI CCANNNNNNNNNTGG 1 cut(s) 412
XmiI GTMKAC 2 cut(s) 474, 956
XspI CTAG 2 cut(s) 365, 501
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.