FvH4_2g35600

transcriptional regulatory protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0015073
Physical Location & Seq
Forward (+)
26255677 .. 26258295
2619 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g35600.t2

Sequence Viewer

Length: 969 bp
ATGGGATCATCTTGTACAATCAGAGCTTTAGGTTCAACCCTCCAAAGATTCACTTCCGGTGTCTCTTCCAAATGCCCCAACTCTTCGGCCAGGACTGGTTTGCTGAGTAGAAGCTTGTCATCTTCATCTTCCATTTCACCATTGCCTTCTTTATGGACTTCGACGCCTGTAGGAAGCATCCCCGGAGAAAGAAGAACCATCCGGACCGTCTCTCCTCTCTCCATGGGCCGACGCTCCAGCAAAATCGCTGGCCGAAAGGGGGCGCAAGACGCGAAGAAGATGAAGCTGTATTCCAAGATTGGGAAGGAACTGGTGTCTGCTTTGAGGAAGGGCGGTCCGAATCCTGTGACCAACACAGCCTTGGCTAGTATATTGGAGAAGGCCAAGGAGCTTGATGTACCCAAGGAAATCATCGATCGCAACATTAAGAGAGCATCTGAGAAGGGACAAGAAGCTTACATTGAGAAAGTTTACGAGGTATATGGTTATGGCGGAGCTAGCATGGTGGTTGAGGTATTGACAGATAAAATAACCCGATCTGTGGCAGCTGTTAGAGAGGTTGTAAAGAACTGTGGCGGGAAGATGGCAGATCCAGGATCTGTTCTGTTCAAATTCAGGCGTGCTCGGGTGGTAAACATAAAAGTTTCAGATGCTGACAAAGATCAGCTCCTCTCCATTGCTTTAGATGCTGGTGCTGAGGATGTTATTGAACCGCCAGCATATGAAGATGATACCGAAGAAGATCAATCAGAACGATATTACAAGATTGTGAGTGACTCAGAAAACTACTCAGCAATACTTTCAAAGTTACGTGATGAAGGAATCAAATTTGAGACAGATAATGGTTCTGAGCTACTTCCAATAAGCCCTATTGAGGTAGATGACGAGGCTGTGGATTTGAATAAGGAACTTATGACCAATTTACTTGAACTTGATGATGTTGATGCCGTTTATACAGACCAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transcrip_reg

Protein Analysis

323

Amino Acids

35.01

Weight (kDa)

5.65

Isoelectric Point (pI)

48.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TACO1_YebC_N PF20772 78 - 147 2.2e-23 TACO1/YebC protein N-terminal domain
Transcrip_reg PF01709 153 - 291 1.6e-28 TACO1/YebC second and third domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015073)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25830
fragaria_vesca FvH4_2g35600 FvH4_2g35600
malus_domestica MD08G1113700.v1.1
prunus_persica Prupe.1G448300_v2.0.a1
pyrus_communis pycom08g09440
rosa_chinensis RchiOBHm_Chr6g0306211
rosa_laevigata RLG00000010813
rosa_multiflora Rmu_sc0003594.1_g000003
rosa_roxburghii Rroxscaffold_7G00161930
rosa_rugosa Rorug06G0348100
rosa_samantha Rh6AG460600 Rh6BG440800 Rh6CG474600 Rh6DG460900
rosa_wichuraiana Rw6G040120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 272
AccIII TCCGGA 1 cut(s) 201
AciI CCGC 4 cut(s) 333, 492, 576, 713
AclWI GGATC 3 cut(s) 13, 584, 604
AcoI YGGCCR 2 cut(s) 87, 250
AcsI RAATTY 2 cut(s) 611, 827
AcyI GRCGYC 1 cut(s) 164
AfaI GTAC 2 cut(s) 16, 399
AfiI CCNNNNNNNGG 4 cut(s) 259, 300, 541, 874
AgsI TTSAA 6 cut(s) 36, 610, 710, 804, 901, 929
AjnI CCWGG 2 cut(s) 89, 592
AluBI AGCT 9 cut(s) 26, 114, 286, 391, 455, 497, 548, 667, 853
AluI AGCT 9 cut(s) 26, 114, 286, 391, 455, 497, 548, 667, 853
Alw21I GWGCWC 1 cut(s) 625
Alw26I GTCTC 3 cut(s) 67, 214, 827
AlwI GGATC 3 cut(s) 13, 584, 604
AlwNI CAGNNNCTG 2 cut(s) 599, 653
Ama87I CYCGRG 1 cut(s) 624
Aor13HI TCCGGA 1 cut(s) 201
AoxI GGCC 4 cut(s) 87, 226, 250, 381
ApeKI GCWGC 1 cut(s) 545
ApoI RAATTY 2 cut(s) 611, 827
AspLEI GCGC 1 cut(s) 265
AspS9I GGNCC 3 cut(s) 204, 226, 335
AsuC2I CCSGG 1 cut(s) 183
AsuHPI GGTGA 1 cut(s) 129
AsuNHI GCTAGC 1 cut(s) 497
AvaI CYCGRG 1 cut(s) 624
AvaII GGWCC 2 cut(s) 204, 335
Bbv12I GWGCWC 1 cut(s) 625
BbvCI CCTCAGC 1 cut(s) 696
BbvI GCAGC 1 cut(s) 557
BccI CCATC 2 cut(s) 206, 577
BceAI ACGGC 1 cut(s) 932
BciT130I CCWGG 2 cut(s) 91, 594
BcnI CCSGG 1 cut(s) 183
BcoDI GTCTC 3 cut(s) 67, 214, 827
BfaI CTAG 2 cut(s) 366, 498
BfmI CTRYAG 1 cut(s) 168
BisI GCNGC 1 cut(s) 546
BlsI GCNGC 1 cut(s) 547
Bme1390I CCNGG 3 cut(s) 91, 183, 594
Bme18I GGWCC 2 cut(s) 204, 335
BmeT110I CYCGRG 1 cut(s) 624
BmgT120I GGNCC 3 cut(s) 204, 226, 335
BmrFI CCNGG 3 cut(s) 91, 183, 594
BmsI GCATC 5 cut(s) 186, 443, 640, 676, 934
BmtI GCTAGC 1 cut(s) 501
BpmI CTGGAG 1 cut(s) 220
Bpu10I CCTNAGC 1 cut(s) 696
BpuMI CCSGG 1 cut(s) 183
Bsa29I ATCGAT 1 cut(s) 414
BsaAI YACGTR 1 cut(s) 812
BsaHI GRCGYC 1 cut(s) 164
BsaJI CCNNGG 5 cut(s) 181, 222, 360, 384, 402
BsaWI WCCGGW 2 cut(s) 56, 201
BsaXI ACNNNNNCTCC 2 cut(s) 196, 226
Bsc4I CCNNNNNNNGG 4 cut(s) 259, 300, 541, 874
Bse1I ACTGG 2 cut(s) 100, 315
Bse3DI GCAATG 2 cut(s) 140, 675
BseAI TCCGGA 1 cut(s) 201
BseBI CCWGG 2 cut(s) 91, 594
BseCI ATCGAT 1 cut(s) 414
BseDI CCNNGG 5 cut(s) 181, 222, 360, 384, 402
BseGI GGATG 3 cut(s) 177, 198, 706
BseLI CCNNNNNNNGG 4 cut(s) 259, 300, 541, 874
BseMI GCAATG 2 cut(s) 140, 675
BseMII CTCAG 6 cut(s) 95, 429, 687, 792, 804, 840
BseNI ACTGG 2 cut(s) 100, 315
BseRI GAGGAG 2 cut(s) 204, 659
BseXI GCAGC 1 cut(s) 557
Bsh1236I CGCG 1 cut(s) 272
Bsh1285I CGRYCG 1 cut(s) 418
BshFI GGCC 4 cut(s) 89, 228, 252, 383
BshVI ATCGAT 1 cut(s) 414
BsiEI CGRYCG 1 cut(s) 418
BsiHKAI GWGCWC 1 cut(s) 625
BsiHKCI CYCGRG 1 cut(s) 624
BsiSI CCGG 3 cut(s) 57, 183, 202
BslFI GGGAC 1 cut(s) 459
BslI CCNNNNNNNGG 4 cut(s) 259, 300, 541, 874
BsmAI GTCTC 3 cut(s) 67, 214, 827
BsmBI CGTCTC 1 cut(s) 214
BsmFI GGGAC 1 cut(s) 459
BsnI GGCC 4 cut(s) 89, 228, 252, 383
BsoBI CYCGRG 1 cut(s) 624
Bsp1286I GDGCHC 1 cut(s) 625
Bsp13I TCCGGA 1 cut(s) 201
Bsp1407I TGTACA 1 cut(s) 14
Bsp143I GATC 7 cut(s) 5, 415, 536, 589, 596, 661, 742
Bsp19I CCATGG 1 cut(s) 222
BspACI CCGC 4 cut(s) 333, 492, 576, 713
BspANI GGCC 4 cut(s) 89, 228, 252, 383
BspCNI CTCAG 6 cut(s) 96, 430, 688, 791, 803, 841
BspDI ATCGAT 1 cut(s) 414
BspEI TCCGGA 1 cut(s) 201
BspFNI CGCG 1 cut(s) 272
BspOI GCTAGC 1 cut(s) 501
BspPI GGATC 3 cut(s) 13, 584, 604
BsrDI GCAATG 2 cut(s) 140, 675
BsrGI TGTACA 1 cut(s) 14
BsrI ACTGG 2 cut(s) 100, 315
BssECI CCNNGG 5 cut(s) 181, 222, 360, 384, 402
BssMI GATC 7 cut(s) 5, 415, 536, 589, 596, 661, 742
BssNI GRCGYC 1 cut(s) 164
BssT1I CCWWGG 4 cut(s) 222, 360, 384, 402
Bst2UI CCWGG 2 cut(s) 91, 594
Bst4CI ACNGT 2 cut(s) 208, 572
Bst6I CTCTTC 2 cut(s) 70, 88
BstACI GRCGYC 1 cut(s) 164
BstAUI TGTACA 1 cut(s) 14
BstBAI YACGTR 1 cut(s) 812
BstC8I GCNNGC 4 cut(s) 250, 499, 621, 717
BstDEI CTNAG 6 cut(s) 104, 438, 696, 778, 790, 849
BstDSI CCRYGG 1 cut(s) 222
BstF5I GGATG 3 cut(s) 177, 198, 706
BstFNI CGCG 1 cut(s) 272
BstHHI GCGC 1 cut(s) 265
BstKTI GATC 7 cut(s) 8, 418, 539, 592, 599, 664, 745
BstMAI GTCTC 3 cut(s) 67, 214, 827
BstMBI GATC 7 cut(s) 5, 415, 536, 589, 596, 661, 742
BstMCI CGRYCG 1 cut(s) 418
BstMWI GCNNNNNNNGC 3 cut(s) 269, 498, 686
BstNI CCWGG 2 cut(s) 91, 594
BstSCI CCNGG 3 cut(s) 89, 181, 592
BstSFI CTRYAG 1 cut(s) 168
BstUI CGCG 1 cut(s) 272
BstV1I GCAGC 1 cut(s) 557
BstX2I RGATCY 2 cut(s) 589, 596
BstYI RGATCY 2 cut(s) 589, 596
Bsu15I ATCGAT 1 cut(s) 414
BsuRI GGCC 4 cut(s) 89, 228, 252, 383
BsuTUI ATCGAT 1 cut(s) 414
BtgI CCRYGG 1 cut(s) 222
BtsCI GGATG 3 cut(s) 177, 198, 706
Cac8I GCNNGC 4 cut(s) 250, 499, 621, 717
CaiI CAGNNNCTG 2 cut(s) 599, 653
CfoI GCGC 1 cut(s) 265
Cfr13I GGNCC 3 cut(s) 204, 226, 335
ClaI ATCGAT 1 cut(s) 414
CpoI CGGWCCG 2 cut(s) 204, 335
CseI GACGC 3 cut(s) 172, 240, 278
Csp6I GTAC 2 cut(s) 15, 398
CspI CGGWCCG 2 cut(s) 204, 335
CviAII CATG 2 cut(s) 223, 502
CviQI GTAC 2 cut(s) 15, 398
DdeI CTNAG 6 cut(s) 104, 438, 696, 778, 790, 849
DpnI GATC 7 cut(s) 7, 417, 538, 591, 598, 663, 744
DpnII GATC 7 cut(s) 5, 415, 536, 589, 596, 661, 742
EaeI YGGCCR 2 cut(s) 87, 250
Eam1104I CTCTTC 2 cut(s) 70, 88
EarI CTCTTC 2 cut(s) 70, 88
EciI GGCGGA 1 cut(s) 507
Eco130I CCWWGG 4 cut(s) 222, 360, 384, 402
Eco47I GGWCC 2 cut(s) 204, 335
Eco88I CYCGRG 1 cut(s) 624
EcoRII CCWGG 2 cut(s) 89, 592
EcoT14I CCWWGG 4 cut(s) 222, 360, 384, 402
ErhI CCWWGG 4 cut(s) 222, 360, 384, 402
Esp3I CGTCTC 1 cut(s) 214
FaeI CATG 2 cut(s) 226, 505
FalI AAGNNNNNCTT 2 cut(s) 37, 69
FaqI GGGAC 1 cut(s) 459
FatI CATG 2 cut(s) 222, 501
FauI CCCGC 1 cut(s) 569
FauNDI CATATG 1 cut(s) 721
Fnu4HI GCNGC 1 cut(s) 546
FokI GGATG 3 cut(s) 164, 185, 713
Fsp4HI GCNGC 1 cut(s) 546
FspBI CTAG 2 cut(s) 366, 498
GlaI GCGC 1 cut(s) 264
GluI GCNGC 1 cut(s) 546
GsuI CTGGAG 1 cut(s) 220
HaeIII GGCC 4 cut(s) 89, 228, 252, 383
HapII CCGG 3 cut(s) 57, 183, 202
HgaI GACGC 3 cut(s) 172, 240, 278
HhaI GCGC 1 cut(s) 265
Hin1I GRCGYC 1 cut(s) 164
Hin1II CATG 2 cut(s) 226, 505
Hin6I GCGC 1 cut(s) 263
HinP1I GCGC 1 cut(s) 263
HindIII AAGCTT 2 cut(s) 112, 453
HinfI GANTC 4 cut(s) 48, 340, 776, 822
HpaII CCGG 3 cut(s) 57, 183, 202
HphI GGTGA 1 cut(s) 129
Hpy166II GTNNAC 2 cut(s) 472, 634
Hpy188I TCNGA 7 cut(s) 23, 339, 439, 649, 751, 781, 850
Hpy188III TCNNGA 1 cut(s) 202
Hpy8I GTNNAC 2 cut(s) 472, 634
Hpy99I CGWCG 2 cut(s) 166, 234
HpyAV CCTTC 6 cut(s) 156, 298, 322, 373, 436, 812
HpyCH4III ACNGT 2 cut(s) 208, 572
HpyCH4IV ACGT 1 cut(s) 811
HpyF10VI GCNNNNNNNGC 3 cut(s) 269, 498, 686
HpyF3I CTNAG 6 cut(s) 104, 438, 696, 778, 790, 849
HpySE526I ACGT 1 cut(s) 811
Hsp92I GRCGYC 1 cut(s) 164
Hsp92II CATG 2 cut(s) 226, 505
HspAI GCGC 1 cut(s) 263
Kpn2I TCCGGA 1 cut(s) 201
Kzo9I GATC 7 cut(s) 5, 415, 536, 589, 596, 661, 742
LmnI GCTCC 4 cut(s) 239, 388, 494, 672
Lsp1109I GCAGC 1 cut(s) 557
LweI GCATC 5 cut(s) 186, 443, 640, 676, 934
MaeI CTAG 2 cut(s) 366, 498
MaeII ACGT 1 cut(s) 811
MaeIII GTNAC 3 cut(s) 346, 773, 807
MalI GATC 7 cut(s) 7, 417, 538, 591, 598, 663, 744
MboI GATC 7 cut(s) 5, 415, 536, 589, 596, 661, 742
MflI RGATCY 2 cut(s) 589, 596
MhlI GDGCHC 1 cut(s) 625
MluCI AATT 3 cut(s) 611, 827, 919
MlyI GAGTC 1 cut(s) 770
MroI TCCGGA 1 cut(s) 201
MseI TTAA 1 cut(s) 426
MspA1I CMGCKG 1 cut(s) 548
MspI CCGG 3 cut(s) 57, 183, 202
MspR9I CCNGG 3 cut(s) 91, 183, 594
MvaI CCWGG 2 cut(s) 91, 594
MvnI CGCG 1 cut(s) 272
MwoI GCNNNNNNNGC 3 cut(s) 269, 498, 686
NciI CCSGG 1 cut(s) 183
NcoI CCATGG 1 cut(s) 222
NdeI CATATG 1 cut(s) 721
NdeII GATC 7 cut(s) 5, 415, 536, 589, 596, 661, 742
NheI GCTAGC 1 cut(s) 497
NlaIII CATG 2 cut(s) 226, 505
NmuCI GTSAC 2 cut(s) 346, 773
PfeI GAWTC 3 cut(s) 48, 340, 822
PfoI TCCNGGA 1 cut(s) 592
PkrI GCNGC 1 cut(s) 547
Ple19I CGATCG 1 cut(s) 418
PleI GAGTC 1 cut(s) 770
PpsI GAGTC 1 cut(s) 770
Ppu21I YACGTR 1 cut(s) 812
Psp6I CCWGG 2 cut(s) 89, 592
PspGI CCWGG 2 cut(s) 89, 592
PspPI GGNCC 3 cut(s) 204, 226, 335
PstNI CAGNNNCTG 2 cut(s) 599, 653
PsuI RGATCY 2 cut(s) 589, 596
PvuI CGATCG 1 cut(s) 418
PvuII CAGCTG 1 cut(s) 548
RsaI GTAC 2 cut(s) 16, 399
RsaNI GTAC 2 cut(s) 15, 398
Rsr2I CGGWCCG 2 cut(s) 204, 335
RsrII CGGWCCG 2 cut(s) 204, 335
SaqAI TTAA 1 cut(s) 426
SatI GCNGC 1 cut(s) 546
Sau3AI GATC 7 cut(s) 5, 415, 536, 589, 596, 661, 742
Sau96I GGNCC 3 cut(s) 204, 226, 335
SchI GAGTC 1 cut(s) 770
ScrFI CCNGG 3 cut(s) 91, 183, 594
SduI GDGCHC 1 cut(s) 625
SfaNI GCATC 5 cut(s) 186, 443, 640, 676, 934
SfcI CTRYAG 1 cut(s) 168
SinI GGWCC 2 cut(s) 204, 335
Sse9I AATT 3 cut(s) 611, 827, 919
SsiI CCGC 4 cut(s) 333, 492, 576, 713
SspMI CTAG 2 cut(s) 366, 498
StyD4I CCNGG 3 cut(s) 89, 181, 592
StyI CCWWGG 4 cut(s) 222, 360, 384, 402
TaaI ACNGT 2 cut(s) 208, 572
TaiI ACGT 1 cut(s) 814
TaqI TCGA 2 cut(s) 161, 414
TasI AATT 3 cut(s) 611, 827, 919
TatI WGTACW 1 cut(s) 14
TfiI GAWTC 3 cut(s) 48, 340, 822
Tru1I TTAA 1 cut(s) 426
Tru9I TTAA 1 cut(s) 426
TseFI GTSAC 2 cut(s) 346, 773
TseI GCWGC 1 cut(s) 545
Tsp45I GTSAC 2 cut(s) 346, 773
TspDTI ATGAA 4 cut(s) 114, 296, 738, 831
VpaK11BI GGWCC 2 cut(s) 204, 335
XapI RAATTY 2 cut(s) 611, 827
XcmI CCANNNNNNNNNTGG 1 cut(s) 358
XspI CTAG 2 cut(s) 366, 498
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.