Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005366

Physical Location & Seq

Genomic Coordinates Forward (+)

11201303 .. 11204170

Gene Structure 2868 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G26310.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGTCAAATATGGATCCTAATTCAGTTTTACCTAAGAGAAGTTTCTTACAACATGAGTTGTTTTCACAATTACATATACCTGGAAGCTTAGCTTTCGAAGCATTTAGTTGTATCTCTAAGTTTACAGGAGCTTTGCTTTGTTGGTTTTCACATGGAAACTTGCAAAAAGAAGTATCTAAACATCAATGGGGATTAACTTGTAAGAGCCGTGATTCTTTAAAACATGTGTTTGAACATAGGAACGTCTCTGTGTTCCCATTTCACTATGTATCAAAAGATATTAGTCCTGGCTTCTTTGGAAACATATCTAAATCCACTATTCAGCATTTTGTTAATGAAGCTGAGAGGCTACATTCGTGTTCTTTGCTCTCTTTGGCGGCTGCGATGATACCGTCTTTGAATGTCATGTCTGCAAATGGACTTGCTCTGCCACTAGGGAGTAATGATGTTAAACTTAGGGAGAACATTGAACATAGGACTTGTCCGGAGAACACTGAACATAGGACTTGTCAGGTGGGATGTGAAGAATATAGTGGTTTGAGTTTTCAAAAATTAGACTGGACAAGACAATCAGTGGAGCCTAGGACGGGGATCGAGTTCCCGATGTTGTTGAAGGAGAATGCTTCGCGATCGAATTCTGAGGTGCTTGTTGCAACGGGATCTCGGACAATGAAAATTATCAGAATTAAATCTCTAAAAGTATATGCATTTGGTTTTTATGTTCACCCTTCCTCGGTCTGTCAGAAGCTTGGCCGAAAGTATGCCTCGGTTCCAGCAAGCAAACTTGACAAATGCGATGACTTATACAAAGACCTTCTTAGGGAGGATATTGTTATGAGTGTGAGGCTTGTGGTTAACTACAATGGCTTGAAGATCAATACTGTGAGAGATGTTTTCGAGAAATCTCTGCGTGCTCGCTTGGTTAAGGCAAATCCAAAAACTGATTTCAATTGTTTGAATGATTTTGGTTCATTCTTTAGACAAGACATTCCAATACCCGCGGGAACAATAATAGACTTTCGGCGAACAGAAGATGGACAGCTAATCACAGAGATTGGTGGTAACCTGATTGGAGCTGTCCGAAGCAAGGATCTTTGCAGAGCATTTTTTGGTATGTACATTGGAGATGTTCCGGTGTCAGAGCAGACAAAGGAGGAGATTGGTAGAAAAGTGGTGGGAATCATAAAGAGATGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005504 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0008150 GO:0008152 GO:0008289 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0019752 GO:0031406 GO:0032787 GO:0033293 GO:0036094 GO:0043167 GO:0043168 GO:0043177 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chalcone_2

Protein Analysis

398

Amino Acids

44.81

Weight (kDa)

9.06

Isoelectric Point (pI)

44.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chalcone_2	PF16035	215 - 351	1.5e-12	Chalcone isomerase like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005366)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26310 AT2G26310 AT2G26310 AT2G26310 AT2G26310
fragaria_vesca	FvH4_2g30870 FvH4_2g30870 FvH4_2g30870 FvH4_2g30870 FvH4_2g30870
malus_domestica	MD08G1072900.v1.1 MD15G1048900.v1.1
prunus_persica	Prupe.1G403200_v2.0.a1 Prupe.1G403200_v2.0.a1
pyrus_communis	pycom08g06030 pycom15g04770
rosa_chinensis	RchiOBHm_Chr6g0311981
rosa_laevigata	RLG00000010364
rosa_multiflora	Rmu_sc0005381.1_g000005
rosa_roxburghii	Rroxscaffold_7G00157170
rosa_rugosa	Rorug06G0391700 Rorug06G0391700 Rorug06G0391800 Rorug06G0391800
rosa_samantha	Rh6AG508300 Rh6BG519600 Rh6CG525400 Rh6DG511000
rosa_wichuraiana	Rw6G044250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	628, 1001
AccIII	TCCGGA	1 cut(s)	484
AciI	CCGC	3 cut(s)	377, 999, 1001
AclWI	GGATC	5 cut(s)	8, 21, 599, 667, 1098
AcoI	YGGCCR	1 cut(s)	751
AcsI	RAATTY	1 cut(s)	634
AfaI	GTAC	1 cut(s)	1118
AfiI	CCNNNNNNNGG	4 cut(s)	587, 733, 820, 1087
AflIII	ACRYGT	1 cut(s)	223
AgsI	TTSAA	8 cut(s)	233, 400, 470, 548, 613, 871, 949, 958
AjnI	CCWGG	2 cut(s)	79, 286
AluBI	AGCT	7 cut(s)	87, 92, 131, 341, 748, 1042, 1076
AluI	AGCT	7 cut(s)	87, 92, 131, 341, 748, 1042, 1076
Alw21I	GWGCWC	1 cut(s)	916
Alw26I	GTCTC	1 cut(s)	250
AlwI	GGATC	5 cut(s)	8, 21, 599, 667, 1098
Aor13HI	TCCGGA	1 cut(s)	484
AoxI	GGCC	1 cut(s)	751
ApeKI	GCWGC	1 cut(s)	380
ApoI	RAATTY	1 cut(s)	634
AspA2I	CCTAGG	1 cut(s)	581
AsuHPI	GGTGA	1 cut(s)	716
AsuII	TTCGAA	1 cut(s)	96
AvrII	CCTAGG	1 cut(s)	581
BamHI	GGATCC	1 cut(s)	13
Bbv12I	GWGCWC	1 cut(s)	916
BbvI	GCAGC	1 cut(s)	367
BccI	CCATC	1 cut(s)	1028
BceAI	ACGGC	1 cut(s)	192
BciT130I	CCWGG	2 cut(s)	81, 288
BcoDI	GTCTC	1 cut(s)	250
BfaI	CTAG	2 cut(s)	434, 582
BisI	GCNGC	2 cut(s)	378, 381
BlnI	CCTAGG	1 cut(s)	581
BlpI	GCTNAGC	1 cut(s)	88
BlsI	GCNGC	2 cut(s)	379, 382
Bme1390I	CCNGG	2 cut(s)	81, 288
BmiI	GGNNCC	3 cut(s)	15, 579, 771
BmrFI	CCNGG	2 cut(s)	81, 288
BmsI	GCATC	1 cut(s)	1181
Bpu1102I	GCTNAGC	1 cut(s)	88
Bpu14I	TTCGAA	1 cut(s)	96
BsaJI	CCNNGG	4 cut(s)	581, 732, 765, 999
BsaWI	WCCGGW	2 cut(s)	484, 1132
Bsc4I	CCNNNNNNNGG	4 cut(s)	587, 733, 820, 1087
Bse1I	ACTGG	1 cut(s)	563
BseAI	TCCGGA	1 cut(s)	484
BseBI	CCWGG	2 cut(s)	81, 288
BseDI	CCNNGG	4 cut(s)	581, 732, 765, 999
BseGI	GGATG	1 cut(s)	524
BseLI	CCNNNNNNNGG	4 cut(s)	587, 733, 820, 1087
BseMII	CTCAG	2 cut(s)	333, 630
BseNI	ACTGG	1 cut(s)	563
BseRI	GAGGAG	1 cut(s)	1169
BseXI	GCAGC	1 cut(s)	367
Bsh1236I	CGCG	2 cut(s)	628, 1001
Bsh1285I	CGRYCG	1 cut(s)	632
BshFI	GGCC	1 cut(s)	753
BsiEI	CGRYCG	1 cut(s)	632
BsiHKAI	GWGCWC	1 cut(s)	916
BsiSI	CCGG	2 cut(s)	485, 1133
BslI	CCNNNNNNNGG	4 cut(s)	587, 733, 820, 1087
BsmAI	GTCTC	1 cut(s)	250
BsmBI	CGTCTC	1 cut(s)	250
BsmI	GAATGC	1 cut(s)	625
BsnI	GGCC	1 cut(s)	753
Bsp119I	TTCGAA	1 cut(s)	96
Bsp1286I	GDGCHC	1 cut(s)	916
Bsp13I	TCCGGA	1 cut(s)	484
Bsp1407I	TGTACA	1 cut(s)	1116
Bsp143I	GATC	6 cut(s)	13, 591, 629, 659, 873, 1090
Bsp1720I	GCTNAGC	1 cut(s)	88
Bsp68I	TCGCGA	1 cut(s)	628
BspACI	CCGC	3 cut(s)	377, 999, 1001
BspANI	GGCC	1 cut(s)	753
BspCNI	CTCAG	2 cut(s)	334, 631
BspEI	TCCGGA	1 cut(s)	484
BspFNI	CGCG	2 cut(s)	628, 1001
BspLI	GGNNCC	3 cut(s)	15, 579, 771
BspPI	GGATC	5 cut(s)	8, 21, 599, 667, 1098
BspT104I	TTCGAA	1 cut(s)	96
BsrGI	TGTACA	1 cut(s)	1116
BsrI	ACTGG	1 cut(s)	563
BssECI	CCNNGG	4 cut(s)	581, 732, 765, 999
BssMI	GATC	6 cut(s)	13, 591, 629, 659, 873, 1090
BssT1I	CCWWGG	1 cut(s)	581
Bst2UI	CCWGG	2 cut(s)	81, 288
Bst4CI	ACNGT	2 cut(s)	393, 883
BstAUI	TGTACA	1 cut(s)	1116
BstBI	TTCGAA	1 cut(s)	96
BstC8I	GCNNGC	3 cut(s)	778, 912, 916
BstDEI	CTNAG	7 cut(s)	33, 88, 117, 342, 455, 639, 818
BstDSI	CCRYGG	1 cut(s)	999
BstEII	GGTNACC	1 cut(s)	1061
BstF5I	GGATG	1 cut(s)	524
BstFNI	CGCG	2 cut(s)	628, 1001
BstKTI	GATC	6 cut(s)	16, 594, 632, 662, 876, 1093
BstMAI	GTCTC	1 cut(s)	250
BstMBI	GATC	6 cut(s)	13, 591, 629, 659, 873, 1090
BstMCI	CGRYCG	1 cut(s)	632
BstMWI	GCNNNNNNNGC	1 cut(s)	98
BstNI	CCWGG	2 cut(s)	81, 288
BstNSI	RCATGY	1 cut(s)	227
BstPI	GGTNACC	1 cut(s)	1061
BstSCI	CCNGG	2 cut(s)	79, 286
BstUI	CGCG	2 cut(s)	628, 1001
BstV1I	GCAGC	1 cut(s)	367
BstX2I	RGATCY	3 cut(s)	13, 659, 1090
BstYI	RGATCY	3 cut(s)	13, 659, 1090
BsuRI	GGCC	1 cut(s)	753
BtgI	CCRYGG	1 cut(s)	999
BtgZI	GCGATG	2 cut(s)	398, 810
BtsCI	GGATG	1 cut(s)	524
BtsIMutI	CAGTG	2 cut(s)	492, 579
BtuMI	TCGCGA	1 cut(s)	628
Cac8I	GCNNGC	3 cut(s)	778, 912, 916
Cfr42I	CCGCGG	1 cut(s)	1002
Csp6I	GTAC	1 cut(s)	1117
CviAII	CATG	4 cut(s)	53, 152, 224, 406
CviQI	GTAC	1 cut(s)	1117
DdeI	CTNAG	7 cut(s)	33, 88, 117, 342, 455, 639, 818
DpnI	GATC	6 cut(s)	15, 593, 631, 661, 875, 1092
DpnII	GATC	6 cut(s)	13, 591, 629, 659, 873, 1090
DraI	TTTAAA	1 cut(s)	219
EaeI	YGGCCR	1 cut(s)	751
Eco130I	CCWWGG	1 cut(s)	581
Eco91I	GGTNACC	1 cut(s)	1061
EcoO65I	GGTNACC	1 cut(s)	1061
EcoRI	GAATTC	1 cut(s)	634
EcoRII	CCWGG	2 cut(s)	79, 286
EcoT14I	CCWWGG	1 cut(s)	581
EcoT22I	ATGCAT	1 cut(s)	709
ErhI	CCWWGG	1 cut(s)	581
Esp3I	CGTCTC	1 cut(s)	250
FaeI	CATG	4 cut(s)	56, 155, 227, 409
FalI	AAGNNNNNCTT	4 cut(s)	76, 108, 801, 833
FatI	CATG	4 cut(s)	52, 151, 223, 405
FauI	CCCGC	2 cut(s)	994, 1006
Fnu4HI	GCNGC	2 cut(s)	378, 381
FokI	GGATG	1 cut(s)	531
Fsp4HI	GCNGC	2 cut(s)	378, 381
FspBI	CTAG	2 cut(s)	434, 582
GluI	GCNGC	2 cut(s)	378, 381
HaeIII	GGCC	1 cut(s)	753
HapII	CCGG	2 cut(s)	485, 1133
Hin1II	CATG	4 cut(s)	56, 155, 227, 409
HincII	GTYRAC	1 cut(s)	856
HindII	GTYRAC	1 cut(s)	856
HindIII	AAGCTT	2 cut(s)	85, 746
HinfI	GANTC	2 cut(s)	212, 1179
HpaI	GTTAAC	1 cut(s)	856
HpaII	CCGG	2 cut(s)	485, 1133
HphI	GGTGA	1 cut(s)	716
Hpy166II	GTNNAC	3 cut(s)	123, 724, 856
Hpy188I	TCNGA	6 cut(s)	640, 666, 683, 744, 1082, 1141
Hpy188III	TCNNGA	4 cut(s)	485, 601, 627, 898
Hpy8I	GTNNAC	3 cut(s)	123, 724, 856
HpyAV	CCTTC	3 cut(s)	607, 738, 824
HpyCH4III	ACNGT	2 cut(s)	393, 883
HpyCH4IV	ACGT	1 cut(s)	243
HpyCH4V	TGCA	5 cut(s)	163, 413, 653, 707, 1098
HpyF10VI	GCNNNNNNNGC	1 cut(s)	98
HpyF3I	CTNAG	7 cut(s)	33, 88, 117, 342, 455, 639, 818
HpySE526I	ACGT	1 cut(s)	243
Hsp92II	CATG	4 cut(s)	56, 155, 227, 409
Kpn2I	TCCGGA	1 cut(s)	484
KspAI	GTTAAC	1 cut(s)	856
KspI	CCGCGG	1 cut(s)	1002
Kzo9I	GATC	6 cut(s)	13, 591, 629, 659, 873, 1090
LmnI	GCTCC	3 cut(s)	128, 577, 1073
Lsp1109I	GCAGC	1 cut(s)	367
LweI	GCATC	1 cut(s)	1181
MaeI	CTAG	2 cut(s)	434, 582
MaeII	ACGT	1 cut(s)	243
MaeIII	GTNAC	1 cut(s)	1061
MalI	GATC	6 cut(s)	15, 593, 631, 661, 875, 1092
MboI	GATC	6 cut(s)	13, 591, 629, 659, 873, 1090
MboII	GAAGA	3 cut(s)	536, 883, 1043
MfeI	CAATTG	1 cut(s)	949
MflI	RGATCY	3 cut(s)	13, 659, 1090
MhlI	GDGCHC	1 cut(s)	916
MluCI	AATT	7 cut(s)	19, 68, 551, 634, 675, 684, 949
MnlI	CCTC	7 cut(s)	339, 634, 742, 775, 817, 837, 1147
Mph1103I	ATGCAT	1 cut(s)	709
MroI	TCCGGA	1 cut(s)	484
MseI	TTAA	7 cut(s)	194, 218, 333, 450, 687, 855, 924
MspA1I	CMGCKG	1 cut(s)	1001
MspI	CCGG	2 cut(s)	485, 1133
MspR9I	CCNGG	2 cut(s)	81, 288
MunI	CAATTG	1 cut(s)	949
Mva1269I	GAATGC	1 cut(s)	625
MvaI	CCWGG	2 cut(s)	81, 288
MvnI	CGCG	2 cut(s)	628, 1001
MwoI	GCNNNNNNNGC	1 cut(s)	98
NdeII	GATC	6 cut(s)	13, 591, 629, 659, 873, 1090
NlaIII	CATG	4 cut(s)	56, 155, 227, 409
NlaIV	GGNNCC	3 cut(s)	15, 579, 771
NruI	TCGCGA	1 cut(s)	628
NsiI	ATGCAT	1 cut(s)	709
NspI	RCATGY	1 cut(s)	227
NspV	TTCGAA	1 cut(s)	96
PciI	ACATGT	1 cut(s)	223
PctI	GAATGC	1 cut(s)	625
PfeI	GAWTC	2 cut(s)	212, 1179
PkrI	GCNGC	2 cut(s)	379, 382
Ple19I	CGATCG	1 cut(s)	632
PscI	ACATGT	1 cut(s)	223
Psp6I	CCWGG	2 cut(s)	79, 286
PspEI	GGTNACC	1 cut(s)	1061
PspGI	CCWGG	2 cut(s)	79, 286
PspN4I	GGNNCC	3 cut(s)	15, 579, 771
PsuI	RGATCY	3 cut(s)	13, 659, 1090
PvuI	CGATCG	1 cut(s)	632
RruI	TCGCGA	1 cut(s)	628
RsaI	GTAC	1 cut(s)	1118
RsaNI	GTAC	1 cut(s)	1117
SacII	CCGCGG	1 cut(s)	1002
SaqAI	TTAA	7 cut(s)	194, 218, 333, 450, 687, 855, 924
SatI	GCNGC	2 cut(s)	378, 381
Sau3AI	GATC	6 cut(s)	13, 591, 629, 659, 873, 1090
ScrFI	CCNGG	2 cut(s)	81, 288
SduI	GDGCHC	1 cut(s)	916
SfaNI	GCATC	1 cut(s)	1181
Sfr303I	CCGCGG	1 cut(s)	1002
SfuI	TTCGAA	1 cut(s)	96
SgrBI	CCGCGG	1 cut(s)	1002
Sse9I	AATT	7 cut(s)	19, 68, 551, 634, 675, 684, 949
SsiI	CCGC	3 cut(s)	377, 999, 1001
SspMI	CTAG	2 cut(s)	434, 582
StyD4I	CCNGG	2 cut(s)	79, 286
StyI	CCWWGG	1 cut(s)	581
TaaI	ACNGT	2 cut(s)	393, 883
TaiI	ACGT	1 cut(s)	246
TaqI	TCGA	4 cut(s)	96, 594, 632, 897
TaqII	GACCGA	1 cut(s)	724
TasI	AATT	7 cut(s)	19, 68, 551, 634, 675, 684, 949
TatI	WGTACW	1 cut(s)	1116
TauI	GCSGC	1 cut(s)	380
TfiI	GAWTC	2 cut(s)	212, 1179
Tru1I	TTAA	7 cut(s)	194, 218, 333, 450, 687, 855, 924
Tru9I	TTAA	7 cut(s)	194, 218, 333, 450, 687, 855, 924
TscAI	CASTG	2 cut(s)	499, 579
TseI	GCWGC	1 cut(s)	380
TspDTI	ATGAA	3 cut(s)	351, 686, 960
TspRI	CASTG	2 cut(s)	499, 579
XapI	RAATTY	1 cut(s)	634
XceI	RCATGY	1 cut(s)	227
XmaJI	CCTAGG	1 cut(s)	581
XspI	CTAG	2 cut(s)	434, 582
Zsp2I	ATGCAT	1 cut(s)	709

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.