Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0005366

Physical Location & Seq

Genomic Coordinates Reverse (-)

5893720 .. 5897523

Gene Structure 3804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1072900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

ATGAGGATTAAGAGGTTCGGGTTCATGGATTTCGATGAAGGGTCTCCATACAATTCACATTTTACTTCATTGGCGGACAATTCATTGCACCGGTGTAGATACTTTCATGTTCCCGGAAGTTTAGCTCTTGAAGGAGCATTTAACCACGTTTCTAAACTTGCTGGTTCTTTACCGTTCTTCTTCTCTAGTGGACCCAATACAAATGCTTCTAGAGAGATAGAGGGTAATTTGCATGATTCTGAACCTGGACACTCCACGTCTTCTCCACAAGTTAAACATTTTACTTCTGGTCGACATAATCTTAAAGGATTTCACTTTGGATTTGCATTGAGAGGAGAATCTGCTAATGCAGTTGTTTTTGGAAAGATTTCGGCTTTTGTGATGCAATTCCTACACAGAGAAGGTGAAAAGCTACATTCACATCCCATGCTCTCGTTAGCTGCTGGACTTGTACCTCCTTTCGGCAGCTTATCATCAAATGTACTAGCTGTTCCATTGGAGAATACCGATGTCATGGACCAAAAGCCTTGTGAAGTTGAGCATCACAGGTGTGCAGGATTACCATTTCCCGACTTGGACTGGAGAAAACAAGCAGTGGAACCTAAAACCGGCACTGAGTTTCCTATGATTTTGGACAATGTTTTAACACAAGAGAGTAATTCCAGTTTAAGTTCAGAGGTCCTTGTGGGAACTGGATCCAAAACAATGACGATAATCAAAATAAAATCTCTGAAGTTATATGCATTTGGGTTTTATGTCCATCCTCACTCGGTTTGCAAGCAATTGGGGGCAAAATATGCATCCATTTCAGTTGATGAACTAAACAAACGCCATGATTTCTATGAGGATCTTCTCAGAGCGGATATTGATATGACAGTTAGGCTTGTGGTTAATTGCAACGGGATGAAAATCGATACAGTGAGAGATGTCTTTGAGAAATCCCTTCGAGACCGATTAGTGAAGACAAACCCAGAGACTGACTATCATTGCATAAGAACATTTGGTTCAAACTTTACACAAGATATTCCCTTGCCATTGGGAACAACAATCGATTTTCAACGCACAGCCGATGGAAACTTAATTACTAAAATTGAAGGTAATCAGGTTGGAGCAGTCCACAGCAAGGATCTATGCAGGGCTTTCTTTGACATGTACCTTGGAGATGTTCCCGTGTCAGAGCAAACAAAAGAGGAGATTGGCAGAAACGTCGTCAATATTATACGAAGTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005504 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0008150 GO:0008152 GO:0008289 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0019752 GO:0031406 GO:0032787 GO:0033293 GO:0036094 GO:0043167 GO:0043168 GO:0043177 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chalcone_2

Protein Analysis

411

Amino Acids

45.67

Weight (kDa)

6.55

Isoelectric Point (pI)

32.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chalcone	PF02431	219 - 401	1.2e-08	Chalcone-flavanone isomerase
Chalcone_2	PF16035	227 - 399	2.2e-19	Chalcone isomerase like
Chalcone_3	PF16036	276 - 398	4.3e-06	Chalcone isomerase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005366)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26310 AT2G26310 AT2G26310 AT2G26310 AT2G26310
fragaria_vesca	FvH4_2g30870 FvH4_2g30870 FvH4_2g30870 FvH4_2g30870 FvH4_2g30870
malus_domestica	MD08G1072900.v1.1 MD15G1048900.v1.1
prunus_persica	Prupe.1G403200_v2.0.a1 Prupe.1G403200_v2.0.a1
pyrus_communis	pycom08g06030 pycom15g04770
rosa_chinensis	RchiOBHm_Chr6g0311981
rosa_laevigata	RLG00000010364
rosa_multiflora	Rmu_sc0005381.1_g000005
rosa_roxburghii	Rroxscaffold_7G00157170
rosa_rugosa	Rorug06G0391700 Rorug06G0391700 Rorug06G0391800 Rorug06G0391800
rosa_samantha	Rh6AG508300 Rh6BG519600 Rh6CG525400 Rh6DG511000
rosa_wichuraiana	Rw6G044250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	860
AccI	GTMKAC	1 cut(s)	292
AciI	CCGC	2 cut(s)	74, 860
AclWI	GGATC	4 cut(s)	690, 703, 855, 1134
AcuI	CTGAAG	1 cut(s)	752
AfaI	GTAC	3 cut(s)	453, 483, 1154
AfiI	CCNNNNNNNGG	3 cut(s)	461, 608, 1123
AflIII	ACRYGT	1 cut(s)	1149
AgeI	ACCGGT	1 cut(s)	90
AgsI	TTSAA	4 cut(s)	131, 1008, 1058, 1094
AjiI	CACGTC	1 cut(s)	258
AjnI	CCWGG	1 cut(s)	244
AleI	CACNNNNGTG	1 cut(s)	549
AluBI	AGCT	5 cut(s)	125, 412, 440, 468, 488
AluI	AGCT	5 cut(s)	125, 412, 440, 468, 488
Alw26I	GTCTC	3 cut(s)	48, 942, 968
AlwI	GGATC	4 cut(s)	690, 703, 855, 1134
AlwNI	CAGNNNCTG	1 cut(s)	977
ApeKI	GCWGC	2 cut(s)	440, 465
AsiGI	ACCGGT	1 cut(s)	90
Asp700I	GAANNNNTTC	1 cut(s)	367
AspS9I	GGNCC	3 cut(s)	191, 517, 679
AsuC2I	CCSGG	1 cut(s)	114
AsuHPI	GGTGA	1 cut(s)	416
AvaII	GGWCC	3 cut(s)	191, 517, 679
BamHI	GGATCC	1 cut(s)	695
BbsI	GAAGAC	2 cut(s)	252, 968
BbvI	GCAGC	2 cut(s)	427, 477
BccI	CCATC	2 cut(s)	768, 1064
BcgI	CGANNNNNNTGC	2 cut(s)	1189, 1223
BciT130I	CCWGG	1 cut(s)	246
BcnI	CCSGG	1 cut(s)	114
BcoDI	GTCTC	3 cut(s)	48, 942, 968
BfaI	CTAG	3 cut(s)	186, 210, 485
BisI	GCNGC	2 cut(s)	441, 466
BlsI	GCNGC	2 cut(s)	442, 467
Bme1390I	CCNGG	2 cut(s)	114, 246
Bme18I	GGWCC	3 cut(s)	191, 517, 679
BmgBI	CACGTC	1 cut(s)	258
BmgT120I	GGNCC	3 cut(s)	191, 517, 679
BmiI	GGNNCC	3 cut(s)	193, 600, 697
BmrFI	CCNGG	2 cut(s)	114, 246
BmsI	GCATC	3 cut(s)	372, 550, 809
BpiI	GAAGAC	2 cut(s)	252, 968
BpmI	CTGGAG	1 cut(s)	601
BpuMI	CCSGG	1 cut(s)	114
Bsa29I	ATCGAT	2 cut(s)	912, 1050
BsaBI	GATNNNNATC	1 cut(s)	908
BsaI	GGTCTC	2 cut(s)	48, 942
BsaJI	CCNNGG	1 cut(s)	1156
BsaWI	WCCGGW	1 cut(s)	90
BsaXI	ACNNNNNCTCC	2 cut(s)	247, 277
Bsc4I	CCNNNNNNNGG	3 cut(s)	461, 608, 1123
Bse118I	RCCGGY	2 cut(s)	90, 608
Bse1I	ACTGG	3 cut(s)	584, 663, 697
Bse3DI	GCAATG	2 cut(s)	83, 985
Bse8I	GATNNNNATC	1 cut(s)	908
BseBI	CCWGG	1 cut(s)	246
BseCI	ATCGAT	2 cut(s)	912, 1050
BseDI	CCNNGG	1 cut(s)	1156
BseGI	GGATG	4 cut(s)	421, 760, 800, 909
BseJI	GATNNNNATC	1 cut(s)	908
BseLI	CCNNNNNNNGG	3 cut(s)	461, 608, 1123
BseMI	GCAATG	2 cut(s)	83, 985
BseMII	CTCAG	2 cut(s)	606, 868
BseNI	ACTGG	3 cut(s)	584, 663, 697
BseRI	GAGGAG	2 cut(s)	348, 1205
BseXI	GCAGC	2 cut(s)	427, 477
BsgI	GTGCAG	1 cut(s)	573
BshTI	ACCGGT	1 cut(s)	90
BshVI	ATCGAT	2 cut(s)	912, 1050
BsiSI	CCGG	3 cut(s)	91, 114, 609
BslI	CCNNNNNNNGG	3 cut(s)	461, 608, 1123
BsmAI	GTCTC	3 cut(s)	48, 942, 968
Bso31I	GGTCTC	2 cut(s)	48, 942
Bsp143I	GATC	3 cut(s)	695, 847, 1126
BspACI	CCGC	2 cut(s)	74, 860
BspCNI	CTCAG	2 cut(s)	607, 867
BspDI	ATCGAT	2 cut(s)	912, 1050
BspLI	GGNNCC	3 cut(s)	193, 600, 697
BspPI	GGATC	4 cut(s)	690, 703, 855, 1134
BspTNI	GGTCTC	2 cut(s)	48, 942
BsrBI	CCGCTC	1 cut(s)	860
BsrDI	GCAATG	2 cut(s)	83, 985
BsrFI	RCCGGY	2 cut(s)	90, 608
BsrI	ACTGG	3 cut(s)	584, 663, 697
BssAI	RCCGGY	2 cut(s)	90, 608
BssECI	CCNNGG	1 cut(s)	1156
BssMI	GATC	3 cut(s)	695, 847, 1126
BssT1I	CCWWGG	1 cut(s)	1156
Bst2UI	CCWGG	1 cut(s)	246
Bst4CI	ACNGT	3 cut(s)	174, 877, 919
BstAPI	GCANNNNNTGC	1 cut(s)	797
BstC8I	GCNNGC	1 cut(s)	779
BstDEI	CTNAG	2 cut(s)	615, 854
BstF5I	GGATG	4 cut(s)	421, 760, 800, 909
BstKTI	GATC	3 cut(s)	698, 850, 1129
BstMAI	GTCTC	3 cut(s)	48, 942, 968
BstMBI	GATC	3 cut(s)	695, 847, 1126
BstMWI	GCNNNNNNNGC	1 cut(s)	797
BstNI	CCWGG	1 cut(s)	246
BstNSI	RCATGY	1 cut(s)	1153
BstSCI	CCNGG	2 cut(s)	112, 244
BstV1I	GCAGC	2 cut(s)	427, 477
BstV2I	GAAGAC	2 cut(s)	252, 968
BstX2I	RGATCY	3 cut(s)	695, 847, 1126
BstYI	RGATCY	3 cut(s)	695, 847, 1126
Bsu15I	ATCGAT	2 cut(s)	912, 1050
BsuTUI	ATCGAT	2 cut(s)	912, 1050
BtrI	CACGTC	1 cut(s)	258
BtsCI	GGATG	4 cut(s)	421, 760, 800, 909
BtsI	GCAGTG	1 cut(s)	600
BtsIMutI	CAGTG	3 cut(s)	600, 612, 924
Cac8I	GCNNGC	1 cut(s)	779
CaiI	CAGNNNCTG	1 cut(s)	977
Cfr10I	RCCGGY	2 cut(s)	90, 608
Cfr13I	GGNCC	3 cut(s)	191, 517, 679
ClaI	ATCGAT	2 cut(s)	912, 1050
Csp6I	GTAC	3 cut(s)	452, 482, 1153
CspAI	ACCGGT	1 cut(s)	90
CviAII	CATG	7 cut(s)	25, 107, 233, 427, 514, 833, 1150
CviQI	GTAC	3 cut(s)	452, 482, 1153
DdeI	CTNAG	2 cut(s)	615, 854
DpnI	GATC	3 cut(s)	697, 849, 1128
DpnII	GATC	3 cut(s)	695, 847, 1126
EciI	GGCGGA	1 cut(s)	89
Eco130I	CCWWGG	1 cut(s)	1156
Eco31I	GGTCTC	2 cut(s)	48, 942
Eco47I	GGWCC	3 cut(s)	191, 517, 679
Eco57I	CTGAAG	1 cut(s)	752
EcoO109I	RGGNCCY	1 cut(s)	679
EcoRII	CCWGG	1 cut(s)	244
EcoT14I	CCWWGG	1 cut(s)	1156
EcoT22I	ATGCAT	2 cut(s)	745, 802
ErhI	CCWWGG	1 cut(s)	1156
FaeI	CATG	7 cut(s)	28, 110, 236, 430, 517, 836, 1153
FatI	CATG	7 cut(s)	24, 106, 232, 426, 513, 832, 1149
FblI	GTMKAC	1 cut(s)	292
Fnu4HI	GCNGC	2 cut(s)	441, 466
FokI	GGATG	4 cut(s)	408, 747, 787, 916
Fsp4HI	GCNGC	2 cut(s)	441, 466
FspBI	CTAG	3 cut(s)	186, 210, 485
GluI	GCNGC	2 cut(s)	441, 466
GsuI	CTGGAG	1 cut(s)	601
HapII	CCGG	3 cut(s)	91, 114, 609
Hin1II	CATG	7 cut(s)	28, 110, 236, 430, 517, 836, 1153
HincII	GTYRAC	1 cut(s)	293
HindII	GTYRAC	1 cut(s)	293
HinfI	GANTC	2 cut(s)	236, 338
HpaII	CCGG	3 cut(s)	91, 114, 609
HphI	GGTGA	1 cut(s)	416
Hpy166II	GTNNAC	3 cut(s)	191, 293, 1117
Hpy188I	TCNGA	5 cut(s)	241, 676, 732, 857, 1177
Hpy188III	TCNNGA	4 cut(s)	128, 210, 569, 947
Hpy8I	GTNNAC	3 cut(s)	191, 293, 1117
Hpy99I	CGWCG	1 cut(s)	1211
HpyAV	CCTTC	5 cut(s)	32, 125, 395, 953, 1088
HpyCH4III	ACNGT	3 cut(s)	174, 877, 919
HpyCH4IV	ACGT	3 cut(s)	147, 257, 1206
HpyF10VI	GCNNNNNNNGC	1 cut(s)	797
HpyF3I	CTNAG	2 cut(s)	615, 854
HpySE526I	ACGT	3 cut(s)	147, 257, 1206
Hsp92II	CATG	7 cut(s)	28, 110, 236, 430, 517, 836, 1153
Kzo9I	GATC	3 cut(s)	695, 847, 1126
LmnI	GCTCC	2 cut(s)	134, 1109
Lsp1109I	GCAGC	2 cut(s)	427, 477
LweI	GCATC	3 cut(s)	372, 550, 809
MaeI	CTAG	3 cut(s)	186, 210, 485
MaeII	ACGT	3 cut(s)	147, 257, 1206
MalI	GATC	3 cut(s)	697, 849, 1128
MbiI	CCGCTC	1 cut(s)	860
MboI	GATC	3 cut(s)	695, 847, 1126
MboII	GAAGA	5 cut(s)	169, 172, 252, 842, 973
MfeI	CAATTG	1 cut(s)	782
MflI	RGATCY	3 cut(s)	695, 847, 1126
MluCI	AATT	9 cut(s)	52, 79, 226, 386, 658, 782, 892, 1080, 1089
MmeI	TCCRAC	1 cut(s)	1087
MnlI	CCTC	8 cut(s)	6, 214, 326, 465, 670, 774, 838, 1183
Mph1103I	ATGCAT	2 cut(s)	745, 802
MroXI	GAANNNNTTC	1 cut(s)	367
MseI	TTAA	8 cut(s)	9, 141, 273, 303, 644, 668, 891, 1079
MslI	CAYNNNNRTG	1 cut(s)	549
MspI	CCGG	3 cut(s)	91, 114, 609
MspR9I	CCNGG	2 cut(s)	114, 246
MunI	CAATTG	1 cut(s)	782
MvaI	CCWGG	1 cut(s)	246
MwoI	GCNNNNNNNGC	1 cut(s)	797
NciI	CCSGG	1 cut(s)	114
NdeII	GATC	3 cut(s)	695, 847, 1126
NlaIII	CATG	7 cut(s)	28, 110, 236, 430, 517, 836, 1153
NlaIV	GGNNCC	3 cut(s)	193, 600, 697
NsiI	ATGCAT	2 cut(s)	745, 802
NspI	RCATGY	1 cut(s)	1153
OliI	CACNNNNGTG	1 cut(s)	549
PciI	ACATGT	1 cut(s)	1149
PdmI	GAANNNNTTC	1 cut(s)	367
PfeI	GAWTC	2 cut(s)	236, 338
PfoI	TCCNGGA	1 cut(s)	112
PinAI	ACCGGT	1 cut(s)	90
PkrI	GCNGC	2 cut(s)	442, 467
PpuMI	RGGWCCY	1 cut(s)	679
PscI	ACATGT	1 cut(s)	1149
Psp5II	RGGWCCY	1 cut(s)	679
Psp6I	CCWGG	1 cut(s)	244
PspGI	CCWGG	1 cut(s)	244
PspN4I	GGNNCC	3 cut(s)	193, 600, 697
PspPI	GGNCC	3 cut(s)	191, 517, 679
PspPPI	RGGWCCY	1 cut(s)	679
PsrI	GAACNNNNNNTAC	2 cut(s)	474, 506
PstNI	CAGNNNCTG	1 cut(s)	977
PsuI	RGATCY	3 cut(s)	695, 847, 1126
RsaI	GTAC	3 cut(s)	453, 483, 1154
RsaNI	GTAC	3 cut(s)	452, 482, 1153
RseI	CAYNNNNRTG	1 cut(s)	549
SalI	GTCGAC	1 cut(s)	291
SaqAI	TTAA	8 cut(s)	9, 141, 273, 303, 644, 668, 891, 1079
SatI	GCNGC	2 cut(s)	441, 466
Sau3AI	GATC	3 cut(s)	695, 847, 1126
Sau96I	GGNCC	3 cut(s)	191, 517, 679
ScrFI	CCNGG	2 cut(s)	114, 246
SfaNI	GCATC	3 cut(s)	372, 550, 809
SgrAI	CRCCGGYG	1 cut(s)	90
SinI	GGWCC	3 cut(s)	191, 517, 679
SmiMI	CAYNNNNRTG	1 cut(s)	549
Sse9I	AATT	9 cut(s)	52, 79, 226, 386, 658, 782, 892, 1080, 1089
SsiI	CCGC	2 cut(s)	74, 860
SspI	AATATT	1 cut(s)	1216
SspMI	CTAG	3 cut(s)	186, 210, 485
StyD4I	CCNGG	2 cut(s)	112, 244
StyI	CCWWGG	1 cut(s)	1156
TaaI	ACNGT	3 cut(s)	174, 877, 919
TaiI	ACGT	3 cut(s)	150, 260, 1209
TaqI	TCGA	5 cut(s)	33, 292, 912, 946, 1050
TaqII	GACCGA	1 cut(s)	966
TasI	AATT	9 cut(s)	52, 79, 226, 386, 658, 782, 892, 1080, 1089
TatI	WGTACW	1 cut(s)	481
TfiI	GAWTC	2 cut(s)	236, 338
Tru1I	TTAA	8 cut(s)	9, 141, 273, 303, 644, 668, 891, 1079
Tru9I	TTAA	8 cut(s)	9, 141, 273, 303, 644, 668, 891, 1079
TscAI	CASTG	3 cut(s)	600, 619, 924
TseI	GCWGC	2 cut(s)	440, 465
TspDTI	ATGAA	7 cut(s)	13, 51, 57, 72, 95, 831, 920
TspRI	CASTG	3 cut(s)	600, 619, 924
VpaK11BI	GGWCC	3 cut(s)	191, 517, 679
XbaI	TCTAGA	1 cut(s)	209
XceI	RCATGY	1 cut(s)	1153
XmiI	GTMKAC	1 cut(s)	292
XmnI	GAANNNNTTC	1 cut(s)	367
XspI	CTAG	3 cut(s)	186, 210, 485
Zsp2I	ATGCAT	2 cut(s)	745, 802

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.