Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0005366

Physical Location & Seq

Genomic Coordinates Reverse (-)

68052915 .. 68057351

Gene Structure 4437 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG525400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGAAGAATAATTGGTTTTGGTTTGGGGATTTTGATGACGGGTCTTCGTACAACTTTCCGCTGGAGCCTCTGATTTTGCATAGTTTTGGGGGTCATGTGTTTTCACATATTAGTTCATTTATGGACAATTCATTGCACCATTGTAGATACTTTCATGTGCCTGGAAGCTTAGCTCTTGAAGGTGCGTTTAATCATATTTCAAAGTTTGCTGGTGCTTTACTAGTGATGTTCTCTTCTGGGACCAGTACAAATGCTACTAGGGTAATAGCAGGTAACTTGGATGGTTGTGAACCTGGAACCTCCAGTTCTTCTGCACAAGTAAAACACATTACTTCAGGTAGACAAAAATTCAAAGGATTTCACTTCAGTTTTGGGCCAAAAGGAGAATGTAATAACCCCATGGATTTTGGTAAGATATCGGCTTTTGTAATGCAATTCCTACAAAGAGAAGCTGAAAGGCGATATTCATATTCCTTGCTCTCGTTAGCTACTGCTCTTGTACCACCTTTTGGCAACTTATCTTCAAACATGTTAGCTGTTTCATCGGCAAACACTGACGTTATGGATCAAAGGCCTTGTGAGGTTGGACGCCAAGGATGTGCTGGTCTACCTTTTCCCAATTTGGACTGGAGAATACATGCAGTGGAGCCTAGAACTGGCATTGAGTTCCCTATGGTTTTGGACAATATTTTAAGAGCAGGGAACAATTCCAGTTTAAGTTCAGAGGTCCTTGTGGGGACTGGATCCAGAACAATGACAATAATTAGAATAAAATCTCTGAAGCTCTATGCGTTTGGCTTTTATATTCATCCTTACTCTGTTTGCAAGAAATTGGGTCTAAAATATGCTTCTGTTTCGGCTGATGAACTAAACAAACGCCATGATTTTTATCAGGACCTTCTCAGGGAAGATATAGATATGACAGTTAGGCTTGTGGTTAGTTGCAATGGCATGAAAATCAATACTGTGAGAGATGCATTTGAGAAATCCCTTCGAGCCCGATTAGTGAAGACAAACCCAGAGACTGACTATCGTTGCATAACAACATTTGGTTCAAACTTCACACAAGATATTCCATTGCCAGCGGGAACAACAATTGATTTTCAACGAACAGCTGATGGAAAATTGATTACTAAAAGTAAGTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005504 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0008150 GO:0008152 GO:0008289 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0019752 GO:0031406 GO:0032787 GO:0033293 GO:0036094 GO:0043167 GO:0043168 GO:0043177 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chalcone_2

Protein Analysis

382

Amino Acids

42.5

Weight (kDa)

8.82

Isoelectric Point (pI)

32.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chalcone	PF02431	239 - 376	3.4e-06	Chalcone-flavanone isomerase
Chalcone_2	PF16035	243 - 378	9.7e-13	Chalcone isomerase like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005366)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26310 AT2G26310 AT2G26310 AT2G26310 AT2G26310
fragaria_vesca	FvH4_2g30870 FvH4_2g30870 FvH4_2g30870 FvH4_2g30870 FvH4_2g30870
malus_domestica	MD08G1072900.v1.1 MD15G1048900.v1.1
prunus_persica	Prupe.1G403200_v2.0.a1 Prupe.1G403200_v2.0.a1
pyrus_communis	pycom08g06030 pycom15g04770
rosa_chinensis	RchiOBHm_Chr6g0311981
rosa_laevigata	RLG00000010364
rosa_multiflora	Rmu_sc0005381.1_g000005
rosa_roxburghii	Rroxscaffold_7G00157170
rosa_rugosa	Rorug06G0391700 Rorug06G0391700 Rorug06G0391800 Rorug06G0391800
rosa_samantha	Rh6AG508300 Rh6BG519600 Rh6CG525400 Rh6DG511000
rosa_wichuraiana	Rw6G044250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	260
AccB7I	CCANNNNNTGG	1 cut(s)	509
AccI	GTMKAC	2 cut(s)	340, 607
AciI	CCGC	2 cut(s)	59, 1085
AclWI	GGATC	3 cut(s)	573, 738, 751
AcsI	RAATTY	1 cut(s)	347
AcuI	CTGAAG	3 cut(s)	318, 349, 800
AcyI	GRCGYC	1 cut(s)	589
AfaI	GTAC	3 cut(s)	50, 247, 501
AfiI	CCNNNNNNNGG	3 cut(s)	509, 656, 904
AflIII	ACRYGT	1 cut(s)	528
AgsI	TTSAA	6 cut(s)	179, 201, 352, 525, 1056, 1106
AhlI	ACTAGT	1 cut(s)	220
AjnI	CCWGG	2 cut(s)	160, 292
AluBI	AGCT	7 cut(s)	168, 173, 452, 488, 536, 784, 1115
AluI	AGCT	7 cut(s)	168, 173, 452, 488, 536, 784, 1115
Alw26I	GTCTC	1 cut(s)	1016
AlwI	GGATC	3 cut(s)	573, 738, 751
AlwNI	CAGNNNCTG	1 cut(s)	1025
AoxI	GGCC	2 cut(s)	374, 572
ApoI	RAATTY	1 cut(s)	347
AspS9I	GGNCC	4 cut(s)	240, 374, 727, 895
AvaII	GGWCC	3 cut(s)	240, 727, 895
BamHI	GGATCC	1 cut(s)	743
BanII	GRGCYC	1 cut(s)	1000
BbsI	GAAGAC	2 cut(s)	36, 1016
BccI	CCATC	2 cut(s)	275, 1112
BciT130I	CCWGG	2 cut(s)	162, 294
BcoDI	GTCTC	1 cut(s)	1016
BcuI	ACTAGT	1 cut(s)	220
BfaI	CTAG	3 cut(s)	221, 258, 651
BfuAI	ACCTGC	1 cut(s)	260
BlpI	GCTNAGC	1 cut(s)	169
Bme1390I	CCNGG	2 cut(s)	162, 294
Bme18I	GGWCC	3 cut(s)	240, 727, 895
BmgT120I	GGNCC	4 cut(s)	240, 374, 727, 895
BmiI	GGNNCC	5 cut(s)	66, 241, 298, 648, 745
BmrFI	CCNGG	2 cut(s)	162, 294
BmsI	GCATC	1 cut(s)	964
BpiI	GAAGAC	2 cut(s)	36, 1016
BpmI	CTGGAG	3 cut(s)	83, 286, 649
Bpu1102I	GCTNAGC	1 cut(s)	169
BsaBI	GATNNNNATC	1 cut(s)	888
BsaHI	GRCGYC	1 cut(s)	589
BsaJI	CCNNGG	2 cut(s)	399, 592
Bsc4I	CCNNNNNNNGG	3 cut(s)	509, 656, 904
Bse1I	ACTGG	6 cut(s)	243, 303, 632, 661, 711, 745
Bse3DI	GCAATG	3 cut(s)	131, 952, 1076
Bse8I	GATNNNNATC	1 cut(s)	888
BseBI	CCWGG	2 cut(s)	162, 294
BseDI	CCNNGG	2 cut(s)	399, 592
BseGI	GGATG	3 cut(s)	286, 602, 808
BseJI	GATNNNNATC	1 cut(s)	888
BseLI	CCNNNNNNNGG	3 cut(s)	509, 656, 904
BseMI	GCAATG	3 cut(s)	131, 952, 1076
BseMII	CTCAG	1 cut(s)	916
BseNI	ACTGG	6 cut(s)	243, 303, 632, 661, 711, 745
BsgI	GTGCAG	1 cut(s)	297
BshFI	GGCC	2 cut(s)	376, 574
BslFI	GGGAC	2 cut(s)	253, 751
BslI	CCNNNNNNNGG	3 cut(s)	509, 656, 904
BsmAI	GTCTC	1 cut(s)	1016
BsmFI	GGGAC	2 cut(s)	253, 751
BsnI	GGCC	2 cut(s)	376, 574
Bsp1286I	GDGCHC	1 cut(s)	1000
Bsp143I	GATC	2 cut(s)	565, 743
Bsp1720I	GCTNAGC	1 cut(s)	169
Bsp19I	CCATGG	1 cut(s)	399
BspACI	CCGC	2 cut(s)	59, 1085
BspANI	GGCC	2 cut(s)	376, 574
BspCNI	CTCAG	1 cut(s)	915
BspLI	GGNNCC	5 cut(s)	66, 241, 298, 648, 745
BspMI	ACCTGC	1 cut(s)	260
BspPI	GGATC	3 cut(s)	573, 738, 751
BsrDI	GCAATG	3 cut(s)	131, 952, 1076
BsrI	ACTGG	6 cut(s)	243, 303, 632, 661, 711, 745
BssECI	CCNNGG	2 cut(s)	399, 592
BssMI	GATC	2 cut(s)	565, 743
BssNI	GRCGYC	1 cut(s)	589
BssT1I	CCWWGG	2 cut(s)	399, 592
Bst2UI	CCWGG	2 cut(s)	162, 294
Bst4CI	ACNGT	2 cut(s)	925, 967
Bst6I	CTCTTC	1 cut(s)	238
BstACI	GRCGYC	1 cut(s)	589
BstC8I	GCNNGC	1 cut(s)	1083
BstDEI	CTNAG	2 cut(s)	169, 902
BstDSI	CCRYGG	1 cut(s)	399
BstF5I	GGATG	3 cut(s)	286, 602, 808
BstKTI	GATC	2 cut(s)	568, 746
BstMAI	GTCTC	1 cut(s)	1016
BstMBI	GATC	2 cut(s)	565, 743
BstNI	CCWGG	2 cut(s)	162, 294
BstNSI	RCATGY	2 cut(s)	532, 641
BstSCI	CCNGG	2 cut(s)	160, 292
BstV2I	GAAGAC	2 cut(s)	36, 1016
BstX2I	RGATCY	1 cut(s)	743
BstYI	RGATCY	1 cut(s)	743
BsuRI	GGCC	2 cut(s)	376, 574
BtgI	CCRYGG	1 cut(s)	399
BtsCI	GGATG	3 cut(s)	286, 602, 808
BtsI	GCAGTG	1 cut(s)	648
BtsIMutI	CAGTG	2 cut(s)	552, 648
BveI	ACCTGC	1 cut(s)	260
Cac8I	GCNNGC	1 cut(s)	1083
CaiI	CAGNNNCTG	1 cut(s)	1025
Cfr13I	GGNCC	4 cut(s)	240, 374, 727, 895
CseI	GACGC	1 cut(s)	597
Csp6I	GTAC	3 cut(s)	49, 246, 500
CviAII	CATG	7 cut(s)	95, 155, 400, 529, 638, 881, 952
CviQI	GTAC	3 cut(s)	49, 246, 500
DdeI	CTNAG	2 cut(s)	169, 902
DpnI	GATC	2 cut(s)	567, 745
DpnII	GATC	2 cut(s)	565, 743
Eam1104I	CTCTTC	1 cut(s)	238
EarI	CTCTTC	1 cut(s)	238
Eco130I	CCWWGG	2 cut(s)	399, 592
Eco147I	AGGCCT	1 cut(s)	574
Eco24I	GRGCYC	1 cut(s)	1000
Eco32I	GATATC	1 cut(s)	417
Eco47I	GGWCC	3 cut(s)	240, 727, 895
Eco57I	CTGAAG	3 cut(s)	318, 349, 800
EcoO109I	RGGNCCY	2 cut(s)	727, 895
EcoRII	CCWGG	2 cut(s)	160, 292
EcoRV	GATATC	1 cut(s)	417
EcoT14I	CCWWGG	2 cut(s)	399, 592
EcoT22I	ATGCAT	1 cut(s)	979
EcoT38I	GRGCYC	1 cut(s)	1000
ErhI	CCWWGG	2 cut(s)	399, 592
FaeI	CATG	7 cut(s)	98, 158, 403, 532, 641, 884, 955
FaqI	GGGAC	2 cut(s)	253, 751
FatI	CATG	7 cut(s)	94, 154, 399, 528, 637, 880, 951
FauI	CCCGC	1 cut(s)	1078
FblI	GTMKAC	2 cut(s)	340, 607
FokI	GGATG	3 cut(s)	293, 609, 795
FriOI	GRGCYC	1 cut(s)	1000
FspBI	CTAG	3 cut(s)	221, 258, 651
GsuI	CTGGAG	3 cut(s)	83, 286, 649
HaeIII	GGCC	2 cut(s)	376, 574
HgaI	GACGC	1 cut(s)	597
Hin1I	GRCGYC	1 cut(s)	589
Hin1II	CATG	7 cut(s)	98, 158, 403, 532, 641, 884, 955
HindIII	AAGCTT	1 cut(s)	166
Hpy166II	GTNNAC	3 cut(s)	290, 341, 608
Hpy188I	TCNGA	3 cut(s)	72, 724, 780
Hpy188III	TCNNGA	3 cut(s)	176, 747, 893
Hpy8I	GTNNAC	3 cut(s)	290, 341, 608
HpyAV	CCTTC	3 cut(s)	173, 908, 1001
HpyCH4III	ACNGT	2 cut(s)	925, 967
HpyCH4IV	ACGT	1 cut(s)	558
HpyCH4V	TGCA	9 cut(s)	79, 136, 314, 433, 641, 825, 945, 977, 1038
HpyF3I	CTNAG	2 cut(s)	169, 902
HpySE526I	ACGT	1 cut(s)	558
Hsp92I	GRCGYC	1 cut(s)	589
Hsp92II	CATG	7 cut(s)	98, 158, 403, 532, 641, 884, 955
Kzo9I	GATC	2 cut(s)	565, 743
LmnI	GCTCC	2 cut(s)	64, 646
LweI	GCATC	1 cut(s)	964
MaeI	CTAG	3 cut(s)	221, 258, 651
MaeII	ACGT	1 cut(s)	558
MaeIII	GTNAC	1 cut(s)	272
MalI	GATC	2 cut(s)	567, 745
MboI	GATC	2 cut(s)	565, 743
MboII	GAAGA	7 cut(s)	16, 36, 225, 300, 513, 920, 1021
MfeI	CAATTG	1 cut(s)	1095
MflI	RGATCY	1 cut(s)	743
MhlI	GDGCHC	1 cut(s)	1000
MmeI	TCCRAC	1 cut(s)	565
MnlI	CCTC	4 cut(s)	78, 310, 574, 718
Mph1103I	ATGCAT	1 cut(s)	979
MseI	TTAA	3 cut(s)	189, 692, 716
MspA1I	CMGCKG	3 cut(s)	61, 1085, 1115
MspR9I	CCNGG	2 cut(s)	162, 294
MunI	CAATTG	1 cut(s)	1095
MvaI	CCWGG	2 cut(s)	162, 294
NcoI	CCATGG	1 cut(s)	399
NdeII	GATC	2 cut(s)	565, 743
NlaIII	CATG	7 cut(s)	98, 158, 403, 532, 641, 884, 955
NlaIV	GGNNCC	5 cut(s)	66, 241, 298, 648, 745
NsiI	ATGCAT	1 cut(s)	979
NspI	RCATGY	2 cut(s)	532, 641
PceI	AGGCCT	1 cut(s)	574
PciI	ACATGT	1 cut(s)	528
PflMI	CCANNNNNTGG	1 cut(s)	509
PpuMI	RGGWCCY	2 cut(s)	727, 895
PscI	ACATGT	1 cut(s)	528
Psp5II	RGGWCCY	2 cut(s)	727, 895
Psp6I	CCWGG	2 cut(s)	160, 292
PspGI	CCWGG	2 cut(s)	160, 292
PspN4I	GGNNCC	5 cut(s)	66, 241, 298, 648, 745
PspPI	GGNCC	4 cut(s)	240, 374, 727, 895
PspPPI	RGGWCCY	2 cut(s)	727, 895
PstNI	CAGNNNCTG	1 cut(s)	1025
PsuI	RGATCY	1 cut(s)	743
PvuII	CAGCTG	1 cut(s)	1115
RsaI	GTAC	3 cut(s)	50, 247, 501
RsaNI	GTAC	3 cut(s)	49, 246, 500
SaqAI	TTAA	3 cut(s)	189, 692, 716
Sau3AI	GATC	2 cut(s)	565, 743
Sau96I	GGNCC	4 cut(s)	240, 374, 727, 895
ScrFI	CCNGG	2 cut(s)	162, 294
SduI	GDGCHC	1 cut(s)	1000
SfaNI	GCATC	1 cut(s)	964
SinI	GGWCC	3 cut(s)	240, 727, 895
SpeI	ACTAGT	1 cut(s)	220
SseBI	AGGCCT	1 cut(s)	574
SsiI	CCGC	2 cut(s)	59, 1085
SspI	AATATT	1 cut(s)	688
SspMI	CTAG	3 cut(s)	221, 258, 651
StuI	AGGCCT	1 cut(s)	574
StyD4I	CCNGG	2 cut(s)	160, 292
StyI	CCWWGG	2 cut(s)	399, 592
TaaI	ACNGT	2 cut(s)	925, 967
TaiI	ACGT	1 cut(s)	561
TaqI	TCGA	1 cut(s)	994
TatI	WGTACW	1 cut(s)	245
Tru1I	TTAA	3 cut(s)	189, 692, 716
Tru9I	TTAA	3 cut(s)	189, 692, 716
TscAI	CASTG	2 cut(s)	559, 648
TspDTI	ATGAA	9 cut(s)	17, 105, 120, 143, 456, 531, 797, 879, 968
TspRI	CASTG	2 cut(s)	559, 648
Van91I	CCANNNNNTGG	1 cut(s)	509
VpaK11BI	GGWCC	3 cut(s)	240, 727, 895
XapI	RAATTY	1 cut(s)	347
XceI	RCATGY	2 cut(s)	532, 641
XcmI	CCANNNNNNNNNTGG	1 cut(s)	599
XmiI	GTMKAC	2 cut(s)	340, 607
XspI	CTAG	3 cut(s)	221, 258, 651
Zsp2I	ATGCAT	1 cut(s)	979

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.