Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0005366

Physical Location & Seq

Genomic Coordinates Forward (+)

35512126 .. 35516522

Gene Structure 4397 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G403200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1278 bp

ATGAAGATTAAGCGGTTTGGGTTCATGGATCTTGATGAAGGGTCTCCACACAACTTTCCTGTTGAGCCTCTCATTTTGCATAGTTTTCGGGGTCATATGTTTTCACAGATCGGTTCGTTTATGGACAATTCATTGCACCAGTGTAGATACTTTCATGTCCCTGGAAGTTTAGCTCTCGAAGGAGCATTTAATCACATTTCTAAGCTTGCTGGTGCTTTACTATGTTTCTTCTCTTGTGGGCCCAATACAAATGCTACTAGAGAGATGGAGGGTAATTGGCATGGTTCTCAACCCGGATGCTCCAGATCTTCACATGTTAAACTTATTACTTCTGGTGGACAAAATCTTATAGGATTTCACTTCGGTTTTGCATCAAAAGGAGAATCTGCTAACTTAGTGCTTTTTGGTAAGATTTCGGCTTTTGTAATGCAATTCCTACAAAGAGAAGCTGAAAAGCTACATTCACATCCCATGCTCTCGTTAGCTTCTGGACTTGTACCACCTTTTGGCAGCTTATCTTCAAATGCACTAGCTGTTCCAGTGGAGAATACTGATACCATGGATCAAAGGCCGTGTGAGGTTGGACATCAAGGATGCGCAGGATTGCCATTTCCTGACTTGAACTGGAGAAGACATGCAGTGGAGCCTAGAACTGGCATTGAGTTTCCTATGATCTTGGACAATATTTTAACAGGAAATAATAATTCCAGTTTAAGTTCTGAGGTCCTTGTGGGAACTGGATCCAGAACAATGAAAATAATTAAAATAAAATCTCTGAAGATCTATGCGTTTGGTTTTTATGTTCATCCTAACTCTGTTTGCAAGAAATTGGGGTCAAAATATGCTTCTATTTCAGTAGACGAACTAAACAAACGCCGTGATTTTTATGAGGATCTTCTCAGGGCAGATATTGATATGACAGTTAGGCTTGTGGTTAGTTGCAATGGGATGAAAATCAATACTGTGAGAGATGCCTTTGAGAAATCCCTTCGAGCCCGATTGGTGAAGACAAACCCAGAGACTGACTTCCATTGCATAACAACATTCGGTTCAAACTTCACACAAGATATTCCGTTGCCAGCGGGAACAACGATTGATTTTCAACGAACAGCTGATGGAAAATTAATTACCAAAATTGAAGGTAATCAGATTGGAGCAGTCCACAGCAAGGATCTGTGCAGGGCTTTCTTTGACATGTACCTCGGAGATCTACCCGTGTCGGAGCAAAGTAAAGAAGAGATTGGCAGAAATGTTGCTAATATTATTAGACGTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005504 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0008150 GO:0008152 GO:0008289 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0019752 GO:0031406 GO:0032787 GO:0033293 GO:0036094 GO:0043167 GO:0043168 GO:0043177 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chalcone_2

Protein Analysis

426

Amino Acids

47.04

Weight (kDa)

8.43

Isoelectric Point (pI)

37.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005366)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26310 AT2G26310 AT2G26310 AT2G26310 AT2G26310
fragaria_vesca	FvH4_2g30870 FvH4_2g30870 FvH4_2g30870 FvH4_2g30870 FvH4_2g30870
malus_domestica	MD08G1072900.v1.1 MD15G1048900.v1.1
prunus_persica	Prupe.1G403200_v2.0.a1 Prupe.1G403200_v2.0.a1
pyrus_communis	pycom08g06030 pycom15g04770
rosa_chinensis	RchiOBHm_Chr6g0311981
rosa_laevigata	RLG00000010364
rosa_multiflora	Rmu_sc0005381.1_g000005
rosa_roxburghii	Rroxscaffold_7G00157170
rosa_rugosa	Rorug06G0391700 Rorug06G0391700 Rorug06G0391800 Rorug06G0391800
rosa_samantha	Rh6AG508300 Rh6BG519600 Rh6CG525400 Rh6DG511000
rosa_wichuraiana	Rw6G044250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	598
AccB7I	CCANNNNNTGG	1 cut(s)	506
AccI	GTMKAC	1 cut(s)	858
AciI	CCGC	2 cut(s)	13, 1082
AclWI	GGATC	6 cut(s)	36, 570, 735, 748, 900, 1179
AcuI	CTGAAG	1 cut(s)	797
AfaI	GTAC	2 cut(s)	498, 1199
AfiI	CCNNNNNNNGG	3 cut(s)	506, 653, 1168
AflIII	ACRYGT	2 cut(s)	313, 1194
AgsI	TTSAA	5 cut(s)	522, 622, 1053, 1103, 1139
AjnI	CCWGG	1 cut(s)	160
AluBI	AGCT	8 cut(s)	173, 205, 449, 457, 485, 513, 533, 1112
AluI	AGCT	8 cut(s)	173, 205, 449, 457, 485, 513, 533, 1112
Alw26I	GTCTC	2 cut(s)	48, 1013
AlwI	GGATC	6 cut(s)	36, 570, 735, 748, 900, 1179
AlwNI	CAGNNNCTG	1 cut(s)	1022
AoxI	GGCC	2 cut(s)	239, 569
ApaI	GGGCCC	1 cut(s)	243
ApeKI	GCWGC	1 cut(s)	510
AseI	ATTAAT	1 cut(s)	1124
AspLEI	GCGC	1 cut(s)	599
AspS9I	GGNCC	3 cut(s)	239, 240, 724
AsuC2I	CCSGG	1 cut(s)	294
AsuHPI	GGTGA	1 cut(s)	1015
AvaII	GGWCC	1 cut(s)	724
BaeGI	GKGCMC	1 cut(s)	243
BamHI	GGATCC	1 cut(s)	740
BanII	GRGCYC	2 cut(s)	243, 997
BbsI	GAAGAC	2 cut(s)	637, 1013
BbvI	GCAGC	1 cut(s)	522
BccI	CCATC	2 cut(s)	259, 1109
BceAI	ACGGC	2 cut(s)	556, 861
BcgI	CGANNNNNNTGC	2 cut(s)	68, 102
BciT130I	CCWGG	1 cut(s)	162
BcnI	CCSGG	1 cut(s)	294
BcoDI	GTCTC	2 cut(s)	48, 1013
BfaI	CTAG	3 cut(s)	258, 530, 648
BglII	AGATCT	3 cut(s)	305, 780, 1207
BisI	GCNGC	1 cut(s)	511
BlsI	GCNGC	1 cut(s)	512
Bme1390I	CCNGG	2 cut(s)	162, 294
Bme18I	GGWCC	1 cut(s)	724
BmgT120I	GGNCC	3 cut(s)	239, 240, 724
BmiI	GGNNCC	3 cut(s)	241, 645, 742
BmrFI	CCNGG	2 cut(s)	162, 294
BmsI	GCATC	4 cut(s)	287, 380, 584, 961
BpiI	GAAGAC	2 cut(s)	637, 1013
BpmI	CTGGAG	2 cut(s)	286, 646
BpuMI	CCSGG	1 cut(s)	294
BsaBI	GATNNNNATC	1 cut(s)	953
BsaI	GGTCTC	1 cut(s)	48
BsaJI	CCNNGG	3 cut(s)	160, 558, 1201
Bsc4I	CCNNNNNNNGG	3 cut(s)	506, 653, 1168
Bse1I	ACTGG	6 cut(s)	139, 539, 629, 658, 708, 742
Bse3DI	GCAATG	3 cut(s)	131, 949, 1030
Bse8I	GATNNNNATC	1 cut(s)	953
BseBI	CCWGG	1 cut(s)	162
BseDI	CCNNGG	3 cut(s)	160, 558, 1201
BseGI	GGATG	5 cut(s)	302, 466, 599, 805, 954
BseJI	GATNNNNATC	1 cut(s)	953
BseLI	CCNNNNNNNGG	3 cut(s)	506, 653, 1168
BseMI	GCAATG	3 cut(s)	131, 949, 1030
BseMII	CTCAG	2 cut(s)	711, 913
BseNI	ACTGG	6 cut(s)	139, 539, 629, 658, 708, 742
BseSI	GKGCMC	1 cut(s)	243
BseXI	GCAGC	1 cut(s)	522
BsgI	GTGCAG	1 cut(s)	1198
BshFI	GGCC	2 cut(s)	241, 571
BsiSI	CCGG	1 cut(s)	294
BslFI	GGGAC	1 cut(s)	143
BslI	CCNNNNNNNGG	3 cut(s)	506, 653, 1168
BsmAI	GTCTC	2 cut(s)	48, 1013
BsmFI	GGGAC	1 cut(s)	143
BsnI	GGCC	2 cut(s)	241, 571
Bso31I	GGTCTC	1 cut(s)	48
Bsp120I	GGGCCC	1 cut(s)	239
Bsp1286I	GDGCHC	2 cut(s)	243, 997
Bsp19I	CCATGG	1 cut(s)	558
BspACI	CCGC	2 cut(s)	13, 1082
BspANI	GGCC	2 cut(s)	241, 571
BspCNI	CTCAG	2 cut(s)	712, 912
BspLI	GGNNCC	3 cut(s)	241, 645, 742
BspPI	GGATC	6 cut(s)	36, 570, 735, 748, 900, 1179
BspTNI	GGTCTC	1 cut(s)	48
BsrDI	GCAATG	3 cut(s)	131, 949, 1030
BsrI	ACTGG	6 cut(s)	139, 539, 629, 658, 708, 742
BssECI	CCNNGG	3 cut(s)	160, 558, 1201
BssT1I	CCWWGG	1 cut(s)	558
Bst2UI	CCWGG	1 cut(s)	162
Bst4CI	ACNGT	2 cut(s)	922, 964
Bst6I	CTCTTC	1 cut(s)	1230
BstC8I	GCNNGC	2 cut(s)	207, 1080
BstDEI	CTNAG	4 cut(s)	201, 394, 720, 899
BstDSI	CCRYGG	1 cut(s)	558
BstF5I	GGATG	5 cut(s)	302, 466, 599, 805, 954
BstHHI	GCGC	1 cut(s)	599
BstMAI	GTCTC	2 cut(s)	48, 1013
BstNI	CCWGG	1 cut(s)	162
BstNSI	RCATGY	3 cut(s)	317, 638, 1198
BstSCI	CCNGG	2 cut(s)	160, 292
BstSLI	GKGCMC	1 cut(s)	243
BstV1I	GCAGC	1 cut(s)	522
BstV2I	GAAGAC	2 cut(s)	637, 1013
BstX2I	RGATCY	7 cut(s)	28, 305, 740, 780, 892, 1171, 1207
BstYI	RGATCY	7 cut(s)	28, 305, 740, 780, 892, 1171, 1207
BsuRI	GGCC	2 cut(s)	241, 571
BtgI	CCRYGG	1 cut(s)	558
BtsCI	GGATG	5 cut(s)	302, 466, 599, 805, 954
BtsI	GCAGTG	1 cut(s)	645
BtsIMutI	CAGTG	3 cut(s)	146, 546, 645
Cac8I	GCNNGC	2 cut(s)	207, 1080
CaiI	CAGNNNCTG	1 cut(s)	1022
CfoI	GCGC	1 cut(s)	599
Cfr13I	GGNCC	3 cut(s)	239, 240, 724
Csp6I	GTAC	2 cut(s)	497, 1198
CviAII	CATG	8 cut(s)	25, 155, 281, 314, 472, 559, 635, 1195
CviQI	GTAC	2 cut(s)	497, 1198
DdeI	CTNAG	4 cut(s)	201, 394, 720, 899
Eam1104I	CTCTTC	1 cut(s)	1230
EarI	CTCTTC	1 cut(s)	1230
Eco130I	CCWWGG	1 cut(s)	558
Eco24I	GRGCYC	2 cut(s)	243, 997
Eco31I	GGTCTC	1 cut(s)	48
Eco47I	GGWCC	1 cut(s)	724
Eco57I	CTGAAG	1 cut(s)	797
EcoO109I	RGGNCCY	1 cut(s)	724
EcoRII	CCWGG	1 cut(s)	160
EcoT14I	CCWWGG	1 cut(s)	558
EcoT38I	GRGCYC	2 cut(s)	243, 997
ErhI	CCWWGG	1 cut(s)	558
FaeI	CATG	8 cut(s)	28, 158, 284, 317, 475, 562, 638, 1198
FaqI	GGGAC	1 cut(s)	143
FatI	CATG	8 cut(s)	24, 154, 280, 313, 471, 558, 634, 1194
FauI	CCCGC	1 cut(s)	1075
FauNDI	CATATG	1 cut(s)	96
FblI	GTMKAC	1 cut(s)	858
Fnu4HI	GCNGC	1 cut(s)	511
FokI	GGATG	5 cut(s)	309, 453, 606, 792, 961
FriOI	GRGCYC	2 cut(s)	243, 997
Fsp4HI	GCNGC	1 cut(s)	511
FspBI	CTAG	3 cut(s)	258, 530, 648
FspI	TGCGCA	1 cut(s)	598
GlaI	GCGC	1 cut(s)	598
GluI	GCNGC	1 cut(s)	511
GsuI	CTGGAG	2 cut(s)	286, 646
HaeIII	GGCC	2 cut(s)	241, 571
HapII	CCGG	1 cut(s)	294
HhaI	GCGC	1 cut(s)	599
Hin1II	CATG	8 cut(s)	28, 158, 284, 317, 475, 562, 638, 1198
Hin6I	GCGC	1 cut(s)	597
HinP1I	GCGC	1 cut(s)	597
HindIII	AAGCTT	1 cut(s)	203
HinfI	GANTC	1 cut(s)	383
HpaII	CCGG	1 cut(s)	294
HphI	GGTGA	1 cut(s)	1015
Hpy166II	GTNNAC	3 cut(s)	338, 859, 1162
Hpy188I	TCNGA	5 cut(s)	721, 777, 1149, 1205, 1222
Hpy188III	TCNNGA	6 cut(s)	32, 176, 303, 489, 614, 744
Hpy8I	GTNNAC	3 cut(s)	338, 859, 1162
HpyAV	CCTTC	4 cut(s)	32, 173, 998, 1133
HpyCH4III	ACNGT	2 cut(s)	922, 964
HpyCH4IV	ACGT	1 cut(s)	1270
HpyF3I	CTNAG	4 cut(s)	201, 394, 720, 899
HpySE526I	ACGT	1 cut(s)	1270
Hsp92II	CATG	8 cut(s)	28, 158, 284, 317, 475, 562, 638, 1198
HspAI	GCGC	1 cut(s)	597
LmnI	GCTCC	5 cut(s)	182, 305, 643, 1154, 1222
Lsp1109I	GCAGC	1 cut(s)	522
LweI	GCATC	4 cut(s)	287, 380, 584, 961
MaeI	CTAG	3 cut(s)	258, 530, 648
MaeII	ACGT	1 cut(s)	1270
MboII	GAAGA	9 cut(s)	16, 220, 300, 510, 642, 790, 887, 1018, 1247
MflI	RGATCY	7 cut(s)	28, 305, 740, 780, 892, 1171, 1207
MhlI	GDGCHC	2 cut(s)	243, 997
MluCI	AATT	9 cut(s)	127, 274, 431, 703, 759, 827, 1121, 1125, 1134
MmeI	TCCRAC	2 cut(s)	562, 1200
MnlI	CCTC	6 cut(s)	78, 262, 571, 715, 883, 1211
MseI	TTAA	7 cut(s)	9, 189, 318, 689, 713, 762, 1124
MspA1I	CMGCKG	2 cut(s)	1082, 1112
MspI	CCGG	1 cut(s)	294
MspR9I	CCNGG	2 cut(s)	162, 294
MvaI	CCWGG	1 cut(s)	162
NciI	CCSGG	1 cut(s)	294
NcoI	CCATGG	1 cut(s)	558
NdeI	CATATG	1 cut(s)	96
NlaIII	CATG	8 cut(s)	28, 158, 284, 317, 475, 562, 638, 1198
NlaIV	GGNNCC	3 cut(s)	241, 645, 742
NsbI	TGCGCA	1 cut(s)	598
NspI	RCATGY	3 cut(s)	317, 638, 1198
PciI	ACATGT	2 cut(s)	313, 1194
PfeI	GAWTC	1 cut(s)	383
PflMI	CCANNNNNTGG	1 cut(s)	506
PkrI	GCNGC	1 cut(s)	512
PpuMI	RGGWCCY	1 cut(s)	724
PscI	ACATGT	2 cut(s)	313, 1194
PshBI	ATTAAT	1 cut(s)	1124
Psp5II	RGGWCCY	1 cut(s)	724
Psp6I	CCWGG	1 cut(s)	160
PspGI	CCWGG	1 cut(s)	160
PspN4I	GGNNCC	3 cut(s)	241, 645, 742
PspOMI	GGGCCC	1 cut(s)	239
PspPI	GGNCC	3 cut(s)	239, 240, 724
PspPPI	RGGWCCY	1 cut(s)	724
PstNI	CAGNNNCTG	1 cut(s)	1022
PsuI	RGATCY	7 cut(s)	28, 305, 740, 780, 892, 1171, 1207
PvuII	CAGCTG	1 cut(s)	1112
RsaI	GTAC	2 cut(s)	498, 1199
RsaNI	GTAC	2 cut(s)	497, 1198
SaqAI	TTAA	7 cut(s)	9, 189, 318, 689, 713, 762, 1124
SatI	GCNGC	1 cut(s)	511
Sau96I	GGNCC	3 cut(s)	239, 240, 724
ScrFI	CCNGG	2 cut(s)	162, 294
SduI	GDGCHC	2 cut(s)	243, 997
SfaNI	GCATC	4 cut(s)	287, 380, 584, 961
SinI	GGWCC	1 cut(s)	724
Sse9I	AATT	9 cut(s)	127, 274, 431, 703, 759, 827, 1121, 1125, 1134
SsiI	CCGC	2 cut(s)	13, 1082
SspI	AATATT	2 cut(s)	685, 1261
SspMI	CTAG	3 cut(s)	258, 530, 648
StyD4I	CCNGG	2 cut(s)	160, 292
StyI	CCWWGG	1 cut(s)	558
TaaI	ACNGT	2 cut(s)	922, 964
TaiI	ACGT	1 cut(s)	1273
TaqI	TCGA	2 cut(s)	177, 991
TasI	AATT	9 cut(s)	127, 274, 431, 703, 759, 827, 1121, 1125, 1134
TfiI	GAWTC	1 cut(s)	383
Tru1I	TTAA	7 cut(s)	9, 189, 318, 689, 713, 762, 1124
Tru9I	TTAA	7 cut(s)	9, 189, 318, 689, 713, 762, 1124
TscAI	CASTG	3 cut(s)	146, 546, 645
TseI	GCWGC	1 cut(s)	510
TspDTI	ATGAA	8 cut(s)	13, 17, 51, 120, 143, 767, 794, 965
TspGWI	ACGGA	1 cut(s)	1062
TspRI	CASTG	3 cut(s)	146, 546, 645
Van91I	CCANNNNNTGG	1 cut(s)	506
VpaK11BI	GGWCC	1 cut(s)	724
VspI	ATTAAT	1 cut(s)	1124
XceI	RCATGY	3 cut(s)	317, 638, 1198
XmiI	GTMKAC	1 cut(s)	858
XspI	CTAG	3 cut(s)	258, 530, 648

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.