Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0005366

Physical Location & Seq

Genomic Coordinates Forward (+)

3326060 .. 3330100

Gene Structure 4041 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1048900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

ATGAGGATTAAGCGGTTCGGGTTCATGGATTTCGATGAAGGCTCTCCATACAATTCACATTTTAGTTCATTTGCCGATAATTCATTGCAACGGTGTAGATACTTTCATGTTCCCGGAAGTTTAGCTCTTGAAGGAGCATTTAACCACATTTCTAAACTTGCTGGTTCTTTACTATTCTTCTTCTCTAGTGGACCCAATACAAATGCTACTAGAGATATAGGGGGTAATTTGCATGATTCTGAACCTGGAAGCTCCACGTCTTACCCACAAGTTAAACATTTTACTTCTGGTCGACATAATCTTAGAGGATTTCACTTTGGATTTGCATCAAGAGGAGAATCTGCTAATGCAGTGGTTTTTGGAAAGATTTCGGCTTTTGTAATGCAATTACTACACAGAGAAGCTGAAAAGCTACATTCACATCCCTTGCTCTCGTTAGCTGCTGGACTTGTACCTCCTTTCGGCAGCTTATCTTCAAATGTACTAGCTGTTCCATTGGAGACTACGGATGTCTTGGATCAAAGGCCTTGTGAGGTTGGGCACCACAGATGTGCAGGATTACCAATTCCCGACTTGAACTGGAGAAGACATGCAGTGGAACCTATTACTGGCACTGAGTTTCCTATGATTTTGGACGACGTTTTGACAAGGGAGAGTAATTCCAGTTTAAGTTCAGAGATCCTTGTGGGAACTGGATCCAAAACAATGACAATAATCAAAATAAAATCTCTGAAGGTCTATGCATTTGGGTTCTATATCCATCCTCACTCTGTTTGCAAGAAATTGGGGCAAAAATATGCTTCCATTTCAGTAGATGAACTAAACAAGTGCCATGATTTCTATGAAGATCTTCTCAGGGCGGATATTGATATGACAGTTAGGCTTGTGGTTAATTGCAACGGGATGAAAATCAATACTGTGAGAGATGCCTTTGAGAAATCCCTTCGAGCTCGATTGGTGAAGGTGAACCCAGAGACTGACTTTCATTGCATAAGAACATTTGGTTCAAATTTCACACAAGATATTCCTTTGCCAGTGGGAACGACAATTGATTTCCAACGCACAGCTGATGGAAACTTAATTACTAAAATTGAAGGTAATCAGATTGGAGCAGTCCATAGCAAGGATCTATGCAGGGCCTTCTTTGACATGTACCTGGGTGCTGTCCCCGTGTCAGAGCAAACAAAAGAAGAGATTGGCAGAAACGTCGCCAATATTATTCAAAGTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005504 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0008150 GO:0008152 GO:0008289 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0019752 GO:0031406 GO:0032787 GO:0033293 GO:0036094 GO:0043167 GO:0043168 GO:0043177 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chalcone_2

Protein Analysis

411

Amino Acids

45.4

Weight (kDa)

7.29

Isoelectric Point (pI)

33.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chalcone	PF02431	219 - 402	8.6e-08	Chalcone-flavanone isomerase
Chalcone_2	PF16035	228 - 399	2.1e-21	Chalcone isomerase like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005366)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26310 AT2G26310 AT2G26310 AT2G26310 AT2G26310
fragaria_vesca	FvH4_2g30870 FvH4_2g30870 FvH4_2g30870 FvH4_2g30870 FvH4_2g30870
malus_domestica	MD08G1072900.v1.1 MD15G1048900.v1.1
prunus_persica	Prupe.1G403200_v2.0.a1 Prupe.1G403200_v2.0.a1
pyrus_communis	pycom08g06030 pycom15g04770
rosa_chinensis	RchiOBHm_Chr6g0311981
rosa_laevigata	RLG00000010364
rosa_multiflora	Rmu_sc0005381.1_g000005
rosa_roxburghii	Rroxscaffold_7G00157170
rosa_rugosa	Rorug06G0391700 Rorug06G0391700 Rorug06G0391800 Rorug06G0391800
rosa_samantha	Rh6AG508300 Rh6BG519600 Rh6CG525400 Rh6DG511000
rosa_wichuraiana	Rw6G044250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	540
AccI	GTMKAC	1 cut(s)	292
AciI	CCGC	2 cut(s)	13, 860
AclWI	GGATC	5 cut(s)	525, 673, 690, 703, 1134
AcsI	RAATTY	1 cut(s)	1009
AcuI	CTGAAG	1 cut(s)	752
AfaI	GTAC	3 cut(s)	453, 483, 1154
AfiI	CCNNNNNNNGG	3 cut(s)	461, 608, 1123
AflIII	ACRYGT	1 cut(s)	1149
AgsI	TTSAA	6 cut(s)	131, 477, 577, 1008, 1094, 1223
AjiI	CACGTC	1 cut(s)	258
AjnI	CCWGG	2 cut(s)	244, 1155
AleI	CACNNNNGTG	1 cut(s)	549
AluBI	AGCT	9 cut(s)	125, 252, 404, 412, 440, 468, 488, 950, 1067
AluI	AGCT	9 cut(s)	125, 252, 404, 412, 440, 468, 488, 950, 1067
Alw21I	GWGCWC	1 cut(s)	952
Alw26I	GTCTC	2 cut(s)	494, 968
AlwI	GGATC	5 cut(s)	525, 673, 690, 703, 1134
AlwNI	CAGNNNCTG	1 cut(s)	977
AoxI	GGCC	2 cut(s)	524, 1137
ApeKI	GCWGC	2 cut(s)	440, 465
ApoI	RAATTY	1 cut(s)	1009
Asp700I	GAANNNNTTC	2 cut(s)	367, 849
AspS9I	GGNCC	2 cut(s)	191, 1137
AsuC2I	CCSGG	1 cut(s)	114
AsuHPI	GGTGA	2 cut(s)	970, 976
AvaII	GGWCC	1 cut(s)	191
BaeGI	GKGCMC	1 cut(s)	543
BamHI	GGATCC	1 cut(s)	695
BanI	GGYRCC	1 cut(s)	540
BanII	GRGCYC	1 cut(s)	952
BbsI	GAAGAC	1 cut(s)	592
Bbv12I	GWGCWC	1 cut(s)	952
BbvI	GCAGC	2 cut(s)	427, 477
BccI	CCATC	2 cut(s)	768, 1064
BcgI	CGANNNNNNTGC	2 cut(s)	1189, 1223
BciT130I	CCWGG	2 cut(s)	246, 1157
BcnI	CCSGG	1 cut(s)	114
BcoDI	GTCTC	2 cut(s)	494, 968
BfaI	CTAG	3 cut(s)	186, 210, 485
BglII	AGATCT	1 cut(s)	847
BisI	GCNGC	2 cut(s)	441, 466
BlsI	GCNGC	2 cut(s)	442, 467
Bme1390I	CCNGG	3 cut(s)	114, 246, 1157
Bme18I	GGWCC	1 cut(s)	191
BmgBI	CACGTC	1 cut(s)	258
BmgT120I	GGNCC	2 cut(s)	191, 1137
BmiI	GGNNCC	4 cut(s)	193, 542, 600, 697
BmrFI	CCNGG	3 cut(s)	114, 246, 1157
BmsI	GCATC	2 cut(s)	335, 916
BpiI	GAAGAC	1 cut(s)	592
BpmI	CTGGAG	1 cut(s)	601
BpuMI	CCSGG	1 cut(s)	114
BsaBI	GATNNNNATC	2 cut(s)	325, 908
BsaJI	CCNNGG	1 cut(s)	1156
Bsc4I	CCNNNNNNNGG	3 cut(s)	461, 608, 1123
Bse1I	ACTGG	5 cut(s)	584, 613, 663, 697, 1034
Bse3DI	GCAATG	2 cut(s)	83, 985
Bse8I	GATNNNNATC	2 cut(s)	325, 908
BseBI	CCWGG	2 cut(s)	246, 1157
BseDI	CCNNGG	1 cut(s)	1156
BseGI	GGATG	4 cut(s)	421, 514, 760, 909
BseJI	GATNNNNATC	2 cut(s)	325, 908
BseLI	CCNNNNNNNGG	3 cut(s)	461, 608, 1123
BseMI	GCAATG	2 cut(s)	83, 985
BseMII	CTCAG	2 cut(s)	606, 868
BseNI	ACTGG	5 cut(s)	584, 613, 663, 697, 1034
BseRI	GAGGAG	1 cut(s)	348
BseSI	GKGCMC	1 cut(s)	543
BseXI	GCAGC	2 cut(s)	427, 477
BsgI	GTGCAG	1 cut(s)	573
BshFI	GGCC	2 cut(s)	526, 1139
BshNI	GGYRCC	1 cut(s)	540
BsiHKAI	GWGCWC	1 cut(s)	952
BsiSI	CCGG	1 cut(s)	114
BslFI	GGGAC	1 cut(s)	1151
BslI	CCNNNNNNNGG	3 cut(s)	461, 608, 1123
BsmAI	GTCTC	2 cut(s)	494, 968
BsmFI	GGGAC	1 cut(s)	1151
BsnI	GGCC	2 cut(s)	526, 1139
Bsp1286I	GDGCHC	2 cut(s)	543, 952
Bsp143I	GATC	5 cut(s)	517, 678, 695, 847, 1126
BspACI	CCGC	2 cut(s)	13, 860
BspANI	GGCC	2 cut(s)	526, 1139
BspCNI	CTCAG	2 cut(s)	607, 867
BspLI	GGNNCC	4 cut(s)	193, 542, 600, 697
BspPI	GGATC	5 cut(s)	525, 673, 690, 703, 1134
BspT107I	GGYRCC	1 cut(s)	540
BsrDI	GCAATG	2 cut(s)	83, 985
BsrI	ACTGG	5 cut(s)	584, 613, 663, 697, 1034
BssECI	CCNNGG	1 cut(s)	1156
BssMI	GATC	5 cut(s)	517, 678, 695, 847, 1126
Bst2UI	CCWGG	2 cut(s)	246, 1157
Bst4CI	ACNGT	3 cut(s)	93, 877, 919
Bst6I	CTCTTC	1 cut(s)	1185
BstDEI	CTNAG	3 cut(s)	302, 615, 854
BstF5I	GGATG	4 cut(s)	421, 514, 760, 909
BstKTI	GATC	5 cut(s)	520, 681, 698, 850, 1129
BstMAI	GTCTC	2 cut(s)	494, 968
BstMBI	GATC	5 cut(s)	517, 678, 695, 847, 1126
BstNI	CCWGG	2 cut(s)	246, 1157
BstNSI	RCATGY	2 cut(s)	593, 1153
BstSCI	CCNGG	3 cut(s)	112, 244, 1155
BstSLI	GKGCMC	1 cut(s)	543
BstV1I	GCAGC	2 cut(s)	427, 477
BstV2I	GAAGAC	1 cut(s)	592
BstX2I	RGATCY	4 cut(s)	678, 695, 847, 1126
BstYI	RGATCY	4 cut(s)	678, 695, 847, 1126
BsuRI	GGCC	2 cut(s)	526, 1139
BtrI	CACGTC	1 cut(s)	258
BtsCI	GGATG	4 cut(s)	421, 514, 760, 909
BtsI	GCAGTG	2 cut(s)	357, 600
BtsIMutI	CAGTG	4 cut(s)	357, 600, 612, 1041
CaiI	CAGNNNCTG	1 cut(s)	977
Cfr13I	GGNCC	2 cut(s)	191, 1137
Csp6I	GTAC	3 cut(s)	452, 482, 1153
CviAII	CATG	6 cut(s)	25, 107, 233, 590, 833, 1150
CviQI	GTAC	3 cut(s)	452, 482, 1153
DdeI	CTNAG	3 cut(s)	302, 615, 854
DpnI	GATC	5 cut(s)	519, 680, 697, 849, 1128
DpnII	GATC	5 cut(s)	517, 678, 695, 847, 1126
Eam1104I	CTCTTC	1 cut(s)	1185
EarI	CTCTTC	1 cut(s)	1185
EciI	GGCGGA	1 cut(s)	875
Ecl136II	GAGCTC	1 cut(s)	950
Eco147I	AGGCCT	1 cut(s)	526
Eco24I	GRGCYC	1 cut(s)	952
Eco47I	GGWCC	1 cut(s)	191
Eco53kI	GAGCTC	1 cut(s)	950
Eco57I	CTGAAG	1 cut(s)	752
EcoICRI	GAGCTC	1 cut(s)	950
EcoO109I	RGGNCCY	1 cut(s)	1137
EcoRII	CCWGG	2 cut(s)	244, 1155
EcoT22I	ATGCAT	1 cut(s)	745
EcoT38I	GRGCYC	1 cut(s)	952
FaeI	CATG	6 cut(s)	28, 110, 236, 593, 836, 1153
FaqI	GGGAC	1 cut(s)	1151
FatI	CATG	6 cut(s)	24, 106, 232, 589, 832, 1149
FblI	GTMKAC	1 cut(s)	292
Fnu4HI	GCNGC	2 cut(s)	441, 466
FokI	GGATG	4 cut(s)	408, 521, 747, 916
FriOI	GRGCYC	1 cut(s)	952
Fsp4HI	GCNGC	2 cut(s)	441, 466
FspBI	CTAG	3 cut(s)	186, 210, 485
GluI	GCNGC	2 cut(s)	441, 466
GsuI	CTGGAG	1 cut(s)	601
HaeIII	GGCC	2 cut(s)	526, 1139
HapII	CCGG	1 cut(s)	114
Hin1II	CATG	6 cut(s)	28, 110, 236, 593, 836, 1153
HincII	GTYRAC	1 cut(s)	293
HindII	GTYRAC	1 cut(s)	293
HinfI	GANTC	2 cut(s)	236, 338
HpaII	CCGG	1 cut(s)	114
HphI	GGTGA	2 cut(s)	970, 976
Hpy166II	GTNNAC	3 cut(s)	191, 293, 967
Hpy188I	TCNGA	5 cut(s)	241, 676, 732, 1104, 1177
Hpy188III	TCNNGA	3 cut(s)	128, 330, 569
Hpy8I	GTNNAC	3 cut(s)	191, 293, 967
Hpy99I	CGWCG	2 cut(s)	641, 1211
HpyAV	CCTTC	7 cut(s)	32, 125, 727, 953, 955, 1088, 1150
HpyCH4III	ACNGT	3 cut(s)	93, 877, 919
HpyCH4IV	ACGT	3 cut(s)	257, 639, 1206
HpyF3I	CTNAG	3 cut(s)	302, 615, 854
HpySE526I	ACGT	3 cut(s)	257, 639, 1206
Hsp92II	CATG	6 cut(s)	28, 110, 236, 593, 836, 1153
Kzo9I	GATC	5 cut(s)	517, 678, 695, 847, 1126
LmnI	GCTCC	3 cut(s)	134, 257, 1109
Lsp1109I	GCAGC	2 cut(s)	427, 477
LweI	GCATC	2 cut(s)	335, 916
MaeI	CTAG	3 cut(s)	186, 210, 485
MaeII	ACGT	3 cut(s)	257, 639, 1206
MalI	GATC	5 cut(s)	519, 680, 697, 849, 1128
MboI	GATC	5 cut(s)	517, 678, 695, 847, 1126
MboII	GAAGA	7 cut(s)	169, 172, 465, 597, 842, 857, 1202
MfeI	CAATTG	1 cut(s)	1047
MflI	RGATCY	4 cut(s)	678, 695, 847, 1126
MhlI	GDGCHC	2 cut(s)	543, 952
MmeI	TCCRAC	1 cut(s)	1081
MnlI	CCTC	5 cut(s)	299, 326, 465, 526, 774
Mph1103I	ATGCAT	1 cut(s)	745
MroXI	GAANNNNTTC	2 cut(s)	367, 849
MseI	TTAA	6 cut(s)	9, 141, 273, 668, 891, 1079
MslI	CAYNNNNRTG	1 cut(s)	549
MspA1I	CMGCKG	1 cut(s)	1067
MspI	CCGG	1 cut(s)	114
MspR9I	CCNGG	3 cut(s)	114, 246, 1157
MunI	CAATTG	1 cut(s)	1047
MvaI	CCWGG	2 cut(s)	246, 1157
NciI	CCSGG	1 cut(s)	114
NdeII	GATC	5 cut(s)	517, 678, 695, 847, 1126
NlaIII	CATG	6 cut(s)	28, 110, 236, 593, 836, 1153
NlaIV	GGNNCC	4 cut(s)	193, 542, 600, 697
NsiI	ATGCAT	1 cut(s)	745
NspI	RCATGY	2 cut(s)	593, 1153
OliI	CACNNNNGTG	1 cut(s)	549
PceI	AGGCCT	1 cut(s)	526
PciI	ACATGT	1 cut(s)	1149
PdmI	GAANNNNTTC	2 cut(s)	367, 849
PfeI	GAWTC	2 cut(s)	236, 338
PfoI	TCCNGGA	1 cut(s)	112
PkrI	GCNGC	2 cut(s)	442, 467
PscI	ACATGT	1 cut(s)	1149
Psp124BI	GAGCTC	1 cut(s)	952
Psp6I	CCWGG	2 cut(s)	244, 1155
PspGI	CCWGG	2 cut(s)	244, 1155
PspN4I	GGNNCC	4 cut(s)	193, 542, 600, 697
PspPI	GGNCC	2 cut(s)	191, 1137
PsrI	GAACNNNNNNTAC	2 cut(s)	474, 506
PstNI	CAGNNNCTG	1 cut(s)	977
PsuI	RGATCY	4 cut(s)	678, 695, 847, 1126
PvuII	CAGCTG	1 cut(s)	1067
RsaI	GTAC	3 cut(s)	453, 483, 1154
RsaNI	GTAC	3 cut(s)	452, 482, 1153
RseI	CAYNNNNRTG	1 cut(s)	549
SacI	GAGCTC	1 cut(s)	952
SalI	GTCGAC	1 cut(s)	291
SaqAI	TTAA	6 cut(s)	9, 141, 273, 668, 891, 1079
SatI	GCNGC	2 cut(s)	441, 466
Sau3AI	GATC	5 cut(s)	517, 678, 695, 847, 1126
Sau96I	GGNCC	2 cut(s)	191, 1137
ScrFI	CCNGG	3 cut(s)	114, 246, 1157
SduI	GDGCHC	2 cut(s)	543, 952
SfaNI	GCATC	2 cut(s)	335, 916
SinI	GGWCC	1 cut(s)	191
SmiMI	CAYNNNNRTG	1 cut(s)	549
SseBI	AGGCCT	1 cut(s)	526
SsiI	CCGC	2 cut(s)	13, 860
SspI	AATATT	1 cut(s)	1216
SspMI	CTAG	3 cut(s)	186, 210, 485
SstI	GAGCTC	1 cut(s)	952
StuI	AGGCCT	1 cut(s)	526
StyD4I	CCNGG	3 cut(s)	112, 244, 1155
TaaI	ACNGT	3 cut(s)	93, 877, 919
TaiI	ACGT	3 cut(s)	260, 642, 1209
TaqI	TCGA	4 cut(s)	33, 292, 946, 952
TatI	WGTACW	1 cut(s)	481
TfiI	GAWTC	2 cut(s)	236, 338
Tru1I	TTAA	6 cut(s)	9, 141, 273, 668, 891, 1079
Tru9I	TTAA	6 cut(s)	9, 141, 273, 668, 891, 1079
TscAI	CASTG	4 cut(s)	357, 600, 619, 1041
TseI	GCWGC	2 cut(s)	440, 465
TspDTI	ATGAA	9 cut(s)	13, 51, 57, 72, 95, 831, 858, 920, 974
TspGWI	ACGGA	1 cut(s)	521
TspRI	CASTG	4 cut(s)	357, 600, 619, 1041
VpaK11BI	GGWCC	1 cut(s)	191
XapI	RAATTY	1 cut(s)	1009
XceI	RCATGY	2 cut(s)	593, 1153
XmiI	GTMKAC	1 cut(s)	292
XmnI	GAANNNNTTC	2 cut(s)	367, 849
XspI	CTAG	3 cut(s)	186, 210, 485
Zsp2I	ATGCAT	1 cut(s)	745

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.