Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0005366

Physical Location & Seq

Genomic Coordinates Forward (+)

23802725 .. 23807645

Gene Structure 4921 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g30870.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1311 bp

ATGAAGAATAGCTGGTTTGGGTTAGGGGATTTTGATGACGGCTCTTCCTACAACTTTCCGCTGGAGCCTCTGATTTTGTATAGTCTTCGGGGAAATGTGTTTTCGCATATTAGTTCATTTAGGGACAATTCGTTGCACCACTATAGATACTTTCATGGGCCTGGAAGCTTAGCTCTTGAAGGCGCTTTTAATCATGTTTCAAAGTTTGCGGGTGCTTTGCTAGTGATGTTCTCTTCTGGGAACAGTACAAATGCTACTCAGGCAATAGCAGGTAACTTGGATGGTTGTGAGCCTGGATGCTCCAGTTCTTCTGCTCGAGTAAAACACGTTACTTCAAGTAGACAAAAATTTAAAGGGTTTCACTTCAGTTTTGGGCCAAAAGGAGAATCTAATAATCCCATCGATTTTGGTAAGATATCGGCTTCTGTAATGCAATTCCTACAAAGAGAAGCTGAAACGCGATATTCATATTCCTTGCTCTCGTTAGCTACTGCACTTGTACCACCTTTTGGCAACTTGAACTTCTCTTCTTTGGTAATTCCTACCAGATCTTCAAACATGTTAGCTGTGTCGACGTCAAACACTGATATTATGGATCAAAGGCCTTGTGAGGTTGGGCGTCAAGGATGTGCTGGTCTACCTTTTCCCAATTTGGACTGGAGAATACATGCAGTGGAGCCCAGAACTGGTATCGAGTTCCCTATGGTTTTGGACAATATATTAACAGCAGGGAACAATTCAAGTTTAAATTCAGAGGTCCTTGTGGGAACTGGATCCAGAACAATGACAATAATTAGAATAAAATCTCTGAAGCTCTATGCGTTTGGCTTTTATATTCATCCTCACTCTGTTTGCAAGAAATTGGGTCCAAAATACGCTTCTGTTTCGCTTGATGAACTAAACAAACGCCATGATTTTTATCAGGACCTTCTCAGGGAAGATATTGATATGACAGTTAGACTTGTAGTTAGCTGCAATGGGATGAAAGTCAATACTGTGAGAGATGCCTTCGAGAAATCCCTTCGAGCCCGATTAGTGAAGACAAACCCAGAGACTGACTTCCGTTGCATAACAACATTTGGTTCGAAGTTCACACAAGATATTCCACTGCCAGCGGGAACAACAATTGATTTCCAACGAACAGCTGATGGGAAATTGATTACTAAAATTGGAGATAATCAGATTGGAGCAGTCCAAAGCAAGGAACTGTGCAGGGCTTTCTTTGACATGTACTTGGGAGATGTTCCTGTGTCAGAGCAAACAAAAGAAGAGATTGGCAGAAATGTTGCTAGTATAATTAGGCGTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005504 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0008150 GO:0008152 GO:0008289 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0019752 GO:0031406 GO:0032787 GO:0033293 GO:0036094 GO:0043167 GO:0043168 GO:0043177 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chalcone_2

Protein Analysis

437

Amino Acids

48.21

Weight (kDa)

8.76

Isoelectric Point (pI)

33.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chalcone	PF02431	237 - 417	7.1e-09	Chalcone-flavanone isomerase
Chalcone_2	PF16035	243 - 415	1.7e-21	Chalcone isomerase like
Chalcone_3	PF16036	292 - 414	1.3e-06	Chalcone isomerase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005366)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26310 AT2G26310 AT2G26310 AT2G26310 AT2G26310
fragaria_vesca	FvH4_2g30870 FvH4_2g30870 FvH4_2g30870 FvH4_2g30870 FvH4_2g30870
malus_domestica	MD08G1072900.v1.1 MD15G1048900.v1.1
prunus_persica	Prupe.1G403200_v2.0.a1 Prupe.1G403200_v2.0.a1
pyrus_communis	pycom08g06030 pycom15g04770
rosa_chinensis	RchiOBHm_Chr6g0311981
rosa_laevigata	RLG00000010364
rosa_multiflora	Rmu_sc0005381.1_g000005
rosa_roxburghii	Rroxscaffold_7G00157170
rosa_rugosa	Rorug06G0391700 Rorug06G0391700 Rorug06G0391800 Rorug06G0391800
rosa_samantha	Rh6AG508300 Rh6BG519600 Rh6CG525400 Rh6DG511000
rosa_wichuraiana	Rw6G044250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	578
Acc36I	ACCTGC	1 cut(s)	260
AccB7I	CCANNNNNTGG	1 cut(s)	509
AccI	GTMKAC	3 cut(s)	340, 572, 637
AccII	CGCG	1 cut(s)	460
AciI	CCGC	3 cut(s)	59, 209, 1115
AclWI	GGATC	3 cut(s)	603, 768, 781
AcsI	RAATTY	2 cut(s)	347, 748
AcuI	CTGAAG	2 cut(s)	349, 830
AcyI	GRCGYC	2 cut(s)	575, 619
AfaI	GTAC	3 cut(s)	247, 501, 1232
AfiI	CCNNNNNNNGG	4 cut(s)	509, 686, 934, 1201
AflIII	ACRYGT	3 cut(s)	325, 558, 1227
AgsI	TTSAA	6 cut(s)	179, 201, 336, 520, 555, 741
AjnI	CCWGG	2 cut(s)	160, 292
AjuI	GAANNNNNNNTTGG	2 cut(s)	862, 894
AluBI	AGCT	9 cut(s)	12, 168, 173, 452, 488, 566, 814, 972, 1145
AluI	AGCT	9 cut(s)	12, 168, 173, 452, 488, 566, 814, 972, 1145
Alw26I	GTCTC	1 cut(s)	1046
AlwI	GGATC	3 cut(s)	603, 768, 781
AlwNI	CAGNNNCTG	1 cut(s)	1055
Ama87I	CYCGRG	1 cut(s)	315
AoxI	GGCC	3 cut(s)	158, 374, 602
ApeKI	GCWGC	1 cut(s)	972
ApoI	RAATTY	2 cut(s)	347, 748
AspLEI	GCGC	1 cut(s)	185
AspS9I	GGNCC	5 cut(s)	158, 374, 757, 866, 925
AsuII	TTCGAA	1 cut(s)	1085
AvaI	CYCGRG	1 cut(s)	315
AvaII	GGWCC	3 cut(s)	757, 866, 925
BamHI	GGATCC	1 cut(s)	773
BanII	GRGCYC	2 cut(s)	681, 1030
BbsI	GAAGAC	2 cut(s)	77, 1046
BbvI	GCAGC	1 cut(s)	959
BccI	CCATC	3 cut(s)	275, 407, 1142
BceAI	ACGGC	1 cut(s)	55
BciT130I	CCWGG	2 cut(s)	162, 294
BcoDI	GTCTC	1 cut(s)	1046
BfaI	CTAG	2 cut(s)	221, 1290
BfmI	CTRYAG	1 cut(s)	142
BfoI	RGCGCY	1 cut(s)	186
BfuAI	ACCTGC	1 cut(s)	260
BglII	AGATCT	1 cut(s)	548
BisI	GCNGC	1 cut(s)	973
BlpI	GCTNAGC	1 cut(s)	169
BlsI	GCNGC	1 cut(s)	974
Bme1390I	CCNGG	2 cut(s)	162, 294
Bme18I	GGWCC	3 cut(s)	757, 866, 925
BmeT110I	CYCGRG	1 cut(s)	315
BmgT120I	GGNCC	5 cut(s)	158, 374, 757, 866, 925
BmiI	GGNNCC	4 cut(s)	66, 678, 775, 867
BmrFI	CCNGG	2 cut(s)	162, 294
BmsI	GCATC	2 cut(s)	287, 994
BpiI	GAAGAC	2 cut(s)	77, 1046
BpmI	CTGGAG	3 cut(s)	83, 286, 679
Bpu1102I	GCTNAGC	1 cut(s)	169
Bpu14I	TTCGAA	1 cut(s)	1085
Bsa29I	ATCGAT	1 cut(s)	402
BsaBI	GATNNNNATC	1 cut(s)	918
BsaHI	GRCGYC	2 cut(s)	575, 619
Bsc4I	CCNNNNNNNGG	4 cut(s)	509, 686, 934, 1201
Bse1I	ACTGG	4 cut(s)	303, 662, 691, 775
Bse3DI	GCAATG	1 cut(s)	982
Bse8I	GATNNNNATC	1 cut(s)	918
BseBI	CCWGG	2 cut(s)	162, 294
BseCI	ATCGAT	1 cut(s)	402
BseGI	GGATG	5 cut(s)	286, 302, 632, 838, 987
BseJI	GATNNNNATC	1 cut(s)	918
BseLI	CCNNNNNNNGG	4 cut(s)	509, 686, 934, 1201
BseMI	GCAATG	1 cut(s)	982
BseMII	CTCAG	2 cut(s)	272, 946
BseNI	ACTGG	4 cut(s)	303, 662, 691, 775
BseXI	GCAGC	1 cut(s)	959
BsgI	GTGCAG	2 cut(s)	477, 1231
Bsh1236I	CGCG	1 cut(s)	460
BshFI	GGCC	3 cut(s)	160, 376, 604
BshVI	ATCGAT	1 cut(s)	402
BsiHKCI	CYCGRG	1 cut(s)	315
BslFI	GGGAC	1 cut(s)	137
BslI	CCNNNNNNNGG	4 cut(s)	509, 686, 934, 1201
BsmAI	GTCTC	1 cut(s)	1046
BsmFI	GGGAC	1 cut(s)	137
BsnI	GGCC	3 cut(s)	160, 376, 604
BsoBI	CYCGRG	1 cut(s)	315
Bsp119I	TTCGAA	1 cut(s)	1085
Bsp1286I	GDGCHC	2 cut(s)	681, 1030
Bsp143I	GATC	3 cut(s)	548, 595, 773
Bsp1720I	GCTNAGC	1 cut(s)	169
BspACI	CCGC	3 cut(s)	59, 209, 1115
BspANI	GGCC	3 cut(s)	160, 376, 604
BspCNI	CTCAG	2 cut(s)	271, 945
BspDI	ATCGAT	1 cut(s)	402
BspFNI	CGCG	1 cut(s)	460
BspLI	GGNNCC	4 cut(s)	66, 678, 775, 867
BspMI	ACCTGC	1 cut(s)	260
BspPI	GGATC	3 cut(s)	603, 768, 781
BspQI	GCTCTTC	1 cut(s)	49
BspT104I	TTCGAA	1 cut(s)	1085
BsrDI	GCAATG	1 cut(s)	982
BsrI	ACTGG	4 cut(s)	303, 662, 691, 775
BssMI	GATC	3 cut(s)	548, 595, 773
BssNI	GRCGYC	2 cut(s)	575, 619
Bst2UI	CCWGG	2 cut(s)	162, 294
Bst4CI	ACNGT	4 cut(s)	245, 955, 997, 1209
Bst6I	CTCTTC	4 cut(s)	49, 238, 532, 1263
BstACI	GRCGYC	2 cut(s)	575, 619
BstBI	TTCGAA	1 cut(s)	1085
BstC8I	GCNNGC	1 cut(s)	1113
BstDEI	CTNAG	3 cut(s)	169, 258, 932
BstF5I	GGATG	5 cut(s)	286, 302, 632, 838, 987
BstFNI	CGCG	1 cut(s)	460
BstH2I	RGCGCY	1 cut(s)	186
BstHHI	GCGC	1 cut(s)	185
BstKTI	GATC	3 cut(s)	551, 598, 776
BstMAI	GTCTC	1 cut(s)	1046
BstMBI	GATC	3 cut(s)	548, 595, 773
BstMWI	GCNNNNNNNGC	1 cut(s)	260
BstNI	CCWGG	2 cut(s)	162, 294
BstNSI	RCATGY	3 cut(s)	562, 671, 1231
BstSCI	CCNGG	2 cut(s)	160, 292
BstSFI	CTRYAG	1 cut(s)	142
BstUI	CGCG	1 cut(s)	460
BstV1I	GCAGC	1 cut(s)	959
BstV2I	GAAGAC	2 cut(s)	77, 1046
BstX2I	RGATCY	2 cut(s)	548, 773
BstYI	RGATCY	2 cut(s)	548, 773
Bsu15I	ATCGAT	1 cut(s)	402
BsuRI	GGCC	3 cut(s)	160, 376, 604
BsuTUI	ATCGAT	1 cut(s)	402
BtsCI	GGATG	5 cut(s)	286, 302, 632, 838, 987
BtsI	GCAGTG	2 cut(s)	678, 1106
BtsIMutI	CAGTG	3 cut(s)	582, 678, 1106
BveI	ACCTGC	1 cut(s)	260
Cac8I	GCNNGC	1 cut(s)	1113
CaiI	CAGNNNCTG	1 cut(s)	1055
CfoI	GCGC	1 cut(s)	185
Cfr13I	GGNCC	5 cut(s)	158, 374, 757, 866, 925
ClaI	ATCGAT	1 cut(s)	402
CseI	GACGC	1 cut(s)	608
Csp6I	GTAC	3 cut(s)	246, 500, 1231
CviAII	CATG	6 cut(s)	155, 194, 559, 668, 911, 1228
CviQI	GTAC	3 cut(s)	246, 500, 1231
DdeI	CTNAG	3 cut(s)	169, 258, 932
DpnI	GATC	3 cut(s)	550, 597, 775
DpnII	GATC	3 cut(s)	548, 595, 773
DraI	TTTAAA	2 cut(s)	352, 747
Eam1104I	CTCTTC	4 cut(s)	49, 238, 532, 1263
EarI	CTCTTC	4 cut(s)	49, 238, 532, 1263
Eco147I	AGGCCT	1 cut(s)	604
Eco24I	GRGCYC	2 cut(s)	681, 1030
Eco32I	GATATC	1 cut(s)	417
Eco47I	GGWCC	3 cut(s)	757, 866, 925
Eco57I	CTGAAG	2 cut(s)	349, 830
Eco88I	CYCGRG	1 cut(s)	315
EcoO109I	RGGNCCY	2 cut(s)	757, 925
EcoRII	CCWGG	2 cut(s)	160, 292
EcoRV	GATATC	1 cut(s)	417
EcoT38I	GRGCYC	2 cut(s)	681, 1030
FaeI	CATG	6 cut(s)	158, 197, 562, 671, 914, 1231
FaqI	GGGAC	1 cut(s)	137
FatI	CATG	6 cut(s)	154, 193, 558, 667, 910, 1227
FauI	CCCGC	2 cut(s)	202, 1108
FblI	GTMKAC	3 cut(s)	340, 572, 637
Fnu4HI	GCNGC	1 cut(s)	973
FokI	GGATG	5 cut(s)	293, 309, 639, 825, 994
FriOI	GRGCYC	2 cut(s)	681, 1030
Fsp4HI	GCNGC	1 cut(s)	973
FspBI	CTAG	2 cut(s)	221, 1290
GlaI	GCGC	1 cut(s)	184
GluI	GCNGC	1 cut(s)	973
GsuI	CTGGAG	3 cut(s)	83, 286, 679
HaeII	RGCGCY	1 cut(s)	186
HaeIII	GGCC	3 cut(s)	160, 376, 604
HgaI	GACGC	1 cut(s)	608
HhaI	GCGC	1 cut(s)	185
Hin1I	GRCGYC	2 cut(s)	575, 619
Hin1II	CATG	6 cut(s)	158, 197, 562, 671, 914, 1231
Hin6I	GCGC	1 cut(s)	183
HinP1I	GCGC	1 cut(s)	183
HincII	GTYRAC	1 cut(s)	573
HindII	GTYRAC	1 cut(s)	573
HindIII	AAGCTT	1 cut(s)	166
HinfI	GANTC	1 cut(s)	386
Hpy166II	GTNNAC	4 cut(s)	341, 573, 638, 1092
Hpy188I	TCNGA	5 cut(s)	72, 754, 810, 1182, 1255
Hpy188III	TCNNGA	4 cut(s)	176, 777, 923, 1012
Hpy8I	GTNNAC	4 cut(s)	341, 573, 638, 1092
Hpy99I	CGWCG	1 cut(s)	577
HpyAV	CCTTC	4 cut(s)	173, 938, 1018, 1031
HpyCH4III	ACNGT	4 cut(s)	245, 955, 997, 1209
HpyCH4IV	ACGT	2 cut(s)	327, 575
HpyCH4V	TGCA	8 cut(s)	136, 433, 494, 671, 855, 975, 1068, 1212
HpyF10VI	GCNNNNNNNGC	1 cut(s)	260
HpyF3I	CTNAG	3 cut(s)	169, 258, 932
HpySE526I	ACGT	2 cut(s)	327, 575
Hsp92I	GRCGYC	2 cut(s)	575, 619
Hsp92II	CATG	6 cut(s)	158, 197, 562, 671, 914, 1231
HspAI	GCGC	1 cut(s)	183
Kzo9I	GATC	3 cut(s)	548, 595, 773
LguI	GCTCTTC	1 cut(s)	49
LmnI	GCTCC	4 cut(s)	64, 305, 676, 1187
Lsp1109I	GCAGC	1 cut(s)	959
LweI	GCATC	2 cut(s)	287, 994
MaeI	CTAG	2 cut(s)	221, 1290
MaeII	ACGT	2 cut(s)	327, 575
MaeIII	GTNAC	2 cut(s)	272, 328
MalI	GATC	3 cut(s)	550, 597, 775
MboI	GATC	3 cut(s)	548, 595, 773
MfeI	CAATTG	1 cut(s)	1125
MflI	RGATCY	2 cut(s)	548, 773
MhlI	GDGCHC	2 cut(s)	681, 1030
MmeI	TCCRAC	1 cut(s)	1159
MnlI	CCTC	4 cut(s)	78, 604, 748, 852
MseI	TTAA	4 cut(s)	189, 351, 722, 746
MspA1I	CMGCKG	3 cut(s)	61, 1115, 1145
MspR9I	CCNGG	2 cut(s)	162, 294
MunI	CAATTG	1 cut(s)	1125
MvaI	CCWGG	2 cut(s)	162, 294
MvnI	CGCG	1 cut(s)	460
MwoI	GCNNNNNNNGC	1 cut(s)	260
NdeII	GATC	3 cut(s)	548, 595, 773
NlaIII	CATG	6 cut(s)	158, 197, 562, 671, 914, 1231
NlaIV	GGNNCC	4 cut(s)	66, 678, 775, 867
NspI	RCATGY	3 cut(s)	562, 671, 1231
NspV	TTCGAA	1 cut(s)	1085
PaeR7I	CTCGAG	1 cut(s)	315
PceI	AGGCCT	1 cut(s)	604
PciI	ACATGT	2 cut(s)	558, 1227
PciSI	GCTCTTC	1 cut(s)	49
PfeI	GAWTC	1 cut(s)	386
PflMI	CCANNNNNTGG	1 cut(s)	509
PkrI	GCNGC	1 cut(s)	974
PpuMI	RGGWCCY	2 cut(s)	757, 925
PscI	ACATGT	2 cut(s)	558, 1227
Psp5II	RGGWCCY	2 cut(s)	757, 925
Psp6I	CCWGG	2 cut(s)	160, 292
PspGI	CCWGG	2 cut(s)	160, 292
PspN4I	GGNNCC	4 cut(s)	66, 678, 775, 867
PspPI	GGNCC	5 cut(s)	158, 374, 757, 866, 925
PspPPI	RGGWCCY	2 cut(s)	757, 925
PspXI	VCTCGAGB	1 cut(s)	315
PstNI	CAGNNNCTG	1 cut(s)	1055
PsuI	RGATCY	2 cut(s)	548, 773
PvuII	CAGCTG	1 cut(s)	1145
RsaI	GTAC	3 cut(s)	247, 501, 1232
RsaNI	GTAC	3 cut(s)	246, 500, 1231
SalI	GTCGAC	1 cut(s)	571
SapI	GCTCTTC	1 cut(s)	49
SaqAI	TTAA	4 cut(s)	189, 351, 722, 746
SatI	GCNGC	1 cut(s)	973
Sau3AI	GATC	3 cut(s)	548, 595, 773
Sau96I	GGNCC	5 cut(s)	158, 374, 757, 866, 925
ScrFI	CCNGG	2 cut(s)	162, 294
SduI	GDGCHC	2 cut(s)	681, 1030
SfaNI	GCATC	2 cut(s)	287, 994
SfcI	CTRYAG	1 cut(s)	142
Sfr274I	CTCGAG	1 cut(s)	315
SfuI	TTCGAA	1 cut(s)	1085
SinI	GGWCC	3 cut(s)	757, 866, 925
SlaI	CTCGAG	1 cut(s)	315
SmlI	CTYRAG	1 cut(s)	315
SmoI	CTYRAG	1 cut(s)	315
SseBI	AGGCCT	1 cut(s)	604
SsiI	CCGC	3 cut(s)	59, 209, 1115
SspMI	CTAG	2 cut(s)	221, 1290
StuI	AGGCCT	1 cut(s)	604
StyD4I	CCNGG	2 cut(s)	160, 292
TaaI	ACNGT	4 cut(s)	245, 955, 997, 1209
TaiI	ACGT	2 cut(s)	330, 578
TaqI	TCGA	7 cut(s)	316, 402, 572, 693, 1011, 1024, 1085
TatI	WGTACW	2 cut(s)	245, 1230
TfiI	GAWTC	1 cut(s)	386
Tru1I	TTAA	4 cut(s)	189, 351, 722, 746
Tru9I	TTAA	4 cut(s)	189, 351, 722, 746
TscAI	CASTG	3 cut(s)	589, 678, 1113
TseI	GCWGC	1 cut(s)	972
TspDTI	ATGAA	7 cut(s)	17, 105, 143, 456, 827, 909, 998
TspGWI	ACGGA	1 cut(s)	1052
TspRI	CASTG	3 cut(s)	589, 678, 1113
Van91I	CCANNNNNTGG	1 cut(s)	509
VpaK11BI	GGWCC	3 cut(s)	757, 866, 925
XapI	RAATTY	2 cut(s)	347, 748
XceI	RCATGY	3 cut(s)	562, 671, 1231
XhoI	CTCGAG	1 cut(s)	315
XmiI	GTMKAC	3 cut(s)	340, 572, 637
XspI	CTAG	2 cut(s)	221, 1290
ZraI	GACGTC	1 cut(s)	576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.