Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009026

Physical Location & Seq

Genomic Coordinates Reverse (-)

11303455 .. 11307010

Gene Structure 3556 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G26580.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGCTAACTCTGTGATGGCAACCGAACAGCTCTGCTACATCCCTTGCAACTTTTGCAACATAATTCTTGCGGTGAATGTCCCATGCAGCAGCCTGTTCGACATCGTGACCGTCCGATGCGGTCACTGCACCAATCTGTGGTCTGTAAACATGGCAGCTGCTCTTCAGTCGCTTTCACGCCCTAATTTCCAGGCAACAAACTATGCAGTACCAGAGTATGGATCCTCCTCAAGAAGCCACACAAAAATCCCTTCAAGAATTTCAACTCGTACCATAACTGAGCAACGGATTGTAAACCGTCCTCCGGAGAAGCGGCAGCGAGTACCTTCTGCGTACAATCAATTCATAAAAGAGGAAATTCAGAGGATTAAGGCGAATAATCCAGACATAAGCCACAGAGAAGCATTCAGCACTGCTGCCAAGAATTGGGCACACTTTCCTCATATTCACTTTGGTCTAATGCTGGAGAGTAACAAGCAAGCTAAGATAGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009798 GO:0009889 GO:0009943 GO:0009944 GO:0009955 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048509 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065001 GO:0065007 GO:0080090 GO:0140110 GO:1902183 GO:1903506 GO:2000024 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YABBY

Protein Analysis

164

Amino Acids

18.5

Weight (kDa)

9.47

Isoelectric Point (pI)

52.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
YABBY_N	PF24868	7 - 59	1.4e-29	YABBY, N-terminal
YABBY	PF04690	91 - 152	1.9e-38	YABBY protein, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009026)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26580 AT2G26580
fragaria_vesca	FvH4_1g03040 FvH4_1g03040 FvH4_1g03040 FvH4_1g03040 FvH4_1g03040
malus_domestica	MD02G1029700.v1.1 MD15G1171100.v1.1
prunus_persica	Prupe.7G245200_v2.0.a1 Prupe.7G245200_v2.0.a1
pyrus_communis	pycom02g02470
rosa_chinensis	RchiOBHm_Chr2g0088171
rosa_laevigata	RLG00000015928
rosa_multiflora	Rmu_sc0003275.1_g000065
rosa_roxburghii	Rroxscaffold_2G00152870
rosa_rugosa	Rorug01G0481400
rosa_samantha	Rh2AG036500 Rh2BG035700 Rh2CG036800 Rh2DG036200
rosa_wichuraiana	Rw2G002870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	138, 218, 426
AccIII	TCCGGA	1 cut(s)	304
AciI	CCGC	3 cut(s)	71, 120, 313
AclWI	GGATC	2 cut(s)	216, 229
AcsI	RAATTY	2 cut(s)	258, 357
AcuI	CTGAAG	1 cut(s)	149
AfaI	GTAC	4 cut(s)	210, 271, 324, 335
AfiI	CCNNNNNNNGG	4 cut(s)	138, 218, 304, 426
AgsI	TTSAA	2 cut(s)	255, 264
AjnI	CCWGG	1 cut(s)	189
AluBI	AGCT	3 cut(s)	31, 158, 482
AluI	AGCT	3 cut(s)	31, 158, 482
AlwI	GGATC	2 cut(s)	216, 229
Aor13HI	TCCGGA	1 cut(s)	304
ApeKI	GCWGC	6 cut(s)	87, 90, 155, 158, 316, 416
ApoI	RAATTY	2 cut(s)	258, 357
AsuHPI	GGTGA	1 cut(s)	85
BaeGI	GKGCMC	1 cut(s)	433
BamHI	GGATCC	1 cut(s)	221
BbvI	GCAGC	6 cut(s)	99, 102, 145, 167, 328, 403
BccI	CCATC	1 cut(s)	10
BcgI	CGANNNNNNTGC	2 cut(s)	79, 113
BciT130I	CCWGG	1 cut(s)	191
BisI	GCNGC	7 cut(s)	88, 91, 156, 159, 314, 317, 417
BlsI	GCNGC	7 cut(s)	89, 92, 157, 160, 315, 318, 418
Bme1390I	CCNGG	1 cut(s)	191
BmiI	GGNNCC	1 cut(s)	223
BmrFI	CCNGG	1 cut(s)	191
BmsI	GCATC	1 cut(s)	107
BpmI	CTGGAG	1 cut(s)	485
BpuEI	CTTGAG	1 cut(s)	214
BsaWI	WCCGGW	1 cut(s)	304
Bsc4I	CCNNNNNNNGG	4 cut(s)	138, 218, 304, 426
BseAI	TCCGGA	1 cut(s)	304
BseBI	CCWGG	1 cut(s)	191
BseGI	GGATG	1 cut(s)	39
BseLI	CCNNNNNNNGG	4 cut(s)	138, 218, 304, 426
BseMII	CTCAG	1 cut(s)	270
BseRI	GAGGAG	1 cut(s)	217
BseSI	GKGCMC	1 cut(s)	433
BseXI	GCAGC	6 cut(s)	99, 102, 145, 167, 328, 403
BsgI	GTGCAG	1 cut(s)	112
BsiSI	CCGG	1 cut(s)	305
BslFI	GGGAC	1 cut(s)	65
BslI	CCNNNNNNNGG	4 cut(s)	138, 218, 304, 426
BsmFI	GGGAC	1 cut(s)	65
BsmI	GAATGC	1 cut(s)	404
Bsp1286I	GDGCHC	1 cut(s)	433
Bsp13I	TCCGGA	1 cut(s)	304
Bsp143I	GATC	1 cut(s)	221
BspACI	CCGC	3 cut(s)	71, 120, 313
BspCNI	CTCAG	1 cut(s)	271
BspEI	TCCGGA	1 cut(s)	304
BspLI	GGNNCC	1 cut(s)	223
BspPI	GGATC	2 cut(s)	216, 229
BspQI	GCTCTTC	1 cut(s)	168
BssMI	GATC	1 cut(s)	221
Bst2UI	CCWGG	1 cut(s)	191
Bst4CI	ACNGT	2 cut(s)	112, 299
Bst6I	CTCTTC	1 cut(s)	168
BstAPI	GCANNNNNTGC	1 cut(s)	54
BstC8I	GCNNGC	1 cut(s)	480
BstDEI	CTNAG	2 cut(s)	279, 483
BstF5I	GGATG	1 cut(s)	39
BstKTI	GATC	1 cut(s)	224
BstMBI	GATC	1 cut(s)	221
BstMWI	GCNNNNNNNGC	3 cut(s)	54, 126, 488
BstNI	CCWGG	1 cut(s)	191
BstSCI	CCNGG	1 cut(s)	189
BstSLI	GKGCMC	1 cut(s)	433
BstV1I	GCAGC	6 cut(s)	99, 102, 145, 167, 328, 403
BstX2I	RGATCY	1 cut(s)	221
BstYI	RGATCY	1 cut(s)	221
BtsCI	GGATG	1 cut(s)	39
BtsI	GCAGTG	2 cut(s)	124, 411
BtsIMutI	CAGTG	2 cut(s)	124, 411
Cac8I	GCNNGC	1 cut(s)	480
Csp6I	GTAC	4 cut(s)	209, 270, 323, 334
CviAII	CATG	2 cut(s)	84, 151
CviJI	RGCY	8 cut(s)	5, 31, 93, 158, 237, 393, 482, 491
CviKI_1	RGCY	8 cut(s)	5, 31, 93, 158, 237, 393, 482, 491
CviQI	GTAC	4 cut(s)	209, 270, 323, 334
DdeI	CTNAG	2 cut(s)	279, 483
DpnI	GATC	1 cut(s)	223
DpnII	GATC	1 cut(s)	221
Eam1104I	CTCTTC	1 cut(s)	168
EarI	CTCTTC	1 cut(s)	168
Eco57I	CTGAAG	1 cut(s)	149
EcoRII	CCWGG	1 cut(s)	189
FaeI	CATG	2 cut(s)	87, 154
FaiI	YATR	9 cut(s)	62, 85, 152, 204, 219, 275, 347, 389, 444
FaqI	GGGAC	1 cut(s)	65
FatI	CATG	2 cut(s)	83, 150
Fnu4HI	GCNGC	7 cut(s)	88, 91, 156, 159, 314, 317, 417
FokI	GGATG	1 cut(s)	26
Fsp4HI	GCNGC	7 cut(s)	88, 91, 156, 159, 314, 317, 417
GluI	GCNGC	7 cut(s)	88, 91, 156, 159, 314, 317, 417
GsuI	CTGGAG	1 cut(s)	485
HapII	CCGG	1 cut(s)	305
Hin1II	CATG	2 cut(s)	87, 154
HpaII	CCGG	1 cut(s)	305
HphI	GGTGA	1 cut(s)	85
Hpy166II	GTNNAC	2 cut(s)	148, 295
Hpy188I	TCNGA	2 cut(s)	116, 363
Hpy188III	TCNNGA	5 cut(s)	106, 231, 255, 305, 383
Hpy8I	GTNNAC	2 cut(s)	148, 295
HpyAV	CCTTC	2 cut(s)	261, 336
HpyCH4III	ACNGT	2 cut(s)	112, 299
HpyCH4V	TGCA	5 cut(s)	48, 57, 87, 129, 206
HpyF10VI	GCNNNNNNNGC	3 cut(s)	54, 126, 488
HpyF3I	CTNAG	2 cut(s)	279, 483
Hsp92II	CATG	2 cut(s)	87, 154
Kpn2I	TCCGGA	1 cut(s)	304
Kzo9I	GATC	1 cut(s)	221
LguI	GCTCTTC	1 cut(s)	168
LpnPI	CCDG	7 cut(s)	107, 176, 203, 225, 318, 396, 449
Lsp1109I	GCAGC	6 cut(s)	99, 102, 145, 167, 328, 403
LweI	GCATC	1 cut(s)	107
MaeIII	GTNAC	3 cut(s)	106, 122, 470
MalI	GATC	1 cut(s)	223
MboI	GATC	1 cut(s)	221
MboII	GAAGA	1 cut(s)	155
MflI	RGATCY	1 cut(s)	221
MhlI	GDGCHC	1 cut(s)	433
MluCI	AATT	6 cut(s)	63, 184, 258, 341, 357, 424
MnlI	CCTC	6 cut(s)	235, 238, 312, 346, 357, 450
MroI	TCCGGA	1 cut(s)	304
MseI	TTAA	1 cut(s)	369
MspA1I	CMGCKG	1 cut(s)	158
MspI	CCGG	1 cut(s)	305
MspR9I	CCNGG	1 cut(s)	191
Mva1269I	GAATGC	1 cut(s)	404
MvaI	CCWGG	1 cut(s)	191
MwoI	GCNNNNNNNGC	3 cut(s)	54, 126, 488
NdeII	GATC	1 cut(s)	221
NlaIII	CATG	2 cut(s)	87, 154
NlaIV	GGNNCC	1 cut(s)	223
NmuCI	GTSAC	2 cut(s)	106, 122
PciSI	GCTCTTC	1 cut(s)	168
PctI	GAATGC	1 cut(s)	404
PflMI	CCANNNNNTGG	3 cut(s)	138, 218, 426
PkrI	GCNGC	7 cut(s)	89, 92, 157, 160, 315, 318, 418
Psp6I	CCWGG	1 cut(s)	189
PspGI	CCWGG	1 cut(s)	189
PspN4I	GGNNCC	1 cut(s)	223
PsuI	RGATCY	1 cut(s)	221
PvuII	CAGCTG	1 cut(s)	158
RsaI	GTAC	4 cut(s)	210, 271, 324, 335
RsaNI	GTAC	4 cut(s)	209, 270, 323, 334
SapI	GCTCTTC	1 cut(s)	168
SaqAI	TTAA	1 cut(s)	369
SatI	GCNGC	7 cut(s)	88, 91, 156, 159, 314, 317, 417
Sau3AI	GATC	1 cut(s)	221
ScrFI	CCNGG	1 cut(s)	191
SduI	GDGCHC	1 cut(s)	433
SetI	ASST	4 cut(s)	33, 160, 328, 484
SfaNI	GCATC	1 cut(s)	107
SmlI	CTYRAG	1 cut(s)	229
SmoI	CTYRAG	1 cut(s)	229
Sse9I	AATT	6 cut(s)	63, 184, 258, 341, 357, 424
SsiI	CCGC	3 cut(s)	71, 120, 313
StyD4I	CCNGG	1 cut(s)	189
TaaI	ACNGT	2 cut(s)	112, 299
TaqI	TCGA	1 cut(s)	99
TasI	AATT	6 cut(s)	63, 184, 258, 341, 357, 424
TauI	GCSGC	1 cut(s)	316
Tru1I	TTAA	1 cut(s)	369
Tru9I	TTAA	1 cut(s)	369
TscAI	CASTG	2 cut(s)	131, 418
TseFI	GTSAC	2 cut(s)	106, 122
TseI	GCWGC	6 cut(s)	87, 90, 155, 158, 316, 416
Tsp45I	GTSAC	2 cut(s)	106, 122
TspDTI	ATGAA	1 cut(s)	334
TspGWI	ACGGA	1 cut(s)	301
TspRI	CASTG	2 cut(s)	131, 418
Van91I	CCANNNNNTGG	3 cut(s)	138, 218, 426
XapI	RAATTY	2 cut(s)	258, 357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.