Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0009026

Physical Location & Seq

Genomic Coordinates Forward (+)

1527794 .. 1530462

Gene Structure 2669 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g02470.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGACGAGCTGCGTCGATGTTGCGACTGAGCAACTCTGTTACATCCCTTGCAACTTTTGCAGTATTGTTCTCGCGGTGAGTGTTCCATGCAGCAGCCTATTTGACATTGTGACCGTCCGATGCGGGCACTGCACCAATTTATGGTCCGTGAACATGGCCGCTGCCTTTCAGTCACTGTCCTGGCAAGATGTTCAGGCACAAAACTACAACTATAACTCTCAGAATTACCGGATTGATTCGGGCTCCTCTTCCAAATGCAACAAGAAGAATGCAACCAGAGACCCAACTTCAGATCATGTCACTGAGGAAAGGGGTGTGAATCGACCTCCCGAGAAGAGGCAACGTGTACCTTCTGCATATAACCAGTTCATAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YABBY

Protein Analysis

126

Amino Acids

14.04

Weight (kDa)

8.13

Isoelectric Point (pI)

41.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009026)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26580 AT2G26580
fragaria_vesca	FvH4_1g03040 FvH4_1g03040 FvH4_1g03040 FvH4_1g03040 FvH4_1g03040
malus_domestica	MD02G1029700.v1.1 MD15G1171100.v1.1
prunus_persica	Prupe.7G245200_v2.0.a1 Prupe.7G245200_v2.0.a1
pyrus_communis	pycom02g02470
rosa_chinensis	RchiOBHm_Chr2g0088171
rosa_laevigata	RLG00000015928
rosa_multiflora	Rmu_sc0003275.1_g000065
rosa_roxburghii	Rroxscaffold_2G00152870
rosa_rugosa	Rorug01G0481400
rosa_samantha	Rh2AG036500 Rh2BG035700 Rh2CG036800 Rh2DG036200
rosa_wichuraiana	Rw2G002870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	141
AccII	CGCG	1 cut(s)	74
AciI	CCGC	3 cut(s)	74, 123, 159
AcoI	YGGCCR	1 cut(s)	156
AcuI	CTGAAG	1 cut(s)	273
AfaI	GTAC	1 cut(s)	348
AfiI	CCNNNNNNNGG	2 cut(s)	141, 336
AflIII	ACRYGT	1 cut(s)	343
AjnI	CCWGG	1 cut(s)	179
AluBI	AGCT	1 cut(s)	9
AluI	AGCT	1 cut(s)	9
Alw26I	GTCTC	1 cut(s)	273
AlwNI	CAGNNNCTG	1 cut(s)	175
Ama87I	CYCGRG	1 cut(s)	329
AoxI	GGCC	1 cut(s)	156
ApeKI	GCWGC	4 cut(s)	9, 90, 93, 161
AspS9I	GGNCC	1 cut(s)	144
AsuHPI	GGTGA	1 cut(s)	88
AvaI	CYCGRG	1 cut(s)	329
AvaII	GGWCC	1 cut(s)	144
BaeGI	GKGCMC	1 cut(s)	129
BanII	GRGCYC	1 cut(s)	245
BbvI	GCAGC	3 cut(s)	102, 105, 148
BciT130I	CCWGG	1 cut(s)	181
BcoDI	GTCTC	1 cut(s)	273
BisI	GCNGC	5 cut(s)	10, 91, 94, 159, 162
BlsI	GCNGC	5 cut(s)	11, 92, 95, 160, 163
Bme1390I	CCNGG	1 cut(s)	181
Bme18I	GGWCC	1 cut(s)	144
BmeT110I	CYCGRG	1 cut(s)	329
BmgT120I	GGNCC	1 cut(s)	144
BmiI	GGNNCC	1 cut(s)	244
BmrFI	CCNGG	1 cut(s)	181
BmsI	GCATC	1 cut(s)	110
BsaI	GGTCTC	1 cut(s)	273
BsaWI	WCCGGW	1 cut(s)	228
Bsc4I	CCNNNNNNNGG	2 cut(s)	141, 336
Bse1I	ACTGG	1 cut(s)	364
BseBI	CCWGG	1 cut(s)	181
BseGI	GGATG	1 cut(s)	42
BseLI	CCNNNNNNNGG	2 cut(s)	141, 336
BseMII	CTCAG	3 cut(s)	18, 233, 294
BseNI	ACTGG	1 cut(s)	364
BseRI	GAGGAG	1 cut(s)	235
BseSI	GKGCMC	1 cut(s)	129
BseXI	GCAGC	3 cut(s)	102, 105, 148
BsgI	GTGCAG	1 cut(s)	115
Bsh1236I	CGCG	1 cut(s)	74
BshFI	GGCC	1 cut(s)	158
BsiHKCI	CYCGRG	1 cut(s)	329
BsiSI	CCGG	1 cut(s)	229
BslI	CCNNNNNNNGG	2 cut(s)	141, 336
BsmAI	GTCTC	1 cut(s)	273
BsmI	GAATGC	1 cut(s)	274
BsnI	GGCC	1 cut(s)	158
Bso31I	GGTCTC	1 cut(s)	273
BsoBI	CYCGRG	1 cut(s)	329
Bsp1286I	GDGCHC	2 cut(s)	129, 245
Bsp143I	GATC	1 cut(s)	292
BspACI	CCGC	3 cut(s)	74, 123, 159
BspANI	GGCC	1 cut(s)	158
BspCNI	CTCAG	3 cut(s)	19, 232, 295
BspFNI	CGCG	1 cut(s)	74
BspLI	GGNNCC	1 cut(s)	244
BspTNI	GGTCTC	1 cut(s)	273
BsrI	ACTGG	1 cut(s)	364
BssMI	GATC	1 cut(s)	292
Bst2UI	CCWGG	1 cut(s)	181
Bst4CI	ACNGT	2 cut(s)	115, 177
Bst6I	CTCTTC	2 cut(s)	253, 329
BstAPI	GCANNNNNTGC	1 cut(s)	57
BstC8I	GCNNGC	1 cut(s)	125
BstDEI	CTNAG	3 cut(s)	27, 219, 303
BstF5I	GGATG	1 cut(s)	42
BstFNI	CGCG	1 cut(s)	74
BstKTI	GATC	1 cut(s)	295
BstMAI	GTCTC	1 cut(s)	273
BstMBI	GATC	1 cut(s)	292
BstMWI	GCNNNNNNNGC	2 cut(s)	57, 129
BstNI	CCWGG	1 cut(s)	181
BstSCI	CCNGG	1 cut(s)	179
BstSLI	GKGCMC	1 cut(s)	129
BstUI	CGCG	1 cut(s)	74
BstV1I	GCAGC	3 cut(s)	102, 105, 148
BsuRI	GGCC	1 cut(s)	158
BtsCI	GGATG	1 cut(s)	42
BtsI	GCAGTG	1 cut(s)	127
BtsIMutI	CAGTG	3 cut(s)	127, 173, 300
Cac8I	GCNNGC	1 cut(s)	125
CaiI	CAGNNNCTG	1 cut(s)	175
Cfr13I	GGNCC	1 cut(s)	144
Csp6I	GTAC	1 cut(s)	347
CviAII	CATG	3 cut(s)	87, 154, 296
CviJI	RGCY	4 cut(s)	9, 96, 158, 243
CviKI_1	RGCY	4 cut(s)	9, 96, 158, 243
CviQI	GTAC	1 cut(s)	347
DdeI	CTNAG	3 cut(s)	27, 219, 303
DpnI	GATC	1 cut(s)	294
DpnII	GATC	1 cut(s)	292
EaeI	YGGCCR	1 cut(s)	156
Eam1104I	CTCTTC	2 cut(s)	253, 329
EarI	CTCTTC	2 cut(s)	253, 329
Eco24I	GRGCYC	1 cut(s)	245
Eco31I	GGTCTC	1 cut(s)	273
Eco47I	GGWCC	1 cut(s)	144
Eco57I	CTGAAG	1 cut(s)	273
Eco88I	CYCGRG	1 cut(s)	329
EcoRII	CCWGG	1 cut(s)	179
EcoT38I	GRGCYC	1 cut(s)	245
FaeI	CATG	3 cut(s)	90, 157, 299
FaiI	YATR	8 cut(s)	88, 142, 155, 213, 297, 358, 360, 371
FatI	CATG	3 cut(s)	86, 153, 295
FauI	CCCGC	1 cut(s)	116
Fnu4HI	GCNGC	5 cut(s)	10, 91, 94, 159, 162
FokI	GGATG	1 cut(s)	29
FriOI	GRGCYC	1 cut(s)	245
Fsp4HI	GCNGC	5 cut(s)	10, 91, 94, 159, 162
GluI	GCNGC	5 cut(s)	10, 91, 94, 159, 162
HaeIII	GGCC	1 cut(s)	158
HapII	CCGG	1 cut(s)	229
Hin1II	CATG	3 cut(s)	90, 157, 299
HinfI	GANTC	2 cut(s)	236, 319
HpaII	CCGG	1 cut(s)	229
HphI	GGTGA	1 cut(s)	88
Hpy166II	GTNNAC	2 cut(s)	151, 347
Hpy188I	TCNGA	3 cut(s)	119, 222, 292
Hpy188III	TCNNGA	1 cut(s)	329
Hpy8I	GTNNAC	2 cut(s)	151, 347
Hpy99I	CGWCG	1 cut(s)	17
HpyAV	CCTTC	1 cut(s)	360
HpyCH4III	ACNGT	2 cut(s)	115, 177
HpyCH4IV	ACGT	1 cut(s)	343
HpyCH4V	TGCA	7 cut(s)	51, 60, 90, 132, 258, 272, 356
HpyF10VI	GCNNNNNNNGC	2 cut(s)	57, 129
HpyF3I	CTNAG	3 cut(s)	27, 219, 303
HpySE526I	ACGT	1 cut(s)	343
Hsp92II	CATG	3 cut(s)	90, 157, 299
Kzo9I	GATC	1 cut(s)	292
LmnI	GCTCC	1 cut(s)	248
LpnPI	CCDG	5 cut(s)	166, 179, 193, 242, 289
Lsp1109I	GCAGC	3 cut(s)	102, 105, 148
LweI	GCATC	1 cut(s)	110
MaeII	ACGT	1 cut(s)	343
MaeIII	GTNAC	4 cut(s)	38, 109, 171, 298
MalI	GATC	1 cut(s)	294
MboI	GATC	1 cut(s)	292
MboII	GAAGA	3 cut(s)	240, 277, 346
MhlI	GDGCHC	2 cut(s)	129, 245
MluCI	AATT	2 cut(s)	136, 223
MnlI	CCTC	4 cut(s)	256, 298, 330, 336
MspA1I	CMGCKG	1 cut(s)	161
MspI	CCGG	1 cut(s)	229
MspR9I	CCNGG	1 cut(s)	181
Mva1269I	GAATGC	1 cut(s)	274
MvaI	CCWGG	1 cut(s)	181
MvnI	CGCG	1 cut(s)	74
MwoI	GCNNNNNNNGC	2 cut(s)	57, 129
NdeII	GATC	1 cut(s)	292
NlaIII	CATG	3 cut(s)	90, 157, 299
NlaIV	GGNNCC	1 cut(s)	244
NmuCI	GTSAC	3 cut(s)	109, 171, 298
PctI	GAATGC	1 cut(s)	274
PfeI	GAWTC	2 cut(s)	236, 319
PflMI	CCANNNNNTGG	1 cut(s)	141
PkrI	GCNGC	5 cut(s)	11, 92, 95, 160, 163
Psp6I	CCWGG	1 cut(s)	179
PspGI	CCWGG	1 cut(s)	179
PspN4I	GGNNCC	1 cut(s)	244
PspPI	GGNCC	1 cut(s)	144
PstNI	CAGNNNCTG	1 cut(s)	175
RsaI	GTAC	1 cut(s)	348
RsaNI	GTAC	1 cut(s)	347
SatI	GCNGC	5 cut(s)	10, 91, 94, 159, 162
Sau3AI	GATC	1 cut(s)	292
Sau96I	GGNCC	1 cut(s)	144
ScrFI	CCNGG	1 cut(s)	181
SduI	GDGCHC	2 cut(s)	129, 245
SetI	ASST	4 cut(s)	11, 328, 346, 352
SfaNI	GCATC	1 cut(s)	110
SinI	GGWCC	1 cut(s)	144
Sse9I	AATT	2 cut(s)	136, 223
SsiI	CCGC	3 cut(s)	74, 123, 159
StyD4I	CCNGG	1 cut(s)	179
TaaI	ACNGT	2 cut(s)	115, 177
TaiI	ACGT	1 cut(s)	346
TaqI	TCGA	2 cut(s)	15, 322
TasI	AATT	2 cut(s)	136, 223
TauI	GCSGC	1 cut(s)	161
TfiI	GAWTC	2 cut(s)	236, 319
TscAI	CASTG	3 cut(s)	134, 180, 307
TseFI	GTSAC	3 cut(s)	109, 171, 298
TseI	GCWGC	4 cut(s)	9, 90, 93, 161
Tsp45I	GTSAC	3 cut(s)	109, 171, 298
TspDTI	ATGAA	1 cut(s)	358
TspGWI	ACGGA	1 cut(s)	136
TspRI	CASTG	3 cut(s)	134, 180, 307
Van91I	CCANNNNNTGG	1 cut(s)	141
VpaK11BI	GGWCC	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.