Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0009026

Physical Location & Seq

Genomic Coordinates Forward (+)

2490930 .. 2494874

Gene Structure 3945 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG035700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGATCAATTGTGCTTTAATTGTGCAGGTGAGTGTTCCATGCAGCAGCTTATTTGACATCGTGACCGTCCGATGCGGGCACTGTACCAATCTGTGGTCCGTGAACATGGCCGCTGCCTTTCAGTCACTGTCCTGGCAAGATGTCCAGGCACAAAACCAAAGCGCACAGAATTACCGGATTGATTCGGGTTCATCATCCAAAGGCAACAAGAAGATTGCAACCAGAGACTCCATTGCAGTTCATCATGCCACTGAGGAAAGGGGTGTCAACCGACCTCCCGAGAAGAGGCAGCGCGTACCCTCTGCTTATAACCAGTTCATAAAGGAGGAGATTCAGAGGATCAAGGCCAATAACCCTGATATTAGCCATAGAGAAGCTTTCAGCACTGCTGCCAAAAATTGGGCGCACTTCCCTCATATTCATTTTGGGCTGATGTTGGAGACCAACAATCAGGCTAAGCTGGACAATGGCTCTGAGAAACATCTTCTGTCAAGGGCTGCACTACTGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YABBY

Protein Analysis

170

Amino Acids

19.04

Weight (kDa)

9.35

Isoelectric Point (pI)

34.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
YABBY_N	PF24868	4 - 48	9.7e-19	YABBY, N-terminal
YABBY	PF04690	85 - 143	7.3e-38	YABBY protein, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009026)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26580 AT2G26580
fragaria_vesca	FvH4_1g03040 FvH4_1g03040 FvH4_1g03040 FvH4_1g03040 FvH4_1g03040
malus_domestica	MD02G1029700.v1.1 MD15G1171100.v1.1
prunus_persica	Prupe.7G245200_v2.0.a1 Prupe.7G245200_v2.0.a1
pyrus_communis	pycom02g02470
rosa_chinensis	RchiOBHm_Chr2g0088171
rosa_laevigata	RLG00000015928
rosa_multiflora	Rmu_sc0003275.1_g000065
rosa_roxburghii	Rroxscaffold_2G00152870
rosa_rugosa	Rorug01G0481400
rosa_samantha	Rh2AG036500 Rh2BG035700 Rh2CG036800 Rh2DG036200
rosa_wichuraiana	Rw2G002870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	309
AarI	CACCTGC	1 cut(s)	16
Acc36I	ACCTGC	1 cut(s)	16
AccB7I	CCANNNNNTGG	2 cut(s)	93, 399
AccII	CGCG	1 cut(s)	294
AciI	CCGC	2 cut(s)	75, 111
AclWI	GGATC	1 cut(s)	347
AcoI	YGGCCR	1 cut(s)	108
AfaI	GTAC	2 cut(s)	85, 297
AfiI	CCNNNNNNNGG	3 cut(s)	93, 285, 399
AjnI	CCWGG	2 cut(s)	131, 144
AluBI	AGCT	3 cut(s)	48, 377, 460
AluI	AGCT	3 cut(s)	48, 377, 460
Alw26I	GTCTC	2 cut(s)	219, 434
AlwI	GGATC	1 cut(s)	347
AlwNI	CAGNNNCTG	1 cut(s)	127
Ama87I	CYCGRG	1 cut(s)	278
AoxI	GGCC	2 cut(s)	108, 345
ApeKI	GCWGC	6 cut(s)	42, 45, 113, 289, 389, 497
AspLEI	GCGC	3 cut(s)	164, 294, 406
AspS9I	GGNCC	1 cut(s)	96
AsuHPI	GGTGA	1 cut(s)	40
AvaI	CYCGRG	1 cut(s)	278
AvaII	GGWCC	1 cut(s)	96
BaeGI	GKGCMC	1 cut(s)	81
BbvI	GCAGC	6 cut(s)	54, 57, 100, 301, 376, 484
BciT130I	CCWGG	2 cut(s)	133, 146
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	2 cut(s)	219, 434
BfuAI	ACCTGC	1 cut(s)	16
BisI	GCNGC	7 cut(s)	43, 46, 111, 114, 290, 390, 498
BlpI	GCTNAGC	1 cut(s)	456
BlsI	GCNGC	7 cut(s)	44, 47, 112, 115, 291, 391, 499
Bme1390I	CCNGG	2 cut(s)	133, 146
Bme18I	GGWCC	1 cut(s)	96
BmeT110I	CYCGRG	1 cut(s)	278
BmgT120I	GGNCC	1 cut(s)	96
BmrFI	CCNGG	2 cut(s)	133, 146
BmsI	GCATC	1 cut(s)	62
Bpu1102I	GCTNAGC	1 cut(s)	456
BsaI	GGTCTC	1 cut(s)	434
BsaWI	WCCGGW	1 cut(s)	174
Bsc4I	CCNNNNNNNGG	3 cut(s)	93, 285, 399
Bse1I	ACTGG	1 cut(s)	313
Bse3DI	GCAATG	1 cut(s)	231
BseBI	CCWGG	2 cut(s)	133, 146
BseGI	GGATG	1 cut(s)	194
BseLI	CCNNNNNNNGG	3 cut(s)	93, 285, 399
BseMI	GCAATG	1 cut(s)	231
BseMII	CTCAG	2 cut(s)	243, 465
BseNI	ACTGG	1 cut(s)	313
BseRI	GAGGAG	1 cut(s)	341
BseSI	GKGCMC	1 cut(s)	81
BseXI	GCAGC	6 cut(s)	54, 57, 100, 301, 376, 484
BsgI	GTGCAG	2 cut(s)	44, 483
Bsh1236I	CGCG	1 cut(s)	294
BshFI	GGCC	2 cut(s)	110, 347
BsiHKCI	CYCGRG	1 cut(s)	278
BsiSI	CCGG	1 cut(s)	175
BslI	CCNNNNNNNGG	3 cut(s)	93, 285, 399
BsmAI	GTCTC	2 cut(s)	219, 434
BsnI	GGCC	2 cut(s)	110, 347
Bso31I	GGTCTC	1 cut(s)	434
BsoBI	CYCGRG	1 cut(s)	278
Bsp1286I	GDGCHC	1 cut(s)	81
Bsp143I	GATC	2 cut(s)	3, 339
Bsp1720I	GCTNAGC	1 cut(s)	456
BspACI	CCGC	2 cut(s)	75, 111
BspANI	GGCC	2 cut(s)	110, 347
BspCNI	CTCAG	2 cut(s)	244, 466
BspFNI	CGCG	1 cut(s)	294
BspMI	ACCTGC	1 cut(s)	16
BspPI	GGATC	1 cut(s)	347
BspTNI	GGTCTC	1 cut(s)	434
BsrDI	GCAATG	1 cut(s)	231
BsrI	ACTGG	1 cut(s)	313
BssMI	GATC	2 cut(s)	3, 339
Bst2UI	CCWGG	2 cut(s)	133, 146
Bst4CI	ACNGT	3 cut(s)	67, 83, 129
Bst6I	CTCTTC	1 cut(s)	278
BstC8I	GCNNGC	1 cut(s)	77
BstDEI	CTNAG	3 cut(s)	252, 456, 474
BstF5I	GGATG	1 cut(s)	194
BstFNI	CGCG	1 cut(s)	294
BstHHI	GCGC	3 cut(s)	164, 294, 406
BstKTI	GATC	2 cut(s)	6, 342
BstMAI	GTCTC	2 cut(s)	219, 434
BstMBI	GATC	2 cut(s)	3, 339
BstNI	CCWGG	2 cut(s)	133, 146
BstSCI	CCNGG	2 cut(s)	131, 144
BstSLI	GKGCMC	1 cut(s)	81
BstUI	CGCG	1 cut(s)	294
BstV1I	GCAGC	6 cut(s)	54, 57, 100, 301, 376, 484
BsuRI	GGCC	2 cut(s)	110, 347
BtsCI	GGATG	1 cut(s)	194
BtsI	GCAGTG	1 cut(s)	384
BtsIMutI	CAGTG	4 cut(s)	79, 125, 249, 384
BveI	ACCTGC	1 cut(s)	16
Cac8I	GCNNGC	1 cut(s)	77
CaiI	CAGNNNCTG	1 cut(s)	127
CfoI	GCGC	3 cut(s)	164, 294, 406
Cfr13I	GGNCC	1 cut(s)	96
Csp6I	GTAC	2 cut(s)	84, 296
CviAII	CATG	3 cut(s)	39, 106, 245
CviQI	GTAC	2 cut(s)	84, 296
DdeI	CTNAG	3 cut(s)	252, 456, 474
DpnI	GATC	2 cut(s)	5, 341
DpnII	GATC	2 cut(s)	3, 339
EaeI	YGGCCR	1 cut(s)	108
Eam1104I	CTCTTC	1 cut(s)	278
EarI	CTCTTC	1 cut(s)	278
Eco31I	GGTCTC	1 cut(s)	434
Eco47I	GGWCC	1 cut(s)	96
Eco88I	CYCGRG	1 cut(s)	278
EcoRII	CCWGG	2 cut(s)	131, 144
FaeI	CATG	3 cut(s)	42, 109, 248
FaiI	YATR	7 cut(s)	40, 107, 246, 309, 320, 369, 417
FatI	CATG	3 cut(s)	38, 105, 244
FauI	CCCGC	1 cut(s)	68
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	7 cut(s)	43, 46, 111, 114, 290, 390, 498
FokI	GGATG	1 cut(s)	181
Fsp4HI	GCNGC	7 cut(s)	43, 46, 111, 114, 290, 390, 498
GlaI	GCGC	3 cut(s)	163, 293, 405
GluI	GCNGC	7 cut(s)	43, 46, 111, 114, 290, 390, 498
HaeIII	GGCC	2 cut(s)	110, 347
HapII	CCGG	1 cut(s)	175
HhaI	GCGC	3 cut(s)	164, 294, 406
Hin1II	CATG	3 cut(s)	42, 109, 248
Hin6I	GCGC	3 cut(s)	162, 292, 404
HinP1I	GCGC	3 cut(s)	162, 292, 404
HincII	GTYRAC	1 cut(s)	268
HindII	GTYRAC	1 cut(s)	268
HindIII	AAGCTT	1 cut(s)	375
HinfI	GANTC	3 cut(s)	182, 227, 331
HpaII	CCGG	1 cut(s)	175
HphI	GGTGA	1 cut(s)	40
Hpy166II	GTNNAC	2 cut(s)	103, 268
Hpy188I	TCNGA	3 cut(s)	71, 336, 475
Hpy188III	TCNNGA	2 cut(s)	61, 278
Hpy8I	GTNNAC	2 cut(s)	103, 268
HpyCH4III	ACNGT	3 cut(s)	67, 83, 129
HpyCH4V	TGCA	5 cut(s)	25, 42, 218, 236, 500
HpyF3I	CTNAG	3 cut(s)	252, 456, 474
Hsp92II	CATG	3 cut(s)	42, 109, 248
HspAI	GCGC	3 cut(s)	162, 292, 404
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	2 cut(s)	3, 339
Lsp1109I	GCAGC	6 cut(s)	54, 57, 100, 301, 376, 484
LweI	GCATC	1 cut(s)	62
MaeIII	GTNAC	2 cut(s)	61, 123
MalI	GATC	2 cut(s)	5, 341
MboI	GATC	2 cut(s)	3, 339
MboII	GAAGA	3 cut(s)	223, 295, 476
MfeI	CAATTG	1 cut(s)	7
MhlI	GDGCHC	1 cut(s)	81
MluCI	AATT	4 cut(s)	7, 18, 169, 397
MlyI	GAGTC	1 cut(s)	221
MmeI	TCCRAC	1 cut(s)	417
MnlI	CCTC	7 cut(s)	247, 279, 285, 310, 319, 330, 423
MseI	TTAA	1 cut(s)	17
MspA1I	CMGCKG	1 cut(s)	113
MspI	CCGG	1 cut(s)	175
MspR9I	CCNGG	2 cut(s)	133, 146
MunI	CAATTG	1 cut(s)	7
MvaI	CCWGG	2 cut(s)	133, 146
MvnI	CGCG	1 cut(s)	294
NdeII	GATC	2 cut(s)	3, 339
NlaIII	CATG	3 cut(s)	42, 109, 248
NmuCI	GTSAC	2 cut(s)	61, 123
PaqCI	CACCTGC	1 cut(s)	16
PfeI	GAWTC	2 cut(s)	182, 331
PflMI	CCANNNNNTGG	2 cut(s)	93, 399
PkrI	GCNGC	7 cut(s)	44, 47, 112, 115, 291, 391, 499
PleI	GAGTC	1 cut(s)	221
PpsI	GAGTC	1 cut(s)	221
PsiI	TTATAA	1 cut(s)	309
Psp6I	CCWGG	2 cut(s)	131, 144
PspGI	CCWGG	2 cut(s)	131, 144
PspPI	GGNCC	1 cut(s)	96
PstNI	CAGNNNCTG	1 cut(s)	127
RsaI	GTAC	2 cut(s)	85, 297
RsaNI	GTAC	2 cut(s)	84, 296
SaqAI	TTAA	1 cut(s)	17
SatI	GCNGC	7 cut(s)	43, 46, 111, 114, 290, 390, 498
Sau3AI	GATC	2 cut(s)	3, 339
Sau96I	GGNCC	1 cut(s)	96
SchI	GAGTC	1 cut(s)	221
ScrFI	CCNGG	2 cut(s)	133, 146
SduI	GDGCHC	1 cut(s)	81
SetI	ASST	5 cut(s)	30, 50, 277, 379, 462
SfaNI	GCATC	1 cut(s)	62
SinI	GGWCC	1 cut(s)	96
Sse9I	AATT	4 cut(s)	7, 18, 169, 397
SsiI	CCGC	2 cut(s)	75, 111
StyD4I	CCNGG	2 cut(s)	131, 144
TaaI	ACNGT	3 cut(s)	67, 83, 129
TasI	AATT	4 cut(s)	7, 18, 169, 397
TauI	GCSGC	1 cut(s)	113
TfiI	GAWTC	2 cut(s)	182, 331
Tru1I	TTAA	1 cut(s)	17
Tru9I	TTAA	1 cut(s)	17
TscAI	CASTG	4 cut(s)	86, 132, 256, 391
TseFI	GTSAC	2 cut(s)	61, 123
TseI	GCWGC	6 cut(s)	42, 45, 113, 289, 389, 497
Tsp45I	GTSAC	2 cut(s)	61, 123
TspDTI	ATGAA	4 cut(s)	180, 230, 307, 410
TspGWI	ACGGA	1 cut(s)	88
TspRI	CASTG	4 cut(s)	86, 132, 256, 391
Van91I	CCANNNNNTGG	2 cut(s)	93, 399
VpaK11BI	GGWCC	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.