Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0009026

Physical Location & Seq

Genomic Coordinates Forward (+)

13285307 .. 13289705

Gene Structure 4399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1171100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGACGAGCTGCGTCGATGTTGCGACTGAGCAACTCTGTTACATCCCTTGCAACTTTTGCAGTATTGTACTCGCGGTGAGCGTTCCATGCAGCAGCCTATTTGACATTGTGACCGTCCGATGCGGGCGCTGCACCAATTTATGGTCCGTGAACATGGCCGCAGCCTTTCAGTCACTGTCCTGGCAAGATGTTCAGGCACAAAACTACAACTGTAACTCTCAAAACTACCGGATTGATTCGGGCTCCTCTTCCAAATGCAACAAGAAGAATGCAACCGGAGACCCAACTTTATATCCTGCCACGGAAGAAAGGGGTGTGAACCGACCTCCCGAGAAGAGGCAACGTGTACCTTCTGCATATAACCAGTTCATAAAGGAGGAGATTCAGAGGATCAAGGCTAATAATCCAGATATTAGCCATAGAGAGGCTTTCAGCACTGCTGCCAAAAATTGGGCGCACTTCCCTCGTATTCATTTTGGGCTGATGTTGGAGACCAACAGTCAGGCTAAGCTGGACAATATATGTAAGACCCTGAGAAACATCTTATGTCAAGGGCTGCACTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YABBY

Protein Analysis

189

Amino Acids

21.19

Weight (kDa)

8.65

Isoelectric Point (pI)

41.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
YABBY_N	PF24868	8 - 64	1.1e-27	YABBY, N-terminal
YABBY	PF04690	103 - 160	2.2e-37	YABBY protein, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009026)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26580 AT2G26580
fragaria_vesca	FvH4_1g03040 FvH4_1g03040 FvH4_1g03040 FvH4_1g03040 FvH4_1g03040
malus_domestica	MD02G1029700.v1.1 MD15G1171100.v1.1
prunus_persica	Prupe.7G245200_v2.0.a1 Prupe.7G245200_v2.0.a1
pyrus_communis	pycom02g02470
rosa_chinensis	RchiOBHm_Chr2g0088171
rosa_laevigata	RLG00000015928
rosa_multiflora	Rmu_sc0003275.1_g000065
rosa_roxburghii	Rroxscaffold_2G00152870
rosa_rugosa	Rorug01G0481400
rosa_samantha	Rh2AG036500 Rh2BG035700 Rh2CG036800 Rh2DG036200
rosa_wichuraiana	Rw2G002870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	141, 450
AccII	CGCG	1 cut(s)	74
AciI	CCGC	3 cut(s)	74, 123, 159
AclWI	GGATC	1 cut(s)	398
AcoI	YGGCCR	1 cut(s)	156
AfaI	GTAC	2 cut(s)	69, 348
AfiI	CCNNNNNNNGG	4 cut(s)	141, 336, 424, 450
AflIII	ACRYGT	1 cut(s)	343
AhdI	GACNNNNNGTC	1 cut(s)	498
AjnI	CCWGG	1 cut(s)	179
AluBI	AGCT	2 cut(s)	9, 511
AluI	AGCT	2 cut(s)	9, 511
Alw26I	GTCTC	2 cut(s)	273, 485
AlwI	GGATC	1 cut(s)	398
AlwNI	CAGNNNCTG	1 cut(s)	175
Ama87I	CYCGRG	1 cut(s)	329
AoxI	GGCC	1 cut(s)	156
ApeKI	GCWGC	7 cut(s)	9, 90, 93, 129, 161, 440, 556
AspLEI	GCGC	2 cut(s)	129, 457
AspS9I	GGNCC	1 cut(s)	144
AsuHPI	GGTGA	1 cut(s)	88
AvaI	CYCGRG	1 cut(s)	329
AvaII	GGWCC	1 cut(s)	144
BanII	GRGCYC	1 cut(s)	245
BbvI	GCAGC	6 cut(s)	102, 105, 116, 173, 427, 543
BcgI	CGANNNNNNTGC	2 cut(s)	446, 480
BciT130I	CCWGG	1 cut(s)	181
BcoDI	GTCTC	2 cut(s)	273, 485
BfoI	RGCGCY	1 cut(s)	130
BisI	GCNGC	8 cut(s)	10, 91, 94, 130, 159, 162, 441, 557
BlpI	GCTNAGC	1 cut(s)	507
BlsI	GCNGC	8 cut(s)	11, 92, 95, 131, 160, 163, 442, 558
Bme1390I	CCNGG	1 cut(s)	181
Bme18I	GGWCC	1 cut(s)	144
BmeRI	GACNNNNNGTC	1 cut(s)	498
BmeT110I	CYCGRG	1 cut(s)	329
BmgT120I	GGNCC	1 cut(s)	144
BmiI	GGNNCC	1 cut(s)	244
BmrFI	CCNGG	1 cut(s)	181
BmsI	GCATC	1 cut(s)	110
Bpu1102I	GCTNAGC	1 cut(s)	507
BsaI	GGTCTC	2 cut(s)	273, 485
BsaJI	CCNNGG	1 cut(s)	300
BsaWI	WCCGGW	2 cut(s)	228, 275
Bsc4I	CCNNNNNNNGG	4 cut(s)	141, 336, 424, 450
Bse1I	ACTGG	1 cut(s)	364
BseBI	CCWGG	1 cut(s)	181
BseDI	CCNNGG	1 cut(s)	300
BseGI	GGATG	1 cut(s)	42
BseLI	CCNNNNNNNGG	4 cut(s)	141, 336, 424, 450
BseMII	CTCAG	2 cut(s)	18, 524
BseNI	ACTGG	1 cut(s)	364
BseRI	GAGGAG	2 cut(s)	235, 392
BseXI	GCAGC	6 cut(s)	102, 105, 116, 173, 427, 543
BsgI	GTGCAG	2 cut(s)	115, 542
Bsh1236I	CGCG	1 cut(s)	74
BshFI	GGCC	1 cut(s)	158
BsiHKCI	CYCGRG	1 cut(s)	329
BsiSI	CCGG	2 cut(s)	229, 276
BslI	CCNNNNNNNGG	4 cut(s)	141, 336, 424, 450
BsmAI	GTCTC	2 cut(s)	273, 485
BsmI	GAATGC	1 cut(s)	274
BsnI	GGCC	1 cut(s)	158
Bso31I	GGTCTC	2 cut(s)	273, 485
BsoBI	CYCGRG	1 cut(s)	329
Bsp1286I	GDGCHC	1 cut(s)	245
Bsp143I	GATC	1 cut(s)	390
Bsp1720I	GCTNAGC	1 cut(s)	507
BspACI	CCGC	3 cut(s)	74, 123, 159
BspANI	GGCC	1 cut(s)	158
BspCNI	CTCAG	2 cut(s)	19, 525
BspFNI	CGCG	1 cut(s)	74
BspLI	GGNNCC	1 cut(s)	244
BspPI	GGATC	1 cut(s)	398
BspTNI	GGTCTC	2 cut(s)	273, 485
BsrI	ACTGG	1 cut(s)	364
BssECI	CCNNGG	1 cut(s)	300
BssMI	GATC	1 cut(s)	390
Bst2UI	CCWGG	1 cut(s)	181
Bst4CI	ACNGT	4 cut(s)	115, 177, 212, 500
Bst6I	CTCTTC	2 cut(s)	253, 329
BstAPI	GCANNNNNTGC	1 cut(s)	57
BstC8I	GCNNGC	1 cut(s)	125
BstDEI	CTNAG	3 cut(s)	27, 507, 533
BstDSI	CCRYGG	1 cut(s)	300
BstF5I	GGATG	1 cut(s)	42
BstFNI	CGCG	1 cut(s)	74
BstH2I	RGCGCY	1 cut(s)	130
BstHHI	GCGC	2 cut(s)	129, 457
BstKTI	GATC	1 cut(s)	393
BstMAI	GTCTC	2 cut(s)	273, 485
BstMBI	GATC	1 cut(s)	390
BstMWI	GCNNNNNNNGC	3 cut(s)	57, 87, 129
BstNI	CCWGG	1 cut(s)	181
BstSCI	CCNGG	1 cut(s)	179
BstUI	CGCG	1 cut(s)	74
BstV1I	GCAGC	6 cut(s)	102, 105, 116, 173, 427, 543
BsuRI	GGCC	1 cut(s)	158
BtgI	CCRYGG	1 cut(s)	300
BtsCI	GGATG	1 cut(s)	42
BtsI	GCAGTG	1 cut(s)	435
BtsIMutI	CAGTG	2 cut(s)	173, 435
Cac8I	GCNNGC	1 cut(s)	125
CaiI	CAGNNNCTG	1 cut(s)	175
CfoI	GCGC	2 cut(s)	129, 457
Cfr13I	GGNCC	1 cut(s)	144
Csp6I	GTAC	2 cut(s)	68, 347
CviAII	CATG	2 cut(s)	87, 154
CviQI	GTAC	2 cut(s)	68, 347
DdeI	CTNAG	3 cut(s)	27, 507, 533
DpnI	GATC	1 cut(s)	392
DpnII	GATC	1 cut(s)	390
DriI	GACNNNNNGTC	1 cut(s)	498
EaeI	YGGCCR	1 cut(s)	156
Eam1104I	CTCTTC	2 cut(s)	253, 329
Eam1105I	GACNNNNNGTC	1 cut(s)	498
EarI	CTCTTC	2 cut(s)	253, 329
Eco24I	GRGCYC	1 cut(s)	245
Eco31I	GGTCTC	2 cut(s)	273, 485
Eco47I	GGWCC	1 cut(s)	144
Eco88I	CYCGRG	1 cut(s)	329
EcoRII	CCWGG	1 cut(s)	179
EcoT38I	GRGCYC	1 cut(s)	245
FaeI	CATG	2 cut(s)	90, 157
FatI	CATG	2 cut(s)	86, 153
FauI	CCCGC	1 cut(s)	116
Fnu4HI	GCNGC	8 cut(s)	10, 91, 94, 130, 159, 162, 441, 557
FokI	GGATG	1 cut(s)	29
FriOI	GRGCYC	1 cut(s)	245
Fsp4HI	GCNGC	8 cut(s)	10, 91, 94, 130, 159, 162, 441, 557
GlaI	GCGC	2 cut(s)	128, 456
GluI	GCNGC	8 cut(s)	10, 91, 94, 130, 159, 162, 441, 557
HaeII	RGCGCY	1 cut(s)	130
HaeIII	GGCC	1 cut(s)	158
HapII	CCGG	2 cut(s)	229, 276
HhaI	GCGC	2 cut(s)	129, 457
Hin1II	CATG	2 cut(s)	90, 157
Hin6I	GCGC	2 cut(s)	127, 455
HinP1I	GCGC	2 cut(s)	127, 455
HinfI	GANTC	2 cut(s)	236, 382
HpaII	CCGG	2 cut(s)	229, 276
HphI	GGTGA	1 cut(s)	88
Hpy166II	GTNNAC	3 cut(s)	151, 319, 347
Hpy188I	TCNGA	2 cut(s)	119, 387
Hpy188III	TCNNGA	2 cut(s)	329, 407
Hpy8I	GTNNAC	3 cut(s)	151, 319, 347
Hpy99I	CGWCG	1 cut(s)	17
HpyAV	CCTTC	1 cut(s)	360
HpyCH4III	ACNGT	4 cut(s)	115, 177, 212, 500
HpyCH4IV	ACGT	1 cut(s)	343
HpyCH4V	TGCA	8 cut(s)	51, 60, 90, 132, 258, 272, 356, 559
HpyF10VI	GCNNNNNNNGC	3 cut(s)	57, 87, 129
HpyF3I	CTNAG	3 cut(s)	27, 507, 533
HpySE526I	ACGT	1 cut(s)	343
Hsp92II	CATG	2 cut(s)	90, 157
HspAI	GCGC	2 cut(s)	127, 455
Kzo9I	GATC	1 cut(s)	390
LmnI	GCTCC	1 cut(s)	248
Lsp1109I	GCAGC	6 cut(s)	102, 105, 116, 173, 427, 543
LweI	GCATC	1 cut(s)	110
MaeII	ACGT	1 cut(s)	343
MaeIII	GTNAC	4 cut(s)	38, 109, 171, 212
MalI	GATC	1 cut(s)	392
MboI	GATC	1 cut(s)	390
MboII	GAAGA	4 cut(s)	240, 277, 317, 346
MhlI	GDGCHC	1 cut(s)	245
MluCI	AATT	2 cut(s)	136, 448
MmeI	TCCRAC	1 cut(s)	468
MnlI	CCTC	7 cut(s)	256, 330, 336, 370, 381, 418, 474
MspI	CCGG	2 cut(s)	229, 276
MspR9I	CCNGG	1 cut(s)	181
Mva1269I	GAATGC	1 cut(s)	274
MvaI	CCWGG	1 cut(s)	181
MvnI	CGCG	1 cut(s)	74
MwoI	GCNNNNNNNGC	3 cut(s)	57, 87, 129
NdeII	GATC	1 cut(s)	390
NlaIII	CATG	2 cut(s)	90, 157
NlaIV	GGNNCC	1 cut(s)	244
NmuCI	GTSAC	2 cut(s)	109, 171
PcsI	WCGNNNNNNNCGW	1 cut(s)	78
PctI	GAATGC	1 cut(s)	274
PfeI	GAWTC	2 cut(s)	236, 382
PflMI	CCANNNNNTGG	2 cut(s)	141, 450
PkrI	GCNGC	8 cut(s)	11, 92, 95, 131, 160, 163, 442, 558
Psp6I	CCWGG	1 cut(s)	179
PspGI	CCWGG	1 cut(s)	179
PspN4I	GGNNCC	1 cut(s)	244
PspPI	GGNCC	1 cut(s)	144
PstNI	CAGNNNCTG	1 cut(s)	175
RsaI	GTAC	2 cut(s)	69, 348
RsaNI	GTAC	2 cut(s)	68, 347
SatI	GCNGC	8 cut(s)	10, 91, 94, 130, 159, 162, 441, 557
Sau3AI	GATC	1 cut(s)	390
Sau96I	GGNCC	1 cut(s)	144
ScrFI	CCNGG	1 cut(s)	181
SduI	GDGCHC	1 cut(s)	245
SetI	ASST	5 cut(s)	11, 328, 346, 352, 513
SfaNI	GCATC	1 cut(s)	110
SinI	GGWCC	1 cut(s)	144
Sse9I	AATT	2 cut(s)	136, 448
SsiI	CCGC	3 cut(s)	74, 123, 159
StyD4I	CCNGG	1 cut(s)	179
TaaI	ACNGT	4 cut(s)	115, 177, 212, 500
TaiI	ACGT	1 cut(s)	346
TaqI	TCGA	1 cut(s)	15
TasI	AATT	2 cut(s)	136, 448
TatI	WGTACW	1 cut(s)	67
TauI	GCSGC	1 cut(s)	161
TfiI	GAWTC	2 cut(s)	236, 382
TscAI	CASTG	2 cut(s)	180, 442
TseFI	GTSAC	2 cut(s)	109, 171
TseI	GCWGC	7 cut(s)	9, 90, 93, 129, 161, 440, 556
Tsp45I	GTSAC	2 cut(s)	109, 171
TspDTI	ATGAA	2 cut(s)	358, 461
TspGWI	ACGGA	2 cut(s)	136, 317
TspRI	CASTG	2 cut(s)	180, 442
Van91I	CCANNNNNTGG	2 cut(s)	141, 450
VpaK11BI	GGWCC	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.