FvH4_1g03040

Axial regulator YABBY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0009026
Physical Location & Seq
Forward (+)
1714477 .. 1717938
3462 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g03040.t3

Sequence Viewer

Length: 561 bp
ATGTCGAGCTGCATCGATGCTGTGCCTGAGCAACTCTGCTACATCCCCTGCAACTTTTGCAATATTGTTCTCGCGGTGAGTGTTCCATGCAGCAGTCTATTGGACATCGTGACCGTCCGATGTGGGCACTGCACCAATCTGTGGTCCGTGAACATGGCCGCTGCCTTTCAGTCACTGTCCTGGCAAGATGTCCAGGCACAACACAACCATAACGCACAGAATTACCGGATTGATTCGGGTTCATCATCCAAAGGCAACAAGAAGATTGCAACCAGAGACTCCATTGCAGATCATCGTGCCACTGAGGAAAGGGTCAACCGACCTCCGGAGAAGAGGCAGCGCGTACCCTCTGCTTATAATCAGTTCATAAAGGAGGAGATTCAGAGGATCAAGGCCAATAACCCTGATATTAGCCATAGAGAAGCTTTCAGCACTGCTGCCAAAAACTGGGCGCACTTCCCTCATATTCATTTTGGGCTGATGTTGGAGACCAACAATCAAGCTAAGCTGGACAATGGCTCTGAGAAACATCTTATGTCGAGGGCTGCAGTACTAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YABBY

Protein Analysis

187

Amino Acids

20.9

Weight (kDa)

8.71

Isoelectric Point (pI)

44.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YABBY PF04690 36 - 98 4.7e-38 YABBY protein, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 357
AccB7I CCANNNNNTGG 2 cut(s) 141, 447
AccII CGCG 2 cut(s) 74, 342
AccIII TCCGGA 1 cut(s) 325
AciI CCGC 2 cut(s) 74, 159
AclWI GGATC 1 cut(s) 395
AcoI YGGCCR 1 cut(s) 156
AfaI GTAC 2 cut(s) 345, 552
AfiI CCNNNNNNNGG 3 cut(s) 141, 325, 447
AjnI CCWGG 2 cut(s) 179, 192
AluBI AGCT 4 cut(s) 9, 425, 503, 508
AluI AGCT 4 cut(s) 9, 425, 503, 508
Alw26I GTCTC 2 cut(s) 270, 482
AlwI GGATC 1 cut(s) 395
AlwNI CAGNNNCTG 1 cut(s) 175
Aor13HI TCCGGA 1 cut(s) 325
AoxI GGCC 2 cut(s) 156, 393
ApeKI GCWGC 6 cut(s) 9, 90, 161, 337, 437, 545
AspLEI GCGC 2 cut(s) 342, 454
AspS9I GGNCC 1 cut(s) 144
AsuHPI GGTGA 1 cut(s) 88
AvaII GGWCC 1 cut(s) 144
BaeGI GKGCMC 1 cut(s) 129
BbvI GCAGC 5 cut(s) 102, 148, 349, 424, 532
BciT130I CCWGG 2 cut(s) 181, 194
BcoDI GTCTC 2 cut(s) 270, 482
BfmI CTRYAG 1 cut(s) 546
BisI GCNGC 7 cut(s) 10, 91, 159, 162, 338, 438, 546
BlpI GCTNAGC 1 cut(s) 504
BlsI GCNGC 7 cut(s) 11, 92, 160, 163, 339, 439, 547
BmcAI AGTACT 1 cut(s) 552
Bme1390I CCNGG 2 cut(s) 181, 194
Bme18I GGWCC 1 cut(s) 144
BmgT120I GGNCC 1 cut(s) 144
BmrFI CCNGG 2 cut(s) 181, 194
BmrI ACTGGG 1 cut(s) 457
BmsI GCATC 2 cut(s) 7, 21
BmuI ACTGGG 1 cut(s) 457
Bpu10I CCTNAGC 1 cut(s) 27
Bpu1102I GCTNAGC 1 cut(s) 504
Bsa29I ATCGAT 1 cut(s) 15
BsaI GGTCTC 1 cut(s) 482
BsaWI WCCGGW 2 cut(s) 225, 325
Bsc4I CCNNNNNNNGG 3 cut(s) 141, 325, 447
Bse1I ACTGG 1 cut(s) 452
Bse3DI GCAATG 1 cut(s) 282
BseAI TCCGGA 1 cut(s) 325
BseBI CCWGG 2 cut(s) 181, 194
BseCI ATCGAT 1 cut(s) 15
BseGI GGATG 2 cut(s) 42, 245
BseLI CCNNNNNNNGG 3 cut(s) 141, 325, 447
BseMI GCAATG 1 cut(s) 282
BseMII CTCAG 3 cut(s) 18, 294, 513
BseNI ACTGG 1 cut(s) 452
BseRI GAGGAG 1 cut(s) 389
BseSI GKGCMC 1 cut(s) 129
BseXI GCAGC 5 cut(s) 102, 148, 349, 424, 532
BsgI GTGCAG 1 cut(s) 115
Bsh1236I CGCG 2 cut(s) 74, 342
BshFI GGCC 2 cut(s) 158, 395
BshVI ATCGAT 1 cut(s) 15
BsiSI CCGG 2 cut(s) 226, 326
BslI CCNNNNNNNGG 3 cut(s) 141, 325, 447
BsmAI GTCTC 2 cut(s) 270, 482
BsnI GGCC 2 cut(s) 158, 395
Bso31I GGTCTC 1 cut(s) 482
Bsp1286I GDGCHC 1 cut(s) 129
Bsp13I TCCGGA 1 cut(s) 325
Bsp143I GATC 2 cut(s) 289, 387
Bsp1720I GCTNAGC 1 cut(s) 504
BspACI CCGC 2 cut(s) 74, 159
BspANI GGCC 2 cut(s) 158, 395
BspCNI CTCAG 3 cut(s) 19, 295, 514
BspDI ATCGAT 1 cut(s) 15
BspEI TCCGGA 1 cut(s) 325
BspFNI CGCG 2 cut(s) 74, 342
BspMAI CTGCAG 1 cut(s) 550
BspPI GGATC 1 cut(s) 395
BspTNI GGTCTC 1 cut(s) 482
BsrDI GCAATG 1 cut(s) 282
BsrI ACTGG 1 cut(s) 452
BssMI GATC 2 cut(s) 289, 387
Bst2UI CCWGG 2 cut(s) 181, 194
Bst4CI ACNGT 2 cut(s) 115, 177
Bst6I CTCTTC 1 cut(s) 326
BstAPI GCANNNNNTGC 1 cut(s) 57
BstDEI CTNAG 4 cut(s) 27, 303, 504, 522
BstF5I GGATG 2 cut(s) 42, 245
BstFNI CGCG 2 cut(s) 74, 342
BstHHI GCGC 2 cut(s) 342, 454
BstKTI GATC 2 cut(s) 292, 390
BstMAI GTCTC 2 cut(s) 270, 482
BstMBI GATC 2 cut(s) 289, 387
BstMWI GCNNNNNNNGC 1 cut(s) 57
BstNI CCWGG 2 cut(s) 181, 194
BstSCI CCNGG 2 cut(s) 179, 192
BstSFI CTRYAG 1 cut(s) 546
BstSLI GKGCMC 1 cut(s) 129
BstUI CGCG 2 cut(s) 74, 342
BstV1I GCAGC 5 cut(s) 102, 148, 349, 424, 532
Bsu15I ATCGAT 1 cut(s) 15
BsuRI GGCC 2 cut(s) 158, 395
BsuTUI ATCGAT 1 cut(s) 15
BtsCI GGATG 2 cut(s) 42, 245
BtsI GCAGTG 2 cut(s) 127, 432
BtsIMutI CAGTG 4 cut(s) 127, 173, 300, 432
CaiI CAGNNNCTG 1 cut(s) 175
CfoI GCGC 2 cut(s) 342, 454
Cfr13I GGNCC 1 cut(s) 144
ClaI ATCGAT 1 cut(s) 15
Csp6I GTAC 2 cut(s) 344, 551
CviAII CATG 2 cut(s) 87, 154
CviQI GTAC 2 cut(s) 344, 551
DdeI CTNAG 4 cut(s) 27, 303, 504, 522
DpnI GATC 2 cut(s) 291, 389
DpnII GATC 2 cut(s) 289, 387
EaeI YGGCCR 1 cut(s) 156
Eam1104I CTCTTC 1 cut(s) 326
EarI CTCTTC 1 cut(s) 326
Eco31I GGTCTC 1 cut(s) 482
Eco47I GGWCC 1 cut(s) 144
EcoRII CCWGG 2 cut(s) 179, 192
FaeI CATG 2 cut(s) 90, 157
FaiI YATR 8 cut(s) 88, 155, 210, 357, 368, 417, 465, 536
FatI CATG 2 cut(s) 86, 153
Fnu4HI GCNGC 7 cut(s) 10, 91, 159, 162, 338, 438, 546
FokI GGATG 2 cut(s) 29, 232
Fsp4HI GCNGC 7 cut(s) 10, 91, 159, 162, 338, 438, 546
GlaI GCGC 2 cut(s) 341, 453
GluI GCNGC 7 cut(s) 10, 91, 159, 162, 338, 438, 546
HaeIII GGCC 2 cut(s) 158, 395
HapII CCGG 2 cut(s) 226, 326
HhaI GCGC 2 cut(s) 342, 454
Hin1II CATG 2 cut(s) 90, 157
Hin6I GCGC 2 cut(s) 340, 452
HinP1I GCGC 2 cut(s) 340, 452
HincII GTYRAC 1 cut(s) 316
HindII GTYRAC 1 cut(s) 316
HindIII AAGCTT 1 cut(s) 423
HinfI GANTC 3 cut(s) 233, 278, 379
HpaII CCGG 2 cut(s) 226, 326
HphI GGTGA 1 cut(s) 88
Hpy166II GTNNAC 2 cut(s) 151, 316
Hpy188I TCNGA 3 cut(s) 119, 384, 523
Hpy188III TCNNGA 2 cut(s) 109, 326
Hpy8I GTNNAC 2 cut(s) 151, 316
HpyCH4III ACNGT 2 cut(s) 115, 177
HpyCH4V TGCA 8 cut(s) 12, 51, 60, 90, 132, 269, 287, 548
HpyF10VI GCNNNNNNNGC 1 cut(s) 57
HpyF3I CTNAG 4 cut(s) 27, 303, 504, 522
Hsp92II CATG 2 cut(s) 90, 157
HspAI GCGC 2 cut(s) 340, 452
Kpn2I TCCGGA 1 cut(s) 325
Kzo9I GATC 2 cut(s) 289, 387
Lsp1109I GCAGC 5 cut(s) 102, 148, 349, 424, 532
LweI GCATC 2 cut(s) 7, 21
MaeIII GTNAC 2 cut(s) 109, 171
MalI GATC 2 cut(s) 291, 389
MboI GATC 2 cut(s) 289, 387
MboII GAAGA 2 cut(s) 274, 343
MhlI GDGCHC 1 cut(s) 129
MluCI AATT 1 cut(s) 220
MlyI GAGTC 1 cut(s) 272
MmeI TCCRAC 1 cut(s) 465
MnlI CCTC 8 cut(s) 298, 327, 333, 358, 367, 378, 471, 534
MroI TCCGGA 1 cut(s) 325
MspA1I CMGCKG 1 cut(s) 161
MspI CCGG 2 cut(s) 226, 326
MspR9I CCNGG 2 cut(s) 181, 194
MvaI CCWGG 2 cut(s) 181, 194
MvnI CGCG 2 cut(s) 74, 342
MwoI GCNNNNNNNGC 1 cut(s) 57
NdeII GATC 2 cut(s) 289, 387
NlaIII CATG 2 cut(s) 90, 157
NmuCI GTSAC 2 cut(s) 109, 171
PfeI GAWTC 2 cut(s) 233, 379
PflMI CCANNNNNTGG 2 cut(s) 141, 447
PkrI GCNGC 7 cut(s) 11, 92, 160, 163, 339, 439, 547
PleI GAGTC 1 cut(s) 272
PpsI GAGTC 1 cut(s) 272
PsiI TTATAA 1 cut(s) 357
Psp6I CCWGG 2 cut(s) 179, 192
PspGI CCWGG 2 cut(s) 179, 192
PspPI GGNCC 1 cut(s) 144
PstI CTGCAG 1 cut(s) 550
PstNI CAGNNNCTG 1 cut(s) 175
RsaI GTAC 2 cut(s) 345, 552
RsaNI GTAC 2 cut(s) 344, 551
SatI GCNGC 7 cut(s) 10, 91, 159, 162, 338, 438, 546
Sau3AI GATC 2 cut(s) 289, 387
Sau96I GGNCC 1 cut(s) 144
ScaI AGTACT 1 cut(s) 552
SchI GAGTC 1 cut(s) 272
ScrFI CCNGG 2 cut(s) 181, 194
SduI GDGCHC 1 cut(s) 129
SetI ASST 5 cut(s) 11, 325, 427, 505, 510
SfaNI GCATC 2 cut(s) 7, 21
SfcI CTRYAG 1 cut(s) 546
SinI GGWCC 1 cut(s) 144
Sse9I AATT 1 cut(s) 220
SsiI CCGC 2 cut(s) 74, 159
SspI AATATT 1 cut(s) 64
StyD4I CCNGG 2 cut(s) 179, 192
TaaI ACNGT 2 cut(s) 115, 177
TaqI TCGA 3 cut(s) 5, 15, 539
TasI AATT 1 cut(s) 220
TatI WGTACW 1 cut(s) 550
TauI GCSGC 1 cut(s) 161
TfiI GAWTC 2 cut(s) 233, 379
TscAI CASTG 4 cut(s) 134, 180, 307, 439
TseFI GTSAC 2 cut(s) 109, 171
TseI GCWGC 6 cut(s) 9, 90, 161, 337, 437, 545
Tsp45I GTSAC 2 cut(s) 109, 171
TspDTI ATGAA 3 cut(s) 231, 355, 458
TspGWI ACGGA 1 cut(s) 136
TspRI CASTG 4 cut(s) 134, 180, 307, 439
Van91I CCANNNNNTGG 2 cut(s) 141, 447
VpaK11BI GGWCC 1 cut(s) 144
ZrmI AGTACT 1 cut(s) 552
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.