Rh2DG036200

Axial regulator YABBY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0009026
Physical Location & Seq
Forward (+)
2468452 .. 2472422
3971 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG036200.1

Sequence Viewer

Length: 432 bp
ATGGTGCTAGTTAAAGCCTTCTTTTCCTGCTCTCTCACTGCTCCCAAAAAACAAAGCTTAAATAACGCACAAAACCAAAACGCACAGAATTACCGGATTGATTCGGGTTCATCATCCAAGGGCAACAAGAAGATTGCAACCAGAGACTCCATTGCAGTTCATCATGCCACTGAGGAAAGGGGTGTCAACCGACCTCCCGAGAAGAGGCAGCGCGTACCCTCTGCTTATAACCAGTTCATAAAGGAGGAGATTCAGAGGATCAAGGCCAATAACCCTGATATTAGCCATAGAGAAGCTTTCAGCACTGCTGCCAAAAATTGGGCGCACTTCCCTCATATTCACTTTGGGCTGATGTTGGAGACCAACAATCAGGCTAAGCTGGACAATGGCTCTGAGAAACATCTTCTGTCGAGGGCTGCACTACTGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YABBY

Protein Analysis

143

Amino Acids

16.1

Weight (kDa)

10.06

Isoelectric Point (pI)

35.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YABBY PF04690 58 - 116 4.9e-38 YABBY protein, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 228
AccB7I CCANNNNNTGG 1 cut(s) 318
AccII CGCG 1 cut(s) 213
AclWI GGATC 1 cut(s) 266
AfaI GTAC 1 cut(s) 216
AfiI CCNNNNNNNGG 2 cut(s) 204, 318
AluBI AGCT 3 cut(s) 57, 296, 379
AluI AGCT 3 cut(s) 57, 296, 379
Alw26I GTCTC 2 cut(s) 138, 353
AlwI GGATC 1 cut(s) 266
Ama87I CYCGRG 1 cut(s) 197
AoxI GGCC 1 cut(s) 264
ApeKI GCWGC 3 cut(s) 208, 308, 416
AspLEI GCGC 2 cut(s) 213, 325
AvaI CYCGRG 1 cut(s) 197
BbvI GCAGC 3 cut(s) 220, 295, 403
BcoDI GTCTC 2 cut(s) 138, 353
BfaI CTAG 1 cut(s) 8
BisI GCNGC 3 cut(s) 209, 309, 417
BlpI GCTNAGC 1 cut(s) 375
BlsI GCNGC 3 cut(s) 210, 310, 418
BmeT110I CYCGRG 1 cut(s) 197
Bpu1102I GCTNAGC 1 cut(s) 375
BsaI GGTCTC 1 cut(s) 353
BsaJI CCNNGG 1 cut(s) 117
BsaWI WCCGGW 1 cut(s) 93
Bsc4I CCNNNNNNNGG 2 cut(s) 204, 318
Bse1I ACTGG 1 cut(s) 232
Bse3DI GCAATG 1 cut(s) 150
BseDI CCNNGG 1 cut(s) 117
BseGI GGATG 1 cut(s) 113
BseLI CCNNNNNNNGG 2 cut(s) 204, 318
BseMI GCAATG 1 cut(s) 150
BseMII CTCAG 2 cut(s) 162, 384
BseNI ACTGG 1 cut(s) 232
BseRI GAGGAG 1 cut(s) 260
BseXI GCAGC 3 cut(s) 220, 295, 403
BsgI GTGCAG 1 cut(s) 402
Bsh1236I CGCG 1 cut(s) 213
BshFI GGCC 1 cut(s) 266
BsiHKCI CYCGRG 1 cut(s) 197
BsiSI CCGG 1 cut(s) 94
BslI CCNNNNNNNGG 2 cut(s) 204, 318
BsmAI GTCTC 2 cut(s) 138, 353
BsnI GGCC 1 cut(s) 266
Bso31I GGTCTC 1 cut(s) 353
BsoBI CYCGRG 1 cut(s) 197
Bsp143I GATC 1 cut(s) 258
Bsp1720I GCTNAGC 1 cut(s) 375
BspANI GGCC 1 cut(s) 266
BspCNI CTCAG 2 cut(s) 163, 385
BspFNI CGCG 1 cut(s) 213
BspPI GGATC 1 cut(s) 266
BspTNI GGTCTC 1 cut(s) 353
BsrDI GCAATG 1 cut(s) 150
BsrI ACTGG 1 cut(s) 232
BssECI CCNNGG 1 cut(s) 117
BssMI GATC 1 cut(s) 258
BssT1I CCWWGG 1 cut(s) 117
Bst6I CTCTTC 1 cut(s) 197
BstDEI CTNAG 3 cut(s) 171, 375, 393
BstF5I GGATG 1 cut(s) 113
BstFNI CGCG 1 cut(s) 213
BstHHI GCGC 2 cut(s) 213, 325
BstKTI GATC 1 cut(s) 261
BstMAI GTCTC 2 cut(s) 138, 353
BstMBI GATC 1 cut(s) 258
BstUI CGCG 1 cut(s) 213
BstV1I GCAGC 3 cut(s) 220, 295, 403
BsuRI GGCC 1 cut(s) 266
BtsCI GGATG 1 cut(s) 113
BtsI GCAGTG 2 cut(s) 36, 303
BtsIMutI CAGTG 3 cut(s) 36, 168, 303
CfoI GCGC 2 cut(s) 213, 325
Csp6I GTAC 1 cut(s) 215
CviAII CATG 1 cut(s) 164
CviQI GTAC 1 cut(s) 215
DdeI CTNAG 3 cut(s) 171, 375, 393
DpnI GATC 1 cut(s) 260
DpnII GATC 1 cut(s) 258
Eam1104I CTCTTC 1 cut(s) 197
EarI CTCTTC 1 cut(s) 197
Eco130I CCWWGG 1 cut(s) 117
Eco31I GGTCTC 1 cut(s) 353
Eco88I CYCGRG 1 cut(s) 197
EcoT14I CCWWGG 1 cut(s) 117
ErhI CCWWGG 1 cut(s) 117
FaeI CATG 1 cut(s) 167
FaiI YATR 5 cut(s) 165, 228, 239, 288, 336
FatI CATG 1 cut(s) 163
Fnu4HI GCNGC 3 cut(s) 209, 309, 417
FokI GGATG 1 cut(s) 100
Fsp4HI GCNGC 3 cut(s) 209, 309, 417
FspBI CTAG 1 cut(s) 8
GlaI GCGC 2 cut(s) 212, 324
GluI GCNGC 3 cut(s) 209, 309, 417
HaeIII GGCC 1 cut(s) 266
HapII CCGG 1 cut(s) 94
HhaI GCGC 2 cut(s) 213, 325
Hin1II CATG 1 cut(s) 167
Hin6I GCGC 2 cut(s) 211, 323
HinP1I GCGC 2 cut(s) 211, 323
HincII GTYRAC 1 cut(s) 187
HindII GTYRAC 1 cut(s) 187
HindIII AAGCTT 2 cut(s) 55, 294
HinfI GANTC 3 cut(s) 101, 146, 250
HpaII CCGG 1 cut(s) 94
Hpy166II GTNNAC 1 cut(s) 187
Hpy188I TCNGA 2 cut(s) 255, 394
Hpy188III TCNNGA 1 cut(s) 197
Hpy8I GTNNAC 1 cut(s) 187
HpyAV CCTTC 1 cut(s) 28
HpyCH4V TGCA 3 cut(s) 137, 155, 419
HpyF3I CTNAG 3 cut(s) 171, 375, 393
Hsp92II CATG 1 cut(s) 167
HspAI GCGC 2 cut(s) 211, 323
Kzo9I GATC 1 cut(s) 258
LmnI GCTCC 1 cut(s) 46
LpnPI CCDG 7 cut(s) 40, 107, 154, 245, 288, 356, 365
Lsp1109I GCAGC 3 cut(s) 220, 295, 403
MaeI CTAG 1 cut(s) 8
MalI GATC 1 cut(s) 260
MboI GATC 1 cut(s) 258
MboII GAAGA 3 cut(s) 142, 214, 395
MluCI AATT 2 cut(s) 88, 316
MlyI GAGTC 1 cut(s) 140
MmeI TCCRAC 1 cut(s) 336
MnlI CCTC 8 cut(s) 166, 198, 204, 229, 238, 249, 342, 405
MseI TTAA 2 cut(s) 12, 59
MspI CCGG 1 cut(s) 94
MvnI CGCG 1 cut(s) 213
NdeII GATC 1 cut(s) 258
NlaIII CATG 1 cut(s) 167
PfeI GAWTC 2 cut(s) 101, 250
PflMI CCANNNNNTGG 1 cut(s) 318
PkrI GCNGC 3 cut(s) 210, 310, 418
PleI GAGTC 1 cut(s) 140
PpsI GAGTC 1 cut(s) 140
PsiI TTATAA 1 cut(s) 228
RsaI GTAC 1 cut(s) 216
RsaNI GTAC 1 cut(s) 215
SaqAI TTAA 2 cut(s) 12, 59
SatI GCNGC 3 cut(s) 209, 309, 417
Sau3AI GATC 1 cut(s) 258
SchI GAGTC 1 cut(s) 140
SetI ASST 4 cut(s) 59, 196, 298, 381
Sse9I AATT 2 cut(s) 88, 316
SspMI CTAG 1 cut(s) 8
StyI CCWWGG 1 cut(s) 117
TaqI TCGA 1 cut(s) 410
TasI AATT 2 cut(s) 88, 316
TfiI GAWTC 2 cut(s) 101, 250
Tru1I TTAA 2 cut(s) 12, 59
Tru9I TTAA 2 cut(s) 12, 59
TscAI CASTG 3 cut(s) 43, 175, 310
TseI GCWGC 3 cut(s) 208, 308, 416
TspDTI ATGAA 3 cut(s) 99, 149, 226
TspRI CASTG 3 cut(s) 43, 175, 310
Van91I CCANNNNNTGG 1 cut(s) 318
XspI CTAG 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.