Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0009026

Physical Location & Seq

Genomic Coordinates Reverse (-)

20913286 .. 20916738

Gene Structure 3453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G245200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGACCAGCTGCATCGATGTTGCGACTGAGCAACTCTGCTACATCCCCTGCAACTTTTGCAATATTGTTCTCGCGGTGAGTGTTCCATGCAGCAGCCTACTCGACATTGTGACAGTTCGATGCGGGCACTGCACCAATTTATGGTCCGTGAACATGGCCGCTGCCTTTCAGTCACTGTGGCCAGATGTCCAGGCACAAAACTACAACTATAACGCGCAGAATTACCGGATTGAGTCAGGTTCCTCATCCAAATGCAACAAGAAGATTGCAACCAGAGACCCCACTGCAGATCATGTCACTGAGGAAAGGGGTGTGAACCGACCTCCCGAGAAGAGGCAACGTGTACCTTCTGCATATAACCAGTTCATAAAGGAGGAAATTCAGAGGATCAAGGCCAATAATCCAGATATTAGCCATAGAGAGGCTTTCAGCACTGCTGCCAAAAACTGGGCGCACTTCCCTCACATTCATTTTGGGCTGATGTTGGAGACTAACAATCAGCCTAAGCTGGACAATGACTCTGAGAAACATCTTATTTCAAGGGCTGCACTGCTGAATAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YABBY

Protein Analysis

188

Amino Acids

21.15

Weight (kDa)

8.12

Isoelectric Point (pI)

40.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009026)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26580 AT2G26580
fragaria_vesca	FvH4_1g03040 FvH4_1g03040 FvH4_1g03040 FvH4_1g03040 FvH4_1g03040
malus_domestica	MD02G1029700.v1.1 MD15G1171100.v1.1
prunus_persica	Prupe.7G245200_v2.0.a1 Prupe.7G245200_v2.0.a1
pyrus_communis	pycom02g02470
rosa_chinensis	RchiOBHm_Chr2g0088171
rosa_laevigata	RLG00000015928
rosa_multiflora	Rmu_sc0003275.1_g000065
rosa_roxburghii	Rroxscaffold_2G00152870
rosa_rugosa	Rorug01G0481400
rosa_samantha	Rh2AG036500 Rh2BG035700 Rh2CG036800 Rh2DG036200
rosa_wichuraiana	Rw2G002870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	141, 447
AccII	CGCG	2 cut(s)	74, 215
AciI	CCGC	3 cut(s)	74, 123, 159
AclWI	GGATC	1 cut(s)	395
AcoI	YGGCCR	2 cut(s)	156, 179
AcsI	RAATTY	1 cut(s)	378
AfaI	GTAC	1 cut(s)	345
AfiI	CCNNNNNNNGG	4 cut(s)	141, 333, 421, 447
AflIII	ACRYGT	1 cut(s)	340
AgsI	TTSAA	1 cut(s)	540
AjnI	CCWGG	1 cut(s)	189
AluBI	AGCT	2 cut(s)	9, 508
AluI	AGCT	2 cut(s)	9, 508
Alw26I	GTCTC	2 cut(s)	270, 482
AlwI	GGATC	1 cut(s)	395
AlwNI	CAGNNNCTG	1 cut(s)	175
Ama87I	CYCGRG	1 cut(s)	326
AoxI	GGCC	3 cut(s)	156, 179, 393
ApeKI	GCWGC	6 cut(s)	9, 90, 93, 161, 437, 545
ApoI	RAATTY	1 cut(s)	378
AspLEI	GCGC	2 cut(s)	217, 454
AspS9I	GGNCC	1 cut(s)	144
AsuHPI	GGTGA	1 cut(s)	88
AvaI	CYCGRG	1 cut(s)	326
AvaII	GGWCC	1 cut(s)	144
BaeGI	GKGCMC	1 cut(s)	129
BalI	TGGCCA	1 cut(s)	181
BbvI	GCAGC	5 cut(s)	102, 105, 148, 424, 532
BcgI	CGANNNNNNTGC	2 cut(s)	82, 116
BciT130I	CCWGG	1 cut(s)	191
BcoDI	GTCTC	2 cut(s)	270, 482
BfmI	CTRYAG	1 cut(s)	285
BisI	GCNGC	7 cut(s)	10, 91, 94, 159, 162, 438, 546
BlsI	GCNGC	7 cut(s)	11, 92, 95, 160, 163, 439, 547
Bme1390I	CCNGG	1 cut(s)	191
Bme18I	GGWCC	1 cut(s)	144
BmeT110I	CYCGRG	1 cut(s)	326
BmgT120I	GGNCC	1 cut(s)	144
BmiI	GGNNCC	1 cut(s)	241
BmrFI	CCNGG	1 cut(s)	191
BmrI	ACTGGG	1 cut(s)	457
BmsI	GCATC	2 cut(s)	21, 110
BmuI	ACTGGG	1 cut(s)	457
Bpu10I	CCTNAGC	1 cut(s)	504
Bsa29I	ATCGAT	1 cut(s)	15
BsaI	GGTCTC	1 cut(s)	270
BsaWI	WCCGGW	1 cut(s)	225
Bsc4I	CCNNNNNNNGG	4 cut(s)	141, 333, 421, 447
Bse1I	ACTGG	2 cut(s)	361, 452
BseBI	CCWGG	1 cut(s)	191
BseCI	ATCGAT	1 cut(s)	15
BseGI	GGATG	2 cut(s)	42, 245
BseLI	CCNNNNNNNGG	4 cut(s)	141, 333, 421, 447
BseMII	CTCAG	3 cut(s)	18, 291, 513
BseNI	ACTGG	2 cut(s)	361, 452
BseSI	GKGCMC	1 cut(s)	129
BseXI	GCAGC	5 cut(s)	102, 105, 148, 424, 532
BsgI	GTGCAG	2 cut(s)	115, 531
Bsh1236I	CGCG	2 cut(s)	74, 215
BshFI	GGCC	3 cut(s)	158, 181, 395
BshVI	ATCGAT	1 cut(s)	15
BsiHKCI	CYCGRG	1 cut(s)	326
BsiSI	CCGG	1 cut(s)	226
BslI	CCNNNNNNNGG	4 cut(s)	141, 333, 421, 447
BsmAI	GTCTC	2 cut(s)	270, 482
BsnI	GGCC	3 cut(s)	158, 181, 395
Bso31I	GGTCTC	1 cut(s)	270
BsoBI	CYCGRG	1 cut(s)	326
Bsp1286I	GDGCHC	1 cut(s)	129
Bsp143I	GATC	2 cut(s)	289, 387
BspACI	CCGC	3 cut(s)	74, 123, 159
BspANI	GGCC	3 cut(s)	158, 181, 395
BspCNI	CTCAG	3 cut(s)	19, 292, 514
BspDI	ATCGAT	1 cut(s)	15
BspFNI	CGCG	2 cut(s)	74, 215
BspLI	GGNNCC	1 cut(s)	241
BspMAI	CTGCAG	1 cut(s)	289
BspPI	GGATC	1 cut(s)	395
BspTNI	GGTCTC	1 cut(s)	270
BsrI	ACTGG	2 cut(s)	361, 452
BssMI	GATC	2 cut(s)	289, 387
Bst2UI	CCWGG	1 cut(s)	191
Bst4CI	ACNGT	2 cut(s)	115, 177
Bst6I	CTCTTC	1 cut(s)	326
BstAPI	GCANNNNNTGC	1 cut(s)	57
BstC8I	GCNNGC	1 cut(s)	125
BstDEI	CTNAG	4 cut(s)	27, 300, 504, 522
BstF5I	GGATG	2 cut(s)	42, 245
BstFNI	CGCG	2 cut(s)	74, 215
BstHHI	GCGC	2 cut(s)	217, 454
BstKTI	GATC	2 cut(s)	292, 390
BstMAI	GTCTC	2 cut(s)	270, 482
BstMBI	GATC	2 cut(s)	289, 387
BstMWI	GCNNNNNNNGC	2 cut(s)	57, 129
BstNI	CCWGG	1 cut(s)	191
BstSCI	CCNGG	1 cut(s)	189
BstSFI	CTRYAG	1 cut(s)	285
BstSLI	GKGCMC	1 cut(s)	129
BstUI	CGCG	2 cut(s)	74, 215
BstV1I	GCAGC	5 cut(s)	102, 105, 148, 424, 532
Bsu15I	ATCGAT	1 cut(s)	15
BsuRI	GGCC	3 cut(s)	158, 181, 395
BsuTUI	ATCGAT	1 cut(s)	15
BtsCI	GGATG	2 cut(s)	42, 245
BtsI	GCAGTG	4 cut(s)	127, 282, 432, 548
BtsIMutI	CAGTG	6 cut(s)	127, 173, 282, 297, 432, 548
Cac8I	GCNNGC	1 cut(s)	125
CaiI	CAGNNNCTG	1 cut(s)	175
CfoI	GCGC	2 cut(s)	217, 454
Cfr13I	GGNCC	1 cut(s)	144
ClaI	ATCGAT	1 cut(s)	15
Csp6I	GTAC	1 cut(s)	344
CviAII	CATG	3 cut(s)	87, 154, 293
CviQI	GTAC	1 cut(s)	344
DdeI	CTNAG	4 cut(s)	27, 300, 504, 522
DpnI	GATC	2 cut(s)	291, 389
DpnII	GATC	2 cut(s)	289, 387
EaeI	YGGCCR	2 cut(s)	156, 179
Eam1104I	CTCTTC	1 cut(s)	326
EarI	CTCTTC	1 cut(s)	326
Eco31I	GGTCTC	1 cut(s)	270
Eco47I	GGWCC	1 cut(s)	144
Eco88I	CYCGRG	1 cut(s)	326
EcoRII	CCWGG	1 cut(s)	189
FaeI	CATG	3 cut(s)	90, 157, 296
FaiI	YATR	9 cut(s)	88, 142, 155, 210, 294, 355, 357, 368, 417
FatI	CATG	3 cut(s)	86, 153, 292
FauI	CCCGC	1 cut(s)	116
Fnu4HI	GCNGC	7 cut(s)	10, 91, 94, 159, 162, 438, 546
FokI	GGATG	2 cut(s)	29, 232
Fsp4HI	GCNGC	7 cut(s)	10, 91, 94, 159, 162, 438, 546
GlaI	GCGC	2 cut(s)	216, 453
GluI	GCNGC	7 cut(s)	10, 91, 94, 159, 162, 438, 546
HaeIII	GGCC	3 cut(s)	158, 181, 395
HapII	CCGG	1 cut(s)	226
HhaI	GCGC	2 cut(s)	217, 454
Hin1II	CATG	3 cut(s)	90, 157, 296
Hin6I	GCGC	2 cut(s)	215, 452
HinP1I	GCGC	2 cut(s)	215, 452
HinfI	GANTC	2 cut(s)	233, 518
HpaII	CCGG	1 cut(s)	226
HphI	GGTGA	1 cut(s)	88
Hpy166II	GTNNAC	3 cut(s)	151, 316, 344
Hpy188I	TCNGA	2 cut(s)	384, 523
Hpy188III	TCNNGA	2 cut(s)	326, 404
Hpy8I	GTNNAC	3 cut(s)	151, 316, 344
HpyAV	CCTTC	1 cut(s)	357
HpyCH4III	ACNGT	2 cut(s)	115, 177
HpyCH4IV	ACGT	1 cut(s)	340
HpyF10VI	GCNNNNNNNGC	2 cut(s)	57, 129
HpyF3I	CTNAG	4 cut(s)	27, 300, 504, 522
HpySE526I	ACGT	1 cut(s)	340
Hsp92II	CATG	3 cut(s)	90, 157, 296
HspAI	GCGC	2 cut(s)	215, 452
Kzo9I	GATC	2 cut(s)	289, 387
Lsp1109I	GCAGC	5 cut(s)	102, 105, 148, 424, 532
LweI	GCATC	2 cut(s)	21, 110
MaeII	ACGT	1 cut(s)	340
MaeIII	GTNAC	3 cut(s)	109, 171, 295
MalI	GATC	2 cut(s)	291, 389
MboI	GATC	2 cut(s)	289, 387
MboII	GAAGA	2 cut(s)	274, 343
MhlI	GDGCHC	1 cut(s)	129
MlsI	TGGCCA	1 cut(s)	181
MluCI	AATT	3 cut(s)	136, 220, 378
MluNI	TGGCCA	1 cut(s)	181
MlyI	GAGTC	2 cut(s)	242, 512
MmeI	TCCRAC	1 cut(s)	465
MnlI	CCTC	8 cut(s)	253, 295, 327, 333, 367, 378, 415, 471
Mox20I	TGGCCA	1 cut(s)	181
MscI	TGGCCA	1 cut(s)	181
MslI	CAYNNNNRTG	1 cut(s)	250
Msp20I	TGGCCA	1 cut(s)	181
MspA1I	CMGCKG	2 cut(s)	9, 161
MspI	CCGG	1 cut(s)	226
MspR9I	CCNGG	1 cut(s)	191
MvaI	CCWGG	1 cut(s)	191
MvnI	CGCG	2 cut(s)	74, 215
MwoI	GCNNNNNNNGC	2 cut(s)	57, 129
NdeII	GATC	2 cut(s)	289, 387
NlaIII	CATG	3 cut(s)	90, 157, 296
NlaIV	GGNNCC	1 cut(s)	241
NmuCI	GTSAC	3 cut(s)	109, 171, 295
PflMI	CCANNNNNTGG	2 cut(s)	141, 447
PkrI	GCNGC	7 cut(s)	11, 92, 95, 160, 163, 439, 547
PleI	GAGTC	2 cut(s)	241, 512
PpsI	GAGTC	2 cut(s)	241, 512
Psp6I	CCWGG	1 cut(s)	189
PspGI	CCWGG	1 cut(s)	189
PspN4I	GGNNCC	1 cut(s)	241
PspPI	GGNCC	1 cut(s)	144
PstI	CTGCAG	1 cut(s)	289
PstNI	CAGNNNCTG	1 cut(s)	175
PvuII	CAGCTG	1 cut(s)	9
RsaI	GTAC	1 cut(s)	345
RsaNI	GTAC	1 cut(s)	344
RseI	CAYNNNNRTG	1 cut(s)	250
SatI	GCNGC	7 cut(s)	10, 91, 94, 159, 162, 438, 546
Sau3AI	GATC	2 cut(s)	289, 387
Sau96I	GGNCC	1 cut(s)	144
SchI	GAGTC	2 cut(s)	242, 512
ScrFI	CCNGG	1 cut(s)	191
SduI	GDGCHC	1 cut(s)	129
SetI	ASST	6 cut(s)	11, 241, 325, 343, 349, 510
SfaNI	GCATC	2 cut(s)	21, 110
SfcI	CTRYAG	1 cut(s)	285
SinI	GGWCC	1 cut(s)	144
SmiMI	CAYNNNNRTG	1 cut(s)	250
Sse9I	AATT	3 cut(s)	136, 220, 378
SsiI	CCGC	3 cut(s)	74, 123, 159
SspI	AATATT	1 cut(s)	64
StyD4I	CCNGG	1 cut(s)	189
TaaI	ACNGT	2 cut(s)	115, 177
TaiI	ACGT	1 cut(s)	343
TaqI	TCGA	3 cut(s)	15, 102, 118
TasI	AATT	3 cut(s)	136, 220, 378
TauI	GCSGC	1 cut(s)	161
TscAI	CASTG	6 cut(s)	134, 180, 289, 304, 439, 555
TseFI	GTSAC	3 cut(s)	109, 171, 295
TseI	GCWGC	6 cut(s)	9, 90, 93, 161, 437, 545
Tsp45I	GTSAC	3 cut(s)	109, 171, 295
TspDTI	ATGAA	2 cut(s)	355, 458
TspGWI	ACGGA	1 cut(s)	136
TspRI	CASTG	6 cut(s)	134, 180, 289, 304, 439, 555
Van91I	CCANNNNNTGG	2 cut(s)	141, 447
VpaK11BI	GGWCC	1 cut(s)	144
XapI	RAATTY	1 cut(s)	378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.