Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006241

Physical Location & Seq

Genomic Coordinates Reverse (-)

11310957 .. 11315524

Gene Structure 4568 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G26590.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGAGTTCAAGCGAAGCGTTTCCCGTGATGCAGGAGATCATGCTTGAGTTTCGTGCTGGGAAGATGTCTTTGCAGGGAACAAGAGTTGTCCCTGATGCACGAAAAGGACTTGTCCGCATAGCTAGAGGTGACGAGGGACTGATTCATTTCCAGTGGCTTGATCGAAACCAGAATACAGTAGAAGATGATCAAATTGTTTTCCCAGATGAAGCTCTATTTGAAAAGGTTAATCAATCCTCAGACAGGGTGTATATTCTGAAGTTCAACAGTGATGACCGCAAGTTATTCTTCTGGATGCAGGAGCCAAGAGCTGAAGGTGATGCAGAATTGTGCTCTTCAGTCAATCAATACCTCAATCAACCACTAGAGTTTCCTGGTGAAGAAGGACTTGCAGCTGCTATCACGGAGGAGCTGGAAGACATGGCAGAGGATAATACATCATCTAGAGCGGGAAACTTGGTTGTACCAAATTTGTCTTCAGAGGTGAGTGACGTGACATCGTCCTCTGGACCGGTTAAGCTGGCAGACCTGCAAAGAATTCTGAACAACCTCTCTGGTGGCCCTGTAGGTATTGCTGGAGATCAAGACGAAGGTTTAGCATTAGGGGATATCTTGAAACCGGAGTTGATAATGCCATTGCTTGAGGCGTTGCCGGTACAAGAACGACTATCTTCGCATTTACCTGAGGGTCATTCTAGGGCAGAAGATATACTGGAGTTGTTGCAGAGCCCTCCTTTTCGTCAACAAGTAGATGCATTTACCTATGTACTCCGCACAGGACAAATAGATTTGACTCAGTTTGGTATAGACCCAAGTAAATACAAGTTCACAGTGGACTCATTCCTTGAAGCACTTGAAGACTCGGTTTCAACGCAATCAAGGGATGCGATGGATGAGAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005838 GO:0006508 GO:0006511 GO:0006807 GO:0008047 GO:0008150 GO:0008152 GO:0008541 GO:0009056 GO:0009057 GO:0009893 GO:0009987 GO:0010604 GO:0010950 GO:0010952 GO:0016043 GO:0016504 GO:0019222 GO:0019538 GO:0019941 GO:0022607 GO:0022624 GO:0030162 GO:0030163 GO:0030234 GO:0031323 GO:0031325 GO:0032182 GO:0032268 GO:0032270 GO:0032991 GO:0034622 GO:0043085 GO:0043130 GO:0043170 GO:0043248 GO:0043632 GO:0043933 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0044877 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051336 GO:0051345 GO:0051603 GO:0052547 GO:0052548 GO:0060255 GO:0061133 GO:0061134 GO:0061135 GO:0065003 GO:0065007 GO:0065009 GO:0070628 GO:0071704 GO:0071840 GO:0080090 GO:0098772 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

Proteasom_Rpn13 RPN13_C

Protein Analysis

300

Amino Acids

33.3

Weight (kDa)

4.32

Isoelectric Point (pI)

51.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rpn13_ADRM1_Pru	PF04683	15 - 111	1e-31	Proteasome complex subunit Rpn13, Pru domain
RPN13_C	PF16550	178 - 285	1.3e-25	UCH-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006241)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26590 AT2G26590 AT2G26590 AT2G26590
fragaria_vesca	FvH4_4g06040 FvH4_4g06040 FvH4_4g06040 FvH4_4g06040 FvH4_4g06040 FvH4_4g06040 FvH4_4g06040
malus_domestica	MD16G1238000.v1.1
prunus_persica	Prupe.1G063800_v2.0.a1 Prupe.1G063800_v2.0.a1 Prupe.1G063800_v2.0.a1 Prupe.1G063800_v2.0.a1
pyrus_communis	pycom16g19920
rosa_chinensis	RchiOBHm_Chr4g0397601
rosa_laevigata	RLG00000009425
rosa_multiflora	Rmu_sc0005653.1_g000003
rosa_roxburghii	Rroxscaffold_5G00342410
rosa_rugosa	Rorug03G0342400
rosa_samantha	Rh4AG079200 Rh4BG077100 Rh4CG084800 Rh4DG072200
rosa_wichuraiana	Rw4G006480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	537
AccBSI	CCGCTC	1 cut(s)	449
AciI	CCGC	4 cut(s)	115, 277, 449, 772
AcsI	RAATTY	2 cut(s)	469, 537
AcuI	CTGAAG	4 cut(s)	278, 321, 333, 462
AfaI	GTAC	3 cut(s)	465, 657, 768
AfiI	CCNNNNNNNGG	1 cut(s)	243
AgeI	ACCGGT	1 cut(s)	511
AgsI	TTSAA	7 cut(s)	9, 221, 265, 616, 848, 857, 870
AjiI	CACGTC	1 cut(s)	493
AjnI	CCWGG	1 cut(s)	373
AjuI	GAANNNNNNNTTGG	2 cut(s)	460, 492
AluBI	AGCT	6 cut(s)	122, 212, 311, 395, 412, 520
AluI	AGCT	6 cut(s)	122, 212, 311, 395, 412, 520
Alw21I	GWGCWC	1 cut(s)	335
AoxI	GGCC	1 cut(s)	559
ApeKI	GCWGC	2 cut(s)	392, 395
ApoI	RAATTY	2 cut(s)	469, 537
AsiGI	ACCGGT	1 cut(s)	511
Asp700I	GAANNNNTTC	1 cut(s)	18
AspS9I	GGNCC	2 cut(s)	509, 560
AsuHPI	GGTGA	4 cut(s)	140, 329, 389, 496
AvaII	GGWCC	1 cut(s)	509
AxyI	CCTNAGG	1 cut(s)	684
BanII	GRGCYC	1 cut(s)	731
BbsI	GAAGAC	3 cut(s)	423, 468, 864
Bbv12I	GWGCWC	1 cut(s)	335
BbvI	GCAGC	2 cut(s)	382, 404
BccI	CCATC	1 cut(s)	883
BciT130I	CCWGG	1 cut(s)	375
BclI	TGATCA	1 cut(s)	187
BfaI	CTAG	4 cut(s)	123, 365, 444, 696
BfmI	CTRYAG	1 cut(s)	564
BfuAI	ACCTGC	1 cut(s)	537
BisI	GCNGC	2 cut(s)	393, 396
BlsI	GCNGC	2 cut(s)	394, 397
Bme1390I	CCNGG	1 cut(s)	375
Bme18I	GGWCC	1 cut(s)	509
BmgBI	CACGTC	1 cut(s)	493
BmgT120I	GGNCC	2 cut(s)	509, 560
BmiI	GGNNCC	1 cut(s)	303
BmrFI	CCNGG	1 cut(s)	375
BmsI	GCATC	6 cut(s)	18, 85, 285, 310, 742, 874
BpiI	GAAGAC	3 cut(s)	423, 468, 864
BpmI	CTGGAG	2 cut(s)	597, 734
BpuEI	CTTGAG	2 cut(s)	65, 662
BsaWI	WCCGGW	2 cut(s)	511, 619
Bsc4I	CCNNNNNNNGG	1 cut(s)	243
Bse118I	RCCGGY	2 cut(s)	511, 652
Bse1I	ACTGG	2 cut(s)	151, 717
Bse21I	CCTNAGG	1 cut(s)	684
Bse3DI	GCAATG	1 cut(s)	635
BseBI	CCWGG	1 cut(s)	375
BseGI	GGATG	3 cut(s)	300, 889, 898
BseLI	CCNNNNNNNGG	1 cut(s)	243
BseMI	GCAATG	1 cut(s)	635
BseMII	CTCAG	3 cut(s)	252, 675, 809
BseNI	ACTGG	2 cut(s)	151, 717
BseRI	GAGGAG	1 cut(s)	422
BseXI	GCAGC	2 cut(s)	382, 404
BseYI	CCCAGC	1 cut(s)	56
BshFI	GGCC	1 cut(s)	561
BshTI	ACCGGT	1 cut(s)	511
BsiHKAI	GWGCWC	1 cut(s)	335
BsiSI	CCGG	3 cut(s)	512, 620, 653
BslFI	GGGAC	2 cut(s)	74, 150
BslI	CCNNNNNNNGG	1 cut(s)	243
BsmFI	GGGAC	2 cut(s)	74, 150
BsnI	GGCC	1 cut(s)	561
Bsp1286I	GDGCHC	2 cut(s)	335, 731
Bsp143I	GATC	4 cut(s)	36, 160, 187, 580
BspACI	CCGC	4 cut(s)	115, 277, 449, 772
BspANI	GGCC	1 cut(s)	561
BspCNI	CTCAG	3 cut(s)	251, 676, 808
BspLI	GGNNCC	1 cut(s)	303
BspMI	ACCTGC	1 cut(s)	537
BspQI	GCTCTTC	1 cut(s)	340
BsrBI	CCGCTC	1 cut(s)	449
BsrDI	GCAATG	1 cut(s)	635
BsrFI	RCCGGY	2 cut(s)	511, 652
BsrI	ACTGG	2 cut(s)	151, 717
BssAI	RCCGGY	2 cut(s)	511, 652
BssMI	GATC	4 cut(s)	36, 160, 187, 580
Bst2UI	CCWGG	1 cut(s)	375
Bst4CI	ACNGT	3 cut(s)	178, 269, 832
Bst6I	CTCTTC	1 cut(s)	340
BstC8I	GCNNGC	1 cut(s)	522
BstDEI	CTNAG	3 cut(s)	238, 684, 795
BstENI	CCTNNNNNAGG	1 cut(s)	241
BstF5I	GGATG	3 cut(s)	300, 889, 898
BstKTI	GATC	4 cut(s)	39, 163, 190, 583
BstMBI	GATC	4 cut(s)	36, 160, 187, 580
BstNI	CCWGG	1 cut(s)	375
BstSCI	CCNGG	1 cut(s)	373
BstSFI	CTRYAG	1 cut(s)	564
BstV1I	GCAGC	2 cut(s)	382, 404
BstV2I	GAAGAC	3 cut(s)	423, 468, 864
Bsu36I	CCTNAGG	1 cut(s)	684
BsuRI	GGCC	1 cut(s)	561
BtrI	CACGTC	1 cut(s)	493
BtsCI	GGATG	3 cut(s)	300, 889, 898
BtsIMutI	CAGTG	3 cut(s)	158, 274, 837
BveI	ACCTGC	1 cut(s)	537
Cac8I	GCNNGC	1 cut(s)	522
Cfr10I	RCCGGY	2 cut(s)	511, 652
Cfr13I	GGNCC	2 cut(s)	509, 560
Csp6I	GTAC	3 cut(s)	464, 656, 767
CspAI	ACCGGT	1 cut(s)	511
CviAII	CATG	2 cut(s)	40, 421
CviQI	GTAC	3 cut(s)	464, 656, 767
DdeI	CTNAG	3 cut(s)	238, 684, 795
DpnI	GATC	4 cut(s)	38, 162, 189, 582
DpnII	GATC	4 cut(s)	36, 160, 187, 580
Eam1104I	CTCTTC	1 cut(s)	340
EarI	CTCTTC	1 cut(s)	340
Eco24I	GRGCYC	1 cut(s)	731
Eco32I	GATATC	1 cut(s)	610
Eco47I	GGWCC	1 cut(s)	509
Eco57I	CTGAAG	4 cut(s)	278, 321, 333, 462
Eco81I	CCTNAGG	1 cut(s)	684
EcoNI	CCTNNNNNAGG	1 cut(s)	241
EcoRI	GAATTC	1 cut(s)	537
EcoRII	CCWGG	1 cut(s)	373
EcoRV	GATATC	1 cut(s)	610
EcoT22I	ATGCAT	1 cut(s)	757
EcoT38I	GRGCYC	1 cut(s)	731
FaeI	CATG	2 cut(s)	43, 424
FaiI	YATR	7 cut(s)	41, 119, 252, 422, 710, 765, 806
FalI	AAGNNNNNCTT	4 cut(s)	272, 304, 372, 404
FaqI	GGGAC	2 cut(s)	74, 150
FatI	CATG	2 cut(s)	39, 420
FauI	CCCGC	1 cut(s)	442
FbaI	TGATCA	1 cut(s)	187
Fnu4HI	GCNGC	2 cut(s)	393, 396
FokI	GGATG	2 cut(s)	307, 896
FriOI	GRGCYC	1 cut(s)	731
Fsp4HI	GCNGC	2 cut(s)	393, 396
FspBI	CTAG	4 cut(s)	123, 365, 444, 696
GluI	GCNGC	2 cut(s)	393, 396
GsaI	CCCAGC	1 cut(s)	60
GsuI	CTGGAG	2 cut(s)	597, 734
HaeIII	GGCC	1 cut(s)	561
HapII	CCGG	3 cut(s)	512, 620, 653
Hin1II	CATG	2 cut(s)	43, 424
HincII	GTYRAC	1 cut(s)	743
HindII	GTYRAC	1 cut(s)	743
HinfI	GANTC	4 cut(s)	142, 793, 836, 860
HpaII	CCGG	3 cut(s)	512, 620, 653
HphI	GGTGA	4 cut(s)	140, 329, 389, 496
Hpy166II	GTNNAC	3 cut(s)	743, 828, 835
Hpy188I	TCNGA	4 cut(s)	241, 258, 481, 543
Hpy188III	TCNNGA	5 cut(s)	292, 444, 507, 584, 613
Hpy8I	GTNNAC	3 cut(s)	743, 828, 835
HpyAV	CCTTC	3 cut(s)	308, 377, 584
HpyCH4III	ACNGT	3 cut(s)	178, 269, 832
HpyCH4IV	ACGT	1 cut(s)	492
HpyCH4V	TGCA	9 cut(s)	31, 73, 98, 298, 323, 392, 532, 724, 755
HpyF3I	CTNAG	3 cut(s)	238, 684, 795
HpySE526I	ACGT	1 cut(s)	492
Hsp92II	CATG	2 cut(s)	43, 424
Ksp22I	TGATCA	1 cut(s)	187
Kzo9I	GATC	4 cut(s)	36, 160, 187, 580
LguI	GCTCTTC	1 cut(s)	340
LmnI	GCTCC	2 cut(s)	301, 409
Lsp1109I	GCAGC	2 cut(s)	382, 404
LweI	GCATC	6 cut(s)	18, 85, 285, 310, 742, 874
MaeI	CTAG	4 cut(s)	123, 365, 444, 696
MaeII	ACGT	1 cut(s)	492
MaeIII	GTNAC	3 cut(s)	128, 488, 493
MalI	GATC	4 cut(s)	38, 162, 189, 582
MbiI	CCGCTC	1 cut(s)	449
MboI	GATC	4 cut(s)	36, 160, 187, 580
MhlI	GDGCHC	2 cut(s)	335, 731
MluCI	AATT	4 cut(s)	192, 326, 469, 537
MlyI	GAGTC	3 cut(s)	787, 830, 854
Mph1103I	ATGCAT	1 cut(s)	757
MroXI	GAANNNNTTC	1 cut(s)	18
MseI	TTAA	3 cut(s)	228, 516, 901
MspA1I	CMGCKG	1 cut(s)	395
MspI	CCGG	3 cut(s)	512, 620, 653
MspR9I	CCNGG	1 cut(s)	375
MvaI	CCWGG	1 cut(s)	375
NdeII	GATC	4 cut(s)	36, 160, 187, 580
NlaIII	CATG	2 cut(s)	43, 424
NlaIV	GGNNCC	1 cut(s)	303
NmuCI	GTSAC	3 cut(s)	128, 488, 493
NsiI	ATGCAT	1 cut(s)	757
PciSI	GCTCTTC	1 cut(s)	340
PdmI	GAANNNNTTC	1 cut(s)	18
PfeI	GAWTC	1 cut(s)	142
PflFI	GACNNNGTC	1 cut(s)	499
PinAI	ACCGGT	1 cut(s)	511
PkrI	GCNGC	2 cut(s)	394, 397
PleI	GAGTC	3 cut(s)	787, 830, 854
PpsI	GAGTC	3 cut(s)	787, 830, 854
Psp6I	CCWGG	1 cut(s)	373
PspFI	CCCAGC	1 cut(s)	56
PspGI	CCWGG	1 cut(s)	373
PspN4I	GGNNCC	1 cut(s)	303
PspPI	GGNCC	2 cut(s)	509, 560
PsyI	GACNNNGTC	1 cut(s)	499
PvuII	CAGCTG	1 cut(s)	395
RsaI	GTAC	3 cut(s)	465, 657, 768
RsaNI	GTAC	3 cut(s)	464, 656, 767
SapI	GCTCTTC	1 cut(s)	340
SaqAI	TTAA	3 cut(s)	228, 516, 901
SatI	GCNGC	2 cut(s)	393, 396
Sau3AI	GATC	4 cut(s)	36, 160, 187, 580
Sau96I	GGNCC	2 cut(s)	509, 560
SchI	GAGTC	3 cut(s)	787, 830, 854
ScrFI	CCNGG	1 cut(s)	375
SduI	GDGCHC	2 cut(s)	335, 731
SfaNI	GCATC	6 cut(s)	18, 85, 285, 310, 742, 874
SfcI	CTRYAG	1 cut(s)	564
SinI	GGWCC	1 cut(s)	509
SmlI	CTYRAG	2 cut(s)	44, 641
SmoI	CTYRAG	2 cut(s)	44, 641
Sse9I	AATT	4 cut(s)	192, 326, 469, 537
SsiI	CCGC	4 cut(s)	115, 277, 449, 772
SspMI	CTAG	4 cut(s)	123, 365, 444, 696
StyD4I	CCNGG	1 cut(s)	373
TaaI	ACNGT	3 cut(s)	178, 269, 832
TaiI	ACGT	1 cut(s)	495
TaqI	TCGA	1 cut(s)	163
TasI	AATT	4 cut(s)	192, 326, 469, 537
TatI	WGTACW	1 cut(s)	766
TfiI	GAWTC	1 cut(s)	142
Tru1I	TTAA	3 cut(s)	228, 516, 901
Tru9I	TTAA	3 cut(s)	228, 516, 901
TscAI	CASTG	3 cut(s)	158, 274, 837
TseFI	GTSAC	3 cut(s)	128, 488, 493
TseI	GCWGC	2 cut(s)	392, 395
Tsp45I	GTSAC	3 cut(s)	128, 488, 493
TspDTI	ATGAA	2 cut(s)	134, 222
TspGWI	ACGGA	1 cut(s)	419
TspRI	CASTG	3 cut(s)	158, 274, 837
Tth111I	GACNNNGTC	1 cut(s)	499
VpaK11BI	GGWCC	1 cut(s)	509
XagI	CCTNNNNNAGG	1 cut(s)	241
XapI	RAATTY	2 cut(s)	469, 537
XbaI	TCTAGA	1 cut(s)	443
XmnI	GAANNNNTTC	1 cut(s)	18
XspI	CTAG	4 cut(s)	123, 365, 444, 696
Zsp2I	ATGCAT	1 cut(s)	757

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.