Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005653.1

Orthogroup ID

OG0006241

Physical Location & Seq

Genomic Coordinates Forward (+)

8942 .. 17499

Gene Structure 8558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005653.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

atgaatcactttcagttggaattcaacatgcttatcgtacctccactcgaacaaactcacaccccgctctctctctctctctctgaaactttcatcaccgtcaaaaactcaaaacgccttttacctccactcttcagctttgtgccgttgaaggtcgcaaacggagatattgaagccatgggttcgtcttcaaccgacgcttttccacaaatgcaggaaattatgctggagtttcgagctggtaaaatggcttttgaggggaaaagggttattcccgatactcgtaaaggacttgttcgcatagcaaggggtgaggagggtttggtgcatttccagtggcttgatcggaatcaaaatgtagttgaagatgatcagattgtttttcctgatgaggcagtttttgaaaaggttaatcaaacatcaggaagggtgtacatactgaagttcaacacagatgataggaagtttttcttttggatgcaggagccgaaagctgaagatgacacacagttatgtacctccgttaattactacatcaatcgaccaatagaagagatacttgaagaagaaggccctgatggctcagttcctctaacagctgatgatatgtttgaagatgatatttcatcaagagctggaatcttggtggaaccaaacttgggtgcggaagcaagtagcgatgtaacctcttcatctggcccagtgaagctggaagatcttcaaagaatcttgagtaacatcgatcgtgcagatagtgctggggatccagatggaggcataaatttggaggatatattgacacctgatttgattctgccattgattgagacattgccactgcaacagagtttaggatcttacttgcctgagggtcaatggtctccagaggatatattggagttgctgcagagtccaccattccgccaacaaatggattcattcaattatgtacttcgaacaggacagatagatttgactcagtttggtattgacccaagtaaatataagttcacagtattgtcttttcttgaggcacttgaggattcagtttcaaaaacatccgaggaatcaatgcaagatgacaaggatttaagatctgaatcttgtaatcccatggatgaatcccagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005838 GO:0006508 GO:0006511 GO:0006807 GO:0008047 GO:0008150 GO:0008152 GO:0008541 GO:0009056 GO:0009057 GO:0009893 GO:0009987 GO:0010604 GO:0010950 GO:0010952 GO:0016043 GO:0016504 GO:0019222 GO:0019538 GO:0019941 GO:0022607 GO:0022624 GO:0030162 GO:0030163 GO:0030234 GO:0031323 GO:0031325 GO:0032182 GO:0032268 GO:0032270 GO:0032991 GO:0034622 GO:0043085 GO:0043130 GO:0043170 GO:0043248 GO:0043632 GO:0043933 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0044877 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051336 GO:0051345 GO:0051603 GO:0052547 GO:0052548 GO:0060255 GO:0061133 GO:0061134 GO:0061135 GO:0065003 GO:0065007 GO:0065009 GO:0070628 GO:0071704 GO:0071840 GO:0080090 GO:0098772 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

Proteasom_Rpn13 RPN13_C

Protein Analysis

376

Amino Acids

42.35

Weight (kDa)

4.27

Isoelectric Point (pI)

55.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006241)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26590 AT2G26590 AT2G26590 AT2G26590
fragaria_vesca	FvH4_4g06040 FvH4_4g06040 FvH4_4g06040 FvH4_4g06040 FvH4_4g06040 FvH4_4g06040 FvH4_4g06040
malus_domestica	MD16G1238000.v1.1
prunus_persica	Prupe.1G063800_v2.0.a1 Prupe.1G063800_v2.0.a1 Prupe.1G063800_v2.0.a1 Prupe.1G063800_v2.0.a1
pyrus_communis	pycom16g19920
rosa_chinensis	RchiOBHm_Chr4g0397601
rosa_laevigata	RLG00000009425
rosa_multiflora	Rmu_sc0005653.1_g000003
rosa_roxburghii	Rroxscaffold_5G00342410
rosa_rugosa	Rorug03G0342400
rosa_samantha	Rh4AG079200 Rh4BG077100 Rh4CG084800 Rh4DG072200
rosa_wichuraiana	Rw4G006480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	931
AccBSI	CCGCTC	1 cut(s)	67
AciI	CCGC	3 cut(s)	65, 665, 922
AclWI	GGATC	3 cut(s)	758, 771, 862
AcsI	RAATTY	2 cut(s)	20, 781
AcuI	CTGAAG	3 cut(s)	118, 461, 516
AfaI	GTAC	4 cut(s)	39, 434, 517, 951
AfiI	CCNNNNNNNGG	3 cut(s)	659, 773, 931
AluBI	AGCT	6 cut(s)	138, 239, 494, 599, 635, 709
AluI	AGCT	6 cut(s)	138, 239, 494, 599, 635, 709
Alw26I	GTCTC	2 cut(s)	821, 885
AlwI	GGATC	3 cut(s)	758, 771, 862
AoxI	GGCC	2 cut(s)	571, 697
ApeKI	GCWGC	1 cut(s)	904
ApoI	RAATTY	2 cut(s)	20, 781
ArsI	GACNNNNNNTTYG	2 cut(s)	790, 822
Asp700I	GAANNNNTTC	2 cut(s)	467, 717
AspS9I	GGNCC	2 cut(s)	572, 698
AsuHPI	GGTGA	2 cut(s)	88, 323
AsuII	TTCGAA	1 cut(s)	955
AxyI	CCTNAGG	1 cut(s)	867
BamHI	GGATCC	1 cut(s)	763
BbsI	GAAGAC	1 cut(s)	180
BbvI	GCAGC	1 cut(s)	891
BccI	CCATC	2 cut(s)	572, 764
BceAI	ACGGC	1 cut(s)	130
BclI	TGATCA	1 cut(s)	370
BcoDI	GTCTC	2 cut(s)	821, 885
BfmI	CTRYAG	1 cut(s)	905
BglI	GCCNNNNNGGC	1 cut(s)	579
BglII	AGATCT	2 cut(s)	715, 1094
BisI	GCNGC	1 cut(s)	905
BlsI	GCNGC	1 cut(s)	906
BmgT120I	GGNCC	2 cut(s)	572, 698
BmiI	GGNNCC	3 cut(s)	486, 651, 765
BmrI	ACTGGG	2 cut(s)	695, 1120
BmsI	GCATC	1 cut(s)	468
BmuI	ACTGGG	2 cut(s)	695, 1120
BpiI	GAAGAC	1 cut(s)	180
BpmI	CTGGAG	2 cut(s)	248, 867
Bpu14I	TTCGAA	1 cut(s)	955
BpuEI	CTTGAG	3 cut(s)	751, 1049, 1058
Bsa29I	ATCGAT	1 cut(s)	741
BsaBI	GATNNNNATC	2 cut(s)	348, 1099
BsaI	GGTCTC	1 cut(s)	885
BsaJI	CCNNGG	3 cut(s)	177, 1062, 1113
Bsc4I	CCNNNNNNNGG	3 cut(s)	659, 773, 931
Bse1I	ACTGG	3 cut(s)	334, 701, 1126
Bse21I	CCTNAGG	1 cut(s)	867
Bse3DI	GCAATG	1 cut(s)	830
Bse8I	GATNNNNATC	2 cut(s)	348, 1099
BseCI	ATCGAT	1 cut(s)	741
BseDI	CCNNGG	3 cut(s)	177, 1062, 1113
BseGI	GGATG	3 cut(s)	483, 1058, 1123
BseJI	GATNNNNATC	2 cut(s)	348, 1099
BseLI	CCNNNNNNNGG	3 cut(s)	659, 773, 931
BseMI	GCAATG	1 cut(s)	830
BseMII	CTCAG	3 cut(s)	597, 858, 992
BseNI	ACTGG	3 cut(s)	334, 701, 1126
BseRI	GAGGAG	1 cut(s)	329
BseXI	GCAGC	1 cut(s)	891
BseYI	CCCAGC	1 cut(s)	758
BsgI	GTGCAG	1 cut(s)	768
Bsh1285I	CGRYCG	1 cut(s)	745
BshFI	GGCC	2 cut(s)	573, 699
BshVI	ATCGAT	1 cut(s)	741
BsiEI	CGRYCG	1 cut(s)	745
BslI	CCNNNNNNNGG	3 cut(s)	659, 773, 931
BsmAI	GTCTC	2 cut(s)	821, 885
BsnI	GGCC	2 cut(s)	573, 699
Bso31I	GGTCTC	1 cut(s)	885
Bsp119I	TTCGAA	1 cut(s)	955
Bsp1407I	TGTACA	1 cut(s)	432
Bsp143I	GATC	7 cut(s)	343, 370, 715, 742, 763, 854, 1094
Bsp19I	CCATGG	2 cut(s)	177, 1113
BspACI	CCGC	3 cut(s)	65, 665, 922
BspANI	GGCC	2 cut(s)	573, 699
BspCNI	CTCAG	3 cut(s)	596, 859, 991
BspDI	ATCGAT	1 cut(s)	741
BspLI	GGNNCC	3 cut(s)	486, 651, 765
BspMAI	CTGCAG	1 cut(s)	909
BspPI	GGATC	3 cut(s)	758, 771, 862
BspT104I	TTCGAA	1 cut(s)	955
BspTNI	GGTCTC	1 cut(s)	885
BsrBI	CCGCTC	1 cut(s)	67
BsrDI	GCAATG	1 cut(s)	830
BsrGI	TGTACA	1 cut(s)	432
BsrI	ACTGG	3 cut(s)	334, 701, 1126
BssECI	CCNNGG	3 cut(s)	177, 1062, 1113
BssMI	GATC	7 cut(s)	343, 370, 715, 742, 763, 854, 1094
BssT1I	CCWWGG	2 cut(s)	177, 1113
Bst4CI	ACNGT	3 cut(s)	100, 510, 1015
Bst6I	CTCTTC	3 cut(s)	137, 546, 694
BstAPI	GCANNNNNTGC	1 cut(s)	755
BstAUI	TGTACA	1 cut(s)	432
BstBI	TTCGAA	1 cut(s)	955
BstDEI	CTNAG	3 cut(s)	583, 867, 978
BstDSI	CCRYGG	2 cut(s)	177, 1113
BstF5I	GGATG	3 cut(s)	483, 1058, 1123
BstKTI	GATC	7 cut(s)	346, 373, 718, 745, 766, 857, 1097
BstMAI	GTCTC	2 cut(s)	821, 885
BstMBI	GATC	7 cut(s)	343, 370, 715, 742, 763, 854, 1094
BstMCI	CGRYCG	1 cut(s)	745
BstMWI	GCNNNNNNNGC	2 cut(s)	579, 755
BstNSI	RCATGY	1 cut(s)	31
BstSFI	CTRYAG	1 cut(s)	905
BstV1I	GCAGC	1 cut(s)	891
BstV2I	GAAGAC	1 cut(s)	180
BstX2I	RGATCY	4 cut(s)	715, 763, 854, 1094
BstYI	RGATCY	4 cut(s)	715, 763, 854, 1094
Bsu15I	ATCGAT	1 cut(s)	741
Bsu36I	CCTNAGG	1 cut(s)	867
BsuRI	GGCC	2 cut(s)	573, 699
BsuTUI	ATCGAT	1 cut(s)	741
BtgI	CCRYGG	2 cut(s)	177, 1113
BtgZI	GCGATG	1 cut(s)	693
BtsCI	GGATG	3 cut(s)	483, 1058, 1123
BtsI	GCAGTG	1 cut(s)	836
BtsIMutI	CAGTG	3 cut(s)	341, 708, 836
Cfr13I	GGNCC	2 cut(s)	572, 698
ClaI	ATCGAT	1 cut(s)	741
CseI	GACGC	1 cut(s)	206
Csp6I	GTAC	4 cut(s)	38, 433, 516, 950
CviAII	CATG	3 cut(s)	28, 178, 1114
CviQI	GTAC	4 cut(s)	38, 433, 516, 950
DdeI	CTNAG	3 cut(s)	583, 867, 978
DpnI	GATC	7 cut(s)	345, 372, 717, 744, 765, 856, 1096
DpnII	GATC	7 cut(s)	343, 370, 715, 742, 763, 854, 1094
Eam1104I	CTCTTC	3 cut(s)	137, 546, 694
EarI	CTCTTC	3 cut(s)	137, 546, 694
EciI	GGCGGA	1 cut(s)	911
Eco130I	CCWWGG	2 cut(s)	177, 1113
Eco31I	GGTCTC	1 cut(s)	885
Eco57I	CTGAAG	3 cut(s)	118, 461, 516
Eco81I	CCTNAGG	1 cut(s)	867
EcoO109I	RGGNCCY	1 cut(s)	572
EcoRI	GAATTC	1 cut(s)	20
EcoT14I	CCWWGG	2 cut(s)	177, 1113
ErhI	CCWWGG	2 cut(s)	177, 1113
FaeI	CATG	3 cut(s)	31, 181, 1117
FalI	AAGNNNNNCTT	4 cut(s)	455, 487, 543, 575
FatI	CATG	3 cut(s)	27, 177, 1113
FauI	CCCGC	1 cut(s)	72
FbaI	TGATCA	1 cut(s)	370
Fnu4HI	GCNGC	1 cut(s)	905
FokI	GGATG	2 cut(s)	490, 1045
Fsp4HI	GCNGC	1 cut(s)	905
GluI	GCNGC	1 cut(s)	905
GsaI	CCCAGC	1 cut(s)	762
GsuI	CTGGAG	2 cut(s)	248, 867
HaeIII	GGCC	2 cut(s)	573, 699
HgaI	GACGC	1 cut(s)	206
Hin1II	CATG	3 cut(s)	31, 181, 1117
HphI	GGTGA	2 cut(s)	88, 323
Hpy166II	GTNNAC	3 cut(s)	433, 914, 1011
Hpy188I	TCNGA	5 cut(s)	85, 348, 375, 1063, 1099
Hpy188III	TCNNGA	8 cut(s)	275, 386, 423, 630, 730, 767, 884, 1028
Hpy8I	GTNNAC	3 cut(s)	433, 914, 1011
Hpy99I	CGWCG	1 cut(s)	200
HpyAV	CCTTC	3 cut(s)	145, 420, 563
HpyCH4III	ACNGT	3 cut(s)	100, 510, 1015
HpyCH4V	TGCA	7 cut(s)	214, 328, 481, 749, 841, 907, 1075
HpyF10VI	GCNNNNNNNGC	2 cut(s)	579, 755
HpyF3I	CTNAG	3 cut(s)	583, 867, 978
Hsp92II	CATG	3 cut(s)	31, 181, 1117
Ksp22I	TGATCA	1 cut(s)	370
Kzo9I	GATC	7 cut(s)	343, 370, 715, 742, 763, 854, 1094
LmnI	GCTCC	1 cut(s)	484
Lsp1109I	GCAGC	1 cut(s)	891
LweI	GCATC	1 cut(s)	468
MaeIII	GTNAC	2 cut(s)	682, 734
MalI	GATC	7 cut(s)	345, 372, 717, 744, 765, 856, 1096
MbiI	CCGCTC	1 cut(s)	67
MboI	GATC	7 cut(s)	343, 370, 715, 742, 763, 854, 1094
MflI	RGATCY	4 cut(s)	715, 763, 854, 1094
MluCI	AATT	5 cut(s)	20, 219, 526, 781, 943
MlyI	GAGTC	2 cut(s)	919, 970
MroXI	GAANNNNTTC	2 cut(s)	467, 717
MseI	TTAA	3 cut(s)	411, 525, 1091
MslI	CAYNNNNRTG	1 cut(s)	511
MspA1I	CMGCKG	1 cut(s)	599
MwoI	GCNNNNNNNGC	2 cut(s)	579, 755
NcoI	CCATGG	2 cut(s)	177, 1113
NdeII	GATC	7 cut(s)	343, 370, 715, 742, 763, 854, 1094
NlaIII	CATG	3 cut(s)	31, 181, 1117
NlaIV	GGNNCC	3 cut(s)	486, 651, 765
NspI	RCATGY	1 cut(s)	31
NspV	TTCGAA	1 cut(s)	955
PdmI	GAANNNNTTC	2 cut(s)	467, 717
PflMI	CCANNNNNTGG	1 cut(s)	931
PkrI	GCNGC	1 cut(s)	906
Ple19I	CGATCG	1 cut(s)	745
PleI	GAGTC	2 cut(s)	918, 970
PpsI	GAGTC	2 cut(s)	918, 970
PspFI	CCCAGC	1 cut(s)	758
PspN4I	GGNNCC	3 cut(s)	486, 651, 765
PspPI	GGNCC	2 cut(s)	572, 698
PstI	CTGCAG	1 cut(s)	909
PsuI	RGATCY	4 cut(s)	715, 763, 854, 1094
PvuI	CGATCG	1 cut(s)	745
PvuII	CAGCTG	1 cut(s)	599
RsaI	GTAC	4 cut(s)	39, 434, 517, 951
RsaNI	GTAC	4 cut(s)	38, 433, 516, 950
RseI	CAYNNNNRTG	1 cut(s)	511
SaqAI	TTAA	3 cut(s)	411, 525, 1091
SatI	GCNGC	1 cut(s)	905
Sau3AI	GATC	7 cut(s)	343, 370, 715, 742, 763, 854, 1094
Sau96I	GGNCC	2 cut(s)	572, 698
SchI	GAGTC	2 cut(s)	919, 970
SfaNI	GCATC	1 cut(s)	468
SfcI	CTRYAG	1 cut(s)	905
SfuI	TTCGAA	1 cut(s)	955
SmiMI	CAYNNNNRTG	1 cut(s)	511
SmlI	CTYRAG	3 cut(s)	730, 1028, 1037
SmoI	CTYRAG	3 cut(s)	730, 1028, 1037
Sse9I	AATT	5 cut(s)	20, 219, 526, 781, 943
SsiI	CCGC	3 cut(s)	65, 665, 922
StyI	CCWWGG	2 cut(s)	177, 1113
TaaI	ACNGT	3 cut(s)	100, 510, 1015
TaqI	TCGA	5 cut(s)	48, 235, 541, 741, 955
TasI	AATT	5 cut(s)	20, 219, 526, 781, 943
TatI	WGTACW	2 cut(s)	432, 949
Tru1I	TTAA	3 cut(s)	411, 525, 1091
Tru9I	TTAA	3 cut(s)	411, 525, 1091
TscAI	CASTG	3 cut(s)	341, 708, 843
TseI	GCWGC	1 cut(s)	904
TspDTI	ATGAA	5 cut(s)	17, 82, 615, 681, 927
TspGWI	ACGGA	2 cut(s)	177, 511
TspRI	CASTG	3 cut(s)	341, 708, 843
Van91I	CCANNNNNTGG	1 cut(s)	931
XapI	RAATTY	2 cut(s)	20, 781
XceI	RCATGY	1 cut(s)	31
XmnI	GAANNNNTTC	2 cut(s)	467, 717

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.