Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0006241

Physical Location & Seq

Genomic Coordinates Reverse (-)

17361448 .. 17366781

Gene Structure 5334 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g19920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGGGTCATCTTCAACCGCGGCTGTCCCACAAATGCAGGAAATTATGCTGGAGTTTCGCGCTGGTAAGATGGTTTTTGAGGGGAAAAAGGTTGCTCCTGATACTCGTAAAGGACTTGTTCGCATAGCAAGGGGTGATGAGGGGTTGGTGCATTTTCAGTGGCTTGATCGTAGTCTAAATGTTGTGGAAGATGATCAGATTATATTTCCTGACGAGGCAGTTTTCGAAAAGGTTAATCAAGTGTCAGGAAGGGTCTACATATTGAAGTTCACCACCGATGACAGGAAGTTTTTCTTTTGGATGCAGGAGCCTAAAGCTGAAGGTGACTCACAGTTGTGTAGCTCTGTTAATTACTACCTCAATCGACCATTAGCAGAGTTCCTTGACGAAGAAGGGCCTGATGGTTCTATTCCCTTACAAGTTTCTGAAGATATGGTTGATGATGATATTTCATCAAGAGCTGGAATCTTGCTGGAACCAAACCTGGGTGGGGAAGTAAGTAGCGATGTAACTTCTTCAGCTGGCCCAGTGAAATTGGAAGATCTTCAAAGAATCTTAAGTAATATTGAGCCAGCCGATAGGGCTGTGAATACAGATGAAGGCCTGAGTTTGGAGGATATATTGAAACCTGAGTTGATTATGCCATTGATTGAGACATTGCCACTGGAACAGGGTTTAGGTTCTTACTTACCTGAGGGTCAATGGTCTCCTGAGGATGTATTGGAGTTGCTGCAGAGTCCACCTTTCCGCCAACAAATGGATTCCTTTGCTTATGTACTTCGGACAGGACAGATAGATTTGACGCAGTTTGGTATTGACCCAAGTAAATACAAGTTCACTGTATTGTCCTTTCTTGAGGCGCTTGATGATTCGGTTTCAAAGATGTCAGAGTCTGAGGAGTCGAGGCAGGACAGGAAGGATTTAAGATCTGAATCTTGTAACCGTAATGACCCCATGGATGAATCCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005838 GO:0006508 GO:0006511 GO:0006807 GO:0008047 GO:0008150 GO:0008152 GO:0008541 GO:0009056 GO:0009057 GO:0009893 GO:0009987 GO:0010604 GO:0010950 GO:0010952 GO:0016043 GO:0016504 GO:0019222 GO:0019538 GO:0019941 GO:0022607 GO:0022624 GO:0030162 GO:0030163 GO:0030234 GO:0031323 GO:0031325 GO:0032182 GO:0032268 GO:0032270 GO:0032991 GO:0034622 GO:0043085 GO:0043130 GO:0043170 GO:0043248 GO:0043632 GO:0043933 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0044877 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051336 GO:0051345 GO:0051603 GO:0052547 GO:0052548 GO:0060255 GO:0061133 GO:0061134 GO:0061135 GO:0065003 GO:0065007 GO:0065009 GO:0070628 GO:0071704 GO:0071840 GO:0080090 GO:0098772 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

Proteasom_Rpn13 RPN13_C

Protein Analysis

324

Amino Acids

36.27

Weight (kDa)

4.33

Isoelectric Point (pI)

58.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rpn13_ADRM1_Pru	PF04683	17 - 113	1.2e-31	Proteasome complex subunit Rpn13, Pru domain
RPN13_C	PF16550	183 - 288	2.7e-25	UCH-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006241)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26590 AT2G26590 AT2G26590 AT2G26590
fragaria_vesca	FvH4_4g06040 FvH4_4g06040 FvH4_4g06040 FvH4_4g06040 FvH4_4g06040 FvH4_4g06040 FvH4_4g06040
malus_domestica	MD16G1238000.v1.1
prunus_persica	Prupe.1G063800_v2.0.a1 Prupe.1G063800_v2.0.a1 Prupe.1G063800_v2.0.a1 Prupe.1G063800_v2.0.a1
pyrus_communis	pycom16g19920
rosa_chinensis	RchiOBHm_Chr4g0397601
rosa_laevigata	RLG00000009425
rosa_multiflora	Rmu_sc0005653.1_g000003
rosa_roxburghii	Rroxscaffold_5G00342410
rosa_rugosa	Rorug03G0342400
rosa_samantha	Rh4AG079200 Rh4BG077100 Rh4CG084800 Rh4DG072200
rosa_wichuraiana	Rw4G006480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	757
AccI	GTMKAC	1 cut(s)	255
AccII	CGCG	2 cut(s)	20, 60
AciI	CCGC	3 cut(s)	18, 20, 748
AcuI	CTGAAG	3 cut(s)	339, 447, 501
AfaI	GTAC	1 cut(s)	777
AfiI	CCNNNNNNNGG	5 cut(s)	282, 485, 490, 610, 757
AflII	CTTAAG	1 cut(s)	556
AgsI	TTSAA	5 cut(s)	15, 265, 548, 625, 879
AjnI	CCWGG	1 cut(s)	483
AleI	CACNNNNGTG	1 cut(s)	334
AluBI	AGCT	4 cut(s)	317, 342, 461, 521
AluI	AGCT	4 cut(s)	317, 342, 461, 521
Alw26I	GTCTC	2 cut(s)	647, 711
AlwNI	CAGNNNCTG	1 cut(s)	893
AoxI	GGCC	3 cut(s)	395, 523, 601
ApeKI	GCWGC	1 cut(s)	730
Asp700I	GAANNNNTTC	2 cut(s)	290, 543
AspLEI	GCGC	2 cut(s)	62, 862
AspS9I	GGNCC	2 cut(s)	395, 524
AsuHPI	GGTGA	3 cut(s)	146, 262, 335
AsuII	TTCGAA	1 cut(s)	225
AxyI	CCTNAGG	2 cut(s)	693, 711
BbvI	GCAGC	1 cut(s)	717
BccI	CCATC	2 cut(s)	64, 395
BciT130I	CCWGG	1 cut(s)	485
BclI	TGATCA	1 cut(s)	193
BcoDI	GTCTC	2 cut(s)	647, 711
BfmI	CTRYAG	1 cut(s)	731
BfoI	RGCGCY	1 cut(s)	863
BfrI	CTTAAG	1 cut(s)	556
BglI	GCCNNNNNGGC	1 cut(s)	581
BglII	AGATCT	2 cut(s)	541, 926
BisI	GCNGC	2 cut(s)	21, 731
BlsI	GCNGC	2 cut(s)	22, 732
Bme1390I	CCNGG	1 cut(s)	485
BmgT120I	GGNCC	2 cut(s)	395, 524
BmiI	GGNNCC	2 cut(s)	309, 477
BmrFI	CCNGG	1 cut(s)	485
BmrI	ACTGGG	1 cut(s)	521
BmsI	GCATC	1 cut(s)	291
BmuI	ACTGGG	1 cut(s)	521
BpmI	CTGGAG	1 cut(s)	71
Bpu14I	TTCGAA	1 cut(s)	225
BpuEI	CTTGAG	1 cut(s)	875
BsaBI	GATNNNNATC	1 cut(s)	931
BsaI	GGTCTC	1 cut(s)	711
BsaJI	CCNNGG	3 cut(s)	18, 484, 954
Bsc4I	CCNNNNNNNGG	5 cut(s)	282, 485, 490, 610, 757
Bse1I	ACTGG	2 cut(s)	527, 669
Bse21I	CCTNAGG	2 cut(s)	693, 711
Bse3DI	GCAATG	1 cut(s)	656
Bse8I	GATNNNNATC	1 cut(s)	931
BseBI	CCWGG	1 cut(s)	485
BseDI	CCNNGG	3 cut(s)	18, 484, 954
BseGI	GGATG	3 cut(s)	306, 721, 964
BseJI	GATNNNNATC	1 cut(s)	931
BseLI	CCNNNNNNNGG	5 cut(s)	282, 485, 490, 610, 757
BseMI	GCAATG	1 cut(s)	656
BseMII	CTCAG	5 cut(s)	596, 621, 684, 702, 885
BseNI	ACTGG	2 cut(s)	527, 669
BseRI	GAGGAG	1 cut(s)	911
BseXI	GCAGC	1 cut(s)	717
Bsh1236I	CGCG	2 cut(s)	20, 60
BshFI	GGCC	3 cut(s)	397, 525, 603
BslFI	GGGAC	1 cut(s)	11
BslI	CCNNNNNNNGG	5 cut(s)	282, 485, 490, 610, 757
BsmAI	GTCTC	2 cut(s)	647, 711
BsmFI	GGGAC	1 cut(s)	11
BsnI	GGCC	3 cut(s)	397, 525, 603
Bso31I	GGTCTC	1 cut(s)	711
Bsp119I	TTCGAA	1 cut(s)	225
Bsp143I	GATC	4 cut(s)	166, 193, 541, 926
Bsp19I	CCATGG	1 cut(s)	954
BspACI	CCGC	3 cut(s)	18, 20, 748
BspANI	GGCC	3 cut(s)	397, 525, 603
BspCNI	CTCAG	5 cut(s)	597, 622, 685, 703, 886
BspFNI	CGCG	2 cut(s)	20, 60
BspLI	GGNNCC	2 cut(s)	309, 477
BspMAI	CTGCAG	1 cut(s)	735
BspT104I	TTCGAA	1 cut(s)	225
BspTI	CTTAAG	1 cut(s)	556
BspTNI	GGTCTC	1 cut(s)	711
BsrDI	GCAATG	1 cut(s)	656
BsrI	ACTGG	2 cut(s)	527, 669
BssECI	CCNNGG	3 cut(s)	18, 484, 954
BssMI	GATC	4 cut(s)	166, 193, 541, 926
BssT1I	CCWWGG	1 cut(s)	954
Bst2UI	CCWGG	1 cut(s)	485
Bst4CI	ACNGT	3 cut(s)	333, 841, 944
BstAFI	CTTAAG	1 cut(s)	556
BstBI	TTCGAA	1 cut(s)	225
BstC8I	GCNNGC	2 cut(s)	523, 573
BstDEI	CTNAG	5 cut(s)	605, 630, 693, 711, 894
BstDSI	CCRYGG	2 cut(s)	18, 954
BstF5I	GGATG	3 cut(s)	306, 721, 964
BstFNI	CGCG	2 cut(s)	20, 60
BstH2I	RGCGCY	1 cut(s)	863
BstHHI	GCGC	2 cut(s)	62, 862
BstKTI	GATC	4 cut(s)	169, 196, 544, 929
BstMAI	GTCTC	2 cut(s)	647, 711
BstMBI	GATC	4 cut(s)	166, 193, 541, 926
BstMWI	GCNNNNNNNGC	1 cut(s)	581
BstNI	CCWGG	1 cut(s)	485
BstSCI	CCNGG	1 cut(s)	483
BstSFI	CTRYAG	1 cut(s)	731
BstUI	CGCG	2 cut(s)	20, 60
BstV1I	GCAGC	1 cut(s)	717
BstX2I	RGATCY	2 cut(s)	541, 926
BstYI	RGATCY	2 cut(s)	541, 926
Bsu36I	CCTNAGG	2 cut(s)	693, 711
BsuRI	GGCC	3 cut(s)	397, 525, 603
BtgI	CCRYGG	2 cut(s)	18, 954
BtgZI	GCGATG	1 cut(s)	519
BtsCI	GGATG	3 cut(s)	306, 721, 964
BtsIMutI	CAGTG	4 cut(s)	164, 534, 662, 837
Cac8I	GCNNGC	2 cut(s)	523, 573
CaiI	CAGNNNCTG	1 cut(s)	893
CfoI	GCGC	2 cut(s)	62, 862
Cfr13I	GGNCC	2 cut(s)	395, 524
Cfr42I	CCGCGG	1 cut(s)	21
CseI	GACGC	1 cut(s)	811
Csp6I	GTAC	1 cut(s)	776
CviAII	CATG	1 cut(s)	955
CviQI	GTAC	1 cut(s)	776
DdeI	CTNAG	5 cut(s)	605, 630, 693, 711, 894
DpnI	GATC	4 cut(s)	168, 195, 543, 928
DpnII	GATC	4 cut(s)	166, 193, 541, 926
EciI	GGCGGA	1 cut(s)	737
Eco130I	CCWWGG	1 cut(s)	954
Eco147I	AGGCCT	1 cut(s)	603
Eco31I	GGTCTC	1 cut(s)	711
Eco57I	CTGAAG	3 cut(s)	339, 447, 501
Eco81I	CCTNAGG	2 cut(s)	693, 711
EcoO109I	RGGNCCY	1 cut(s)	395
EcoRII	CCWGG	1 cut(s)	483
EcoT14I	CCWWGG	1 cut(s)	954
ErhI	CCWWGG	1 cut(s)	954
FaeI	CATG	1 cut(s)	958
FaiI	YATR	9 cut(s)	47, 125, 203, 260, 434, 620, 641, 774, 956
FalI	AAGNNNNNCTT	2 cut(s)	278, 310
FaqI	GGGAC	1 cut(s)	11
FatI	CATG	1 cut(s)	954
FbaI	TGATCA	1 cut(s)	193
FblI	GTMKAC	1 cut(s)	255
Fnu4HI	GCNGC	2 cut(s)	21, 731
FokI	GGATG	2 cut(s)	313, 728
Fsp4HI	GCNGC	2 cut(s)	21, 731
GlaI	GCGC	2 cut(s)	61, 861
GluI	GCNGC	2 cut(s)	21, 731
GsuI	CTGGAG	1 cut(s)	71
HaeII	RGCGCY	1 cut(s)	863
HaeIII	GGCC	3 cut(s)	397, 525, 603
HgaI	GACGC	1 cut(s)	811
HhaI	GCGC	2 cut(s)	62, 862
Hin1II	CATG	1 cut(s)	958
Hin6I	GCGC	2 cut(s)	60, 860
HinP1I	GCGC	2 cut(s)	60, 860
HphI	GGTGA	3 cut(s)	146, 262, 335
Hpy166II	GTNNAC	4 cut(s)	256, 270, 740, 837
Hpy188I	TCNGA	6 cut(s)	198, 427, 783, 889, 895, 931
Hpy188III	TCNNGA	6 cut(s)	98, 209, 246, 456, 710, 854
Hpy8I	GTNNAC	4 cut(s)	256, 270, 740, 837
HpyAV	CCTTC	5 cut(s)	243, 314, 386, 593, 910
HpyCH4III	ACNGT	3 cut(s)	333, 841, 944
HpyCH4V	TGCA	4 cut(s)	37, 151, 304, 733
HpyF10VI	GCNNNNNNNGC	1 cut(s)	581
HpyF3I	CTNAG	5 cut(s)	605, 630, 693, 711, 894
Hsp92II	CATG	1 cut(s)	958
HspAI	GCGC	2 cut(s)	60, 860
Ksp22I	TGATCA	1 cut(s)	193
KspI	CCGCGG	1 cut(s)	21
Kzo9I	GATC	4 cut(s)	166, 193, 541, 926
LmnI	GCTCC	2 cut(s)	100, 307
Lsp1109I	GCAGC	1 cut(s)	717
LweI	GCATC	1 cut(s)	291
MaeIII	GTNAC	3 cut(s)	323, 508, 938
MalI	GATC	4 cut(s)	168, 195, 543, 928
MboI	GATC	4 cut(s)	166, 193, 541, 926
MboII	GAAGA	7 cut(s)	3, 200, 401, 440, 507, 536, 551
MflI	RGATCY	2 cut(s)	541, 926
MluCI	AATT	3 cut(s)	42, 349, 533
MlyI	GAGTC	4 cut(s)	320, 745, 899, 908
MroXI	GAANNNNTTC	2 cut(s)	290, 543
MseI	TTAA	4 cut(s)	234, 348, 557, 923
MslI	CAYNNNNRTG	1 cut(s)	334
MspA1I	CMGCKG	2 cut(s)	20, 521
MspCI	CTTAAG	1 cut(s)	556
MspR9I	CCNGG	1 cut(s)	485
MvaI	CCWGG	1 cut(s)	485
MvnI	CGCG	2 cut(s)	20, 60
MwoI	GCNNNNNNNGC	1 cut(s)	581
NcoI	CCATGG	1 cut(s)	954
NdeII	GATC	4 cut(s)	166, 193, 541, 926
NlaIII	CATG	1 cut(s)	958
NlaIV	GGNNCC	2 cut(s)	309, 477
NmuCI	GTSAC	1 cut(s)	323
NspV	TTCGAA	1 cut(s)	225
OliI	CACNNNNGTG	1 cut(s)	334
PceI	AGGCCT	1 cut(s)	603
PdmI	GAANNNNTTC	2 cut(s)	290, 543
PfeI	GAWTC	6 cut(s)	465, 552, 761, 869, 932, 962
PflMI	CCANNNNNTGG	1 cut(s)	757
PkrI	GCNGC	2 cut(s)	22, 732
PleI	GAGTC	4 cut(s)	320, 744, 898, 907
PpsI	GAGTC	4 cut(s)	320, 744, 898, 907
Psp6I	CCWGG	1 cut(s)	483
PspGI	CCWGG	1 cut(s)	483
PspN4I	GGNNCC	2 cut(s)	309, 477
PspPI	GGNCC	2 cut(s)	395, 524
PstI	CTGCAG	1 cut(s)	735
PstNI	CAGNNNCTG	1 cut(s)	893
PsuI	RGATCY	2 cut(s)	541, 926
PvuII	CAGCTG	1 cut(s)	521
RsaI	GTAC	1 cut(s)	777
RsaNI	GTAC	1 cut(s)	776
RseI	CAYNNNNRTG	1 cut(s)	334
SacII	CCGCGG	1 cut(s)	21
SaqAI	TTAA	4 cut(s)	234, 348, 557, 923
SatI	GCNGC	2 cut(s)	21, 731
Sau3AI	GATC	4 cut(s)	166, 193, 541, 926
Sau96I	GGNCC	2 cut(s)	395, 524
SchI	GAGTC	4 cut(s)	320, 745, 899, 908
ScrFI	CCNGG	1 cut(s)	485
SfaNI	GCATC	1 cut(s)	291
SfcI	CTRYAG	1 cut(s)	731
Sfr303I	CCGCGG	1 cut(s)	21
SfuI	TTCGAA	1 cut(s)	225
SgrBI	CCGCGG	1 cut(s)	21
SmiMI	CAYNNNNRTG	1 cut(s)	334
SmlI	CTYRAG	2 cut(s)	556, 854
SmoI	CTYRAG	2 cut(s)	556, 854
Sse9I	AATT	3 cut(s)	42, 349, 533
SseBI	AGGCCT	1 cut(s)	603
SsiI	CCGC	3 cut(s)	18, 20, 748
SspI	AATATT	1 cut(s)	565
StuI	AGGCCT	1 cut(s)	603
StyD4I	CCNGG	1 cut(s)	483
StyI	CCWWGG	1 cut(s)	954
TaaI	ACNGT	3 cut(s)	333, 841, 944
TaqI	TCGA	3 cut(s)	225, 364, 902
TasI	AATT	3 cut(s)	42, 349, 533
TatI	WGTACW	1 cut(s)	775
TauI	GCSGC	1 cut(s)	23
TfiI	GAWTC	6 cut(s)	465, 552, 761, 869, 932, 962
Tru1I	TTAA	4 cut(s)	234, 348, 557, 923
Tru9I	TTAA	4 cut(s)	234, 348, 557, 923
TscAI	CASTG	4 cut(s)	164, 534, 669, 844
TseFI	GTSAC	1 cut(s)	323
TseI	GCWGC	1 cut(s)	730
Tsp45I	GTSAC	1 cut(s)	323
TspDTI	ATGAA	2 cut(s)	441, 612
TspRI	CASTG	4 cut(s)	164, 534, 669, 844
Van91I	CCANNNNNTGG	1 cut(s)	757
Vha464I	CTTAAG	1 cut(s)	556
XmiI	GTMKAC	1 cut(s)	255
XmnI	GAANNNNTTC	2 cut(s)	290, 543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.