Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0006241

Physical Location & Seq

Genomic Coordinates Reverse (-)

4548221 .. 4555416

Gene Structure 7196 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G063800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGGTTCGTCTTCAAACGCAGCTATACCACAAATGCAGGAAATTATGCTGGAGTTTCGTGCTGGTAAAATGGTTTTTGAGGGGAAAAAGGTTGCTCCTGATACCCGTAAAGGACTTGTTCGCATTGCGAAGGGTGATGAGGGGTTGGTGCATTTTCAGTGGCTTGATCGGAGCCAAAATGTTGTTGAAGATGATCAGATCATCTTTCCCGATGAGGCAGTTTTTGAAAAGGTTAATCAAGCATCAGGAAGGGTTTACTTATTGAAGTTCAACACTGATGATAGGAAGTTCTTCTTCTGGATGCAGGAGCCTAAAGCTGAAAATGACTCACACTTGTGTAGCTCAGTCAATTACTACCTCAATCGACCATTAGAGTTCCTTGATGAAGAAGGGCCTGATGCTTCTGTTCCTCTACAAGTTTCTGAAGATGTGGTTGAAGATGATATTTCATCAAGAGCTGGAATATTGGTGGAACCAAACTTCGGTGCAGAAGTAAGTAGCGATGTGACTTCTTCATCTGGCCCAGTGAAATTGGAAGATCTTCAAAGAATCTTAAGCAATATTGACCCAGCAGATACTGCTTTGGATCCAGATGAGGGCTTGAGTTTGGGGGACATATTGAAACCTGATTTGATTATGCCATTGATTGAGACATTGCAACTAGAGCAGCGTTTAGAGTCTTACTTACCTGAGGGTCAATGGTCTCCAGAGGATATTTTGGAGTTGCTGCAGAGTCCACCATTCCGCCAACAAATGGATTCATTTGCTTATGTACTTCGAACAGGACAGATAGATTTGTCTCAGTTTGGTGTTGACCCAAGTAAATACAAATTCACTGTATTGTCTTTTCTTGAGGCACTTGAGGATTCGGTTTCGAAGGCTTCAGAGTCTGATGAGTCGAGGCAAGACAACAAGGATTTAAGATCTGAATCTTGTAATCGTAACGATCCCATGGATGAGTCCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005838 GO:0006508 GO:0006511 GO:0006807 GO:0008047 GO:0008150 GO:0008152 GO:0008541 GO:0009056 GO:0009057 GO:0009893 GO:0009987 GO:0010604 GO:0010950 GO:0010952 GO:0016043 GO:0016504 GO:0019222 GO:0019538 GO:0019941 GO:0022607 GO:0022624 GO:0030162 GO:0030163 GO:0030234 GO:0031323 GO:0031325 GO:0032182 GO:0032268 GO:0032270 GO:0032991 GO:0034622 GO:0043085 GO:0043130 GO:0043170 GO:0043248 GO:0043632 GO:0043933 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0044877 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051336 GO:0051345 GO:0051603 GO:0052547 GO:0052548 GO:0060255 GO:0061133 GO:0061134 GO:0061135 GO:0065003 GO:0065007 GO:0065009 GO:0070628 GO:0071704 GO:0071840 GO:0080090 GO:0098772 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

Proteasom_Rpn13 RPN13_C

Protein Analysis

323

Amino Acids

36.24

Weight (kDa)

4.31

Isoelectric Point (pI)

54.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006241)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26590 AT2G26590 AT2G26590 AT2G26590
fragaria_vesca	FvH4_4g06040 FvH4_4g06040 FvH4_4g06040 FvH4_4g06040 FvH4_4g06040 FvH4_4g06040 FvH4_4g06040
malus_domestica	MD16G1238000.v1.1
prunus_persica	Prupe.1G063800_v2.0.a1 Prupe.1G063800_v2.0.a1 Prupe.1G063800_v2.0.a1 Prupe.1G063800_v2.0.a1
pyrus_communis	pycom16g19920
rosa_chinensis	RchiOBHm_Chr4g0397601
rosa_laevigata	RLG00000009425
rosa_multiflora	Rmu_sc0005653.1_g000003
rosa_roxburghii	Rroxscaffold_5G00342410
rosa_rugosa	Rorug03G0342400
rosa_samantha	Rh4AG079200 Rh4BG077100 Rh4CG084800 Rh4DG072200
rosa_wichuraiana	Rw4G006480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	754
AciI	CCGC	1 cut(s)	745
AclWI	GGATC	3 cut(s)	581, 594, 941
AcsI	RAATTY	1 cut(s)	830
AcuI	CTGAAG	2 cut(s)	444, 867
AfaI	GTAC	1 cut(s)	774
AfiI	CCNNNNNNNGG	3 cut(s)	482, 596, 754
AflII	CTTAAG	1 cut(s)	553
AgsI	TTSAA	8 cut(s)	15, 188, 227, 265, 271, 437, 545, 622
AleI	CACNNNNGTG	1 cut(s)	334
AluBI	AGCT	4 cut(s)	23, 317, 342, 458
AluI	AGCT	4 cut(s)	23, 317, 342, 458
Alw26I	GTCTC	3 cut(s)	644, 708, 804
AlwI	GGATC	3 cut(s)	581, 594, 941
AlwNI	CAGNNNCTG	2 cut(s)	578, 890
AoxI	GGCC	2 cut(s)	392, 520
ApeKI	GCWGC	3 cut(s)	20, 667, 727
ApoI	RAATTY	1 cut(s)	830
Asp700I	GAANNNNTTC	2 cut(s)	290, 540
AspS9I	GGNCC	2 cut(s)	392, 521
AsuHPI	GGTGA	1 cut(s)	146
AsuII	TTCGAA	2 cut(s)	778, 875
AxyI	CCTNAGG	1 cut(s)	690
BamHI	GGATCC	1 cut(s)	586
BbsI	GAAGAC	1 cut(s)	3
BbvI	GCAGC	3 cut(s)	32, 679, 714
BclI	TGATCA	1 cut(s)	193
BcoDI	GTCTC	3 cut(s)	644, 708, 804
BfaI	CTAG	1 cut(s)	662
BfmI	CTRYAG	1 cut(s)	728
BfrI	CTTAAG	1 cut(s)	553
BglII	AGATCT	2 cut(s)	538, 923
BisI	GCNGC	3 cut(s)	21, 668, 728
BlsI	GCNGC	3 cut(s)	22, 669, 729
BmgT120I	GGNCC	2 cut(s)	392, 521
BmiI	GGNNCC	4 cut(s)	173, 309, 474, 588
BmrI	ACTGGG	1 cut(s)	518
BmsI	GCATC	3 cut(s)	251, 291, 388
BmuI	ACTGGG	1 cut(s)	518
BpiI	GAAGAC	1 cut(s)	3
BpmI	CTGGAG	2 cut(s)	71, 690
Bpu14I	TTCGAA	2 cut(s)	778, 875
BpuEI	CTTGAG	3 cut(s)	622, 872, 881
BsaBI	GATNNNNATC	1 cut(s)	928
BsaI	GGTCTC	1 cut(s)	708
BsaJI	CCNNGG	1 cut(s)	951
Bsc4I	CCNNNNNNNGG	3 cut(s)	482, 596, 754
Bse1I	ACTGG	1 cut(s)	524
Bse21I	CCTNAGG	1 cut(s)	690
Bse3DI	GCAATG	2 cut(s)	123, 653
Bse8I	GATNNNNATC	1 cut(s)	928
BseDI	CCNNGG	1 cut(s)	951
BseGI	GGATG	2 cut(s)	306, 961
BseJI	GATNNNNATC	1 cut(s)	928
BseLI	CCNNNNNNNGG	3 cut(s)	482, 596, 754
BseMI	GCAATG	2 cut(s)	123, 653
BseMII	CTCAG	3 cut(s)	357, 681, 815
BseNI	ACTGG	1 cut(s)	524
BseXI	GCAGC	3 cut(s)	32, 679, 714
BseYI	CCCAGC	1 cut(s)	568
BsgI	GTGCAG	1 cut(s)	507
BshFI	GGCC	2 cut(s)	394, 522
BslFI	GGGAC	1 cut(s)	626
BslI	CCNNNNNNNGG	3 cut(s)	482, 596, 754
BsmAI	GTCTC	3 cut(s)	644, 708, 804
BsmFI	GGGAC	1 cut(s)	626
BsnI	GGCC	2 cut(s)	394, 522
Bso31I	GGTCTC	1 cut(s)	708
Bsp119I	TTCGAA	2 cut(s)	778, 875
Bsp143I	GATC	7 cut(s)	166, 193, 198, 538, 586, 923, 946
Bsp19I	CCATGG	1 cut(s)	951
BspACI	CCGC	1 cut(s)	745
BspANI	GGCC	2 cut(s)	394, 522
BspCNI	CTCAG	3 cut(s)	356, 682, 814
BspLI	GGNNCC	4 cut(s)	173, 309, 474, 588
BspMAI	CTGCAG	1 cut(s)	732
BspPI	GGATC	3 cut(s)	581, 594, 941
BspT104I	TTCGAA	2 cut(s)	778, 875
BspTI	CTTAAG	1 cut(s)	553
BspTNI	GGTCTC	1 cut(s)	708
BsrDI	GCAATG	2 cut(s)	123, 653
BsrI	ACTGG	1 cut(s)	524
BssECI	CCNNGG	1 cut(s)	951
BssMI	GATC	7 cut(s)	166, 193, 198, 538, 586, 923, 946
BssT1I	CCWWGG	1 cut(s)	951
Bst4CI	ACNGT	1 cut(s)	838
BstAFI	CTTAAG	1 cut(s)	553
BstAPI	GCANNNNNTGC	1 cut(s)	578
BstBI	TTCGAA	2 cut(s)	778, 875
BstDEI	CTNAG	3 cut(s)	343, 690, 801
BstDSI	CCRYGG	1 cut(s)	951
BstF5I	GGATG	2 cut(s)	306, 961
BstKTI	GATC	7 cut(s)	169, 196, 201, 541, 589, 926, 949
BstMAI	GTCTC	3 cut(s)	644, 708, 804
BstMBI	GATC	7 cut(s)	166, 193, 198, 538, 586, 923, 946
BstMWI	GCNNNNNNNGC	2 cut(s)	578, 664
BstSFI	CTRYAG	1 cut(s)	728
BstV1I	GCAGC	3 cut(s)	32, 679, 714
BstV2I	GAAGAC	1 cut(s)	3
BstX2I	RGATCY	3 cut(s)	538, 586, 923
BstYI	RGATCY	3 cut(s)	538, 586, 923
Bsu36I	CCTNAGG	1 cut(s)	690
BsuRI	GGCC	2 cut(s)	394, 522
BtgI	CCRYGG	1 cut(s)	951
BtgZI	GCGATG	1 cut(s)	516
BtsCI	GGATG	2 cut(s)	306, 961
BtsIMutI	CAGTG	4 cut(s)	164, 273, 531, 834
CaiI	CAGNNNCTG	2 cut(s)	578, 890
Cfr13I	GGNCC	2 cut(s)	392, 521
Csp6I	GTAC	1 cut(s)	773
CviAII	CATG	1 cut(s)	952
CviQI	GTAC	1 cut(s)	773
DdeI	CTNAG	3 cut(s)	343, 690, 801
DpnI	GATC	7 cut(s)	168, 195, 200, 540, 588, 925, 948
DpnII	GATC	7 cut(s)	166, 193, 198, 538, 586, 923, 946
EciI	GGCGGA	1 cut(s)	734
Eco130I	CCWWGG	1 cut(s)	951
Eco31I	GGTCTC	1 cut(s)	708
Eco57I	CTGAAG	2 cut(s)	444, 867
Eco81I	CCTNAGG	1 cut(s)	690
EcoO109I	RGGNCCY	1 cut(s)	392
EcoT14I	CCWWGG	1 cut(s)	951
ErhI	CCWWGG	1 cut(s)	951
FaeI	CATG	1 cut(s)	955
FaiI	YATR	6 cut(s)	26, 47, 617, 638, 771, 953
FalI	AAGNNNNNCTT	2 cut(s)	278, 310
FaqI	GGGAC	1 cut(s)	626
FatI	CATG	1 cut(s)	951
FbaI	TGATCA	1 cut(s)	193
Fnu4HI	GCNGC	3 cut(s)	21, 668, 728
FokI	GGATG	1 cut(s)	313
Fsp4HI	GCNGC	3 cut(s)	21, 668, 728
FspBI	CTAG	1 cut(s)	662
GluI	GCNGC	3 cut(s)	21, 668, 728
GsaI	CCCAGC	1 cut(s)	572
GsuI	CTGGAG	2 cut(s)	71, 690
HaeIII	GGCC	2 cut(s)	394, 522
Hin1II	CATG	1 cut(s)	955
HincII	GTYRAC	1 cut(s)	814
HindII	GTYRAC	1 cut(s)	814
HphI	GGTGA	1 cut(s)	146
Hpy166II	GTNNAC	3 cut(s)	256, 737, 814
Hpy188I	TCNGA	6 cut(s)	171, 198, 424, 886, 892, 928
Hpy188III	TCNNGA	8 cut(s)	98, 209, 246, 298, 453, 590, 707, 851
Hpy8I	GTNNAC	3 cut(s)	256, 737, 814
HpyAV	CCTTC	4 cut(s)	124, 243, 383, 871
HpyCH4III	ACNGT	1 cut(s)	838
HpyCH4V	TGCA	6 cut(s)	37, 151, 304, 488, 658, 730
HpyF10VI	GCNNNNNNNGC	2 cut(s)	578, 664
HpyF3I	CTNAG	3 cut(s)	343, 690, 801
Hsp92II	CATG	1 cut(s)	955
Ksp22I	TGATCA	1 cut(s)	193
Kzo9I	GATC	7 cut(s)	166, 193, 198, 538, 586, 923, 946
LmnI	GCTCC	3 cut(s)	100, 171, 307
Lsp1109I	GCAGC	3 cut(s)	32, 679, 714
LweI	GCATC	3 cut(s)	251, 291, 388
MaeI	CTAG	1 cut(s)	662
MaeIII	GTNAC	2 cut(s)	505, 941
MalI	GATC	7 cut(s)	168, 195, 200, 540, 588, 925, 948
MboI	GATC	7 cut(s)	166, 193, 198, 538, 586, 923, 946
MflI	RGATCY	3 cut(s)	538, 586, 923
MluCI	AATT	4 cut(s)	42, 349, 530, 830
MlyI	GAGTC	6 cut(s)	320, 686, 742, 896, 905, 968
MroXI	GAANNNNTTC	2 cut(s)	290, 540
MseI	TTAA	3 cut(s)	234, 554, 920
MslI	CAYNNNNRTG	1 cut(s)	334
MspCI	CTTAAG	1 cut(s)	553
MwoI	GCNNNNNNNGC	2 cut(s)	578, 664
NcoI	CCATGG	1 cut(s)	951
NdeII	GATC	7 cut(s)	166, 193, 198, 538, 586, 923, 946
NlaIII	CATG	1 cut(s)	955
NlaIV	GGNNCC	4 cut(s)	173, 309, 474, 588
NmuCI	GTSAC	1 cut(s)	505
NspV	TTCGAA	2 cut(s)	778, 875
OliI	CACNNNNGTG	1 cut(s)	334
PdmI	GAANNNNTTC	2 cut(s)	290, 540
PfeI	GAWTC	4 cut(s)	549, 758, 866, 929
PflMI	CCANNNNNTGG	1 cut(s)	754
PkrI	GCNGC	3 cut(s)	22, 669, 729
PleI	GAGTC	6 cut(s)	320, 685, 741, 895, 904, 967
PpsI	GAGTC	6 cut(s)	320, 685, 741, 895, 904, 967
PspFI	CCCAGC	1 cut(s)	568
PspN4I	GGNNCC	4 cut(s)	173, 309, 474, 588
PspPI	GGNCC	2 cut(s)	392, 521
PstI	CTGCAG	1 cut(s)	732
PstNI	CAGNNNCTG	2 cut(s)	578, 890
PsuI	RGATCY	3 cut(s)	538, 586, 923
RsaI	GTAC	1 cut(s)	774
RsaNI	GTAC	1 cut(s)	773
RseI	CAYNNNNRTG	1 cut(s)	334
SaqAI	TTAA	3 cut(s)	234, 554, 920
SatI	GCNGC	3 cut(s)	21, 668, 728
Sau3AI	GATC	7 cut(s)	166, 193, 198, 538, 586, 923, 946
Sau96I	GGNCC	2 cut(s)	392, 521
SchI	GAGTC	6 cut(s)	320, 686, 742, 896, 905, 968
SetI	ASST	9 cut(s)	25, 93, 234, 319, 344, 360, 460, 628, 691
SfaNI	GCATC	3 cut(s)	251, 291, 388
SfcI	CTRYAG	1 cut(s)	728
SfuI	TTCGAA	2 cut(s)	778, 875
SmiMI	CAYNNNNRTG	1 cut(s)	334
SmlI	CTYRAG	4 cut(s)	553, 601, 851, 860
SmoI	CTYRAG	4 cut(s)	553, 601, 851, 860
Sse9I	AATT	4 cut(s)	42, 349, 530, 830
SsiI	CCGC	1 cut(s)	745
SspI	AATATT	2 cut(s)	465, 562
SspMI	CTAG	1 cut(s)	662
StyI	CCWWGG	1 cut(s)	951
TaaI	ACNGT	1 cut(s)	838
TaqI	TCGA	4 cut(s)	364, 778, 875, 899
TasI	AATT	4 cut(s)	42, 349, 530, 830
TatI	WGTACW	1 cut(s)	772
TfiI	GAWTC	4 cut(s)	549, 758, 866, 929
Tru1I	TTAA	3 cut(s)	234, 554, 920
Tru9I	TTAA	3 cut(s)	234, 554, 920
TscAI	CASTG	4 cut(s)	164, 280, 531, 841
TseFI	GTSAC	1 cut(s)	505
TseI	GCWGC	3 cut(s)	20, 667, 727
Tsp45I	GTSAC	1 cut(s)	505
TspDTI	ATGAA	4 cut(s)	399, 438, 504, 750
TspRI	CASTG	4 cut(s)	164, 280, 531, 841
Van91I	CCANNNNNTGG	1 cut(s)	754
Vha464I	CTTAAG	1 cut(s)	553
XapI	RAATTY	1 cut(s)	830
XmnI	GAANNNNTTC	2 cut(s)	290, 540
XspI	CTAG	1 cut(s)	662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.