Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0006241

Physical Location & Seq

Genomic Coordinates Reverse (-)

25076297 .. 25083041

Gene Structure 6745 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1238000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGGGTCGTCTTCAACCACGGCTGTTCCACAAATGCAGGAAATTATGCTGGAGTTTCGCGCTGGTAAGATGGTTTTTGAGGGGAAAAAGGTTGCTCCTGATACTCGTAGAGGACTTGTTCGCATAGCAAGGGGTGATGAGGGGTTGGTGCATTTTCAGTGGCTTGATCGTAGTCTAAATGTTGTGGAAGATGATCAGATTATATTTCCTGACGAGGCAGTTTTCGAAAAGGTTAATCAAGTGTCAGGAAGGGTCTACATATTGAAGTTCACCACCGATGACAGGAAGTTTTTCTTTTGGATGCAGGAGCCTAAAGCTGAAGGTGACTCACAGTTGTGTAGCTCTGTTAATTACTACCTCAATCGACCATTAGAGTTCCTTGACGAAGAAGGGCCTGATGGTTCTATTCCCTTACAAGTTTCTGAAGATATGGTTGATGATGATATTTCATCAAGAGCTGGAATCTTGCTGGAACCAAACTTGGGTGGGGAAGTAAGTAGCGATGTAACTTCTTCAGCTGGCCCAGTGAAATTGGAAGATCTTCAAAGAATCTTAAGTAACATTGAGCCAGCAGATAGGGCTGTGGATACAGATGAAGGCTTGAGTTTGGAGGATATATTCAAACCCGAGTTGATTATGCCATTGATTGAGACATTGCCACTGGAACAGGGTTTAGGTTCTTACTTACCTGAGGGTCAATGGTCTCCTGACGATGTATTGGAGTTGCTGCAGAGTCCACCTTTCCGCCAACAAATGGATTCATTTGCTTATGTACTTCGAACAGGACAGATAGATTTGACGCAGTTTGGTATTGACCCAAGTAAATACAAGTTCACTGTATTGTCCTTTCTTGAGGCGCTTGATGATTCGGTTTCAAAGACGTCAGAGTCTGAGGAGTCGAGGCAAGACAGGAAGGATTTAAGATCTGAATCTTGTAACCGTAATGACCCCATGGATGAGTCCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005838 GO:0006508 GO:0006511 GO:0006807 GO:0008047 GO:0008150 GO:0008152 GO:0008541 GO:0009056 GO:0009057 GO:0009893 GO:0009987 GO:0010604 GO:0010950 GO:0010952 GO:0016043 GO:0016504 GO:0019222 GO:0019538 GO:0019941 GO:0022607 GO:0022624 GO:0030162 GO:0030163 GO:0030234 GO:0031323 GO:0031325 GO:0032182 GO:0032268 GO:0032270 GO:0032991 GO:0034622 GO:0043085 GO:0043130 GO:0043170 GO:0043248 GO:0043632 GO:0043933 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0044877 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051336 GO:0051345 GO:0051603 GO:0052547 GO:0052548 GO:0060255 GO:0061133 GO:0061134 GO:0061135 GO:0065003 GO:0065007 GO:0065009 GO:0070628 GO:0071704 GO:0071840 GO:0080090 GO:0098772 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

Proteasom_Rpn13 RPN13_C

Protein Analysis

323

Amino Acids

36.25

Weight (kDa)

4.31

Isoelectric Point (pI)

54.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rpn13_ADRM1_Pru	PF04683	17 - 113	3e-31	Proteasome complex subunit Rpn13, Pru domain
RPN13_C	PF16550	182 - 287	7.4e-24	UCH-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006241)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26590 AT2G26590 AT2G26590 AT2G26590
fragaria_vesca	FvH4_4g06040 FvH4_4g06040 FvH4_4g06040 FvH4_4g06040 FvH4_4g06040 FvH4_4g06040 FvH4_4g06040
malus_domestica	MD16G1238000.v1.1
prunus_persica	Prupe.1G063800_v2.0.a1 Prupe.1G063800_v2.0.a1 Prupe.1G063800_v2.0.a1 Prupe.1G063800_v2.0.a1
pyrus_communis	pycom16g19920
rosa_chinensis	RchiOBHm_Chr4g0397601
rosa_laevigata	RLG00000009425
rosa_multiflora	Rmu_sc0005653.1_g000003
rosa_roxburghii	Rroxscaffold_5G00342410
rosa_rugosa	Rorug03G0342400
rosa_samantha	Rh4AG079200 Rh4BG077100 Rh4CG084800 Rh4DG072200
rosa_wichuraiana	Rw4G006480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	886
AatII	GACGTC	1 cut(s)	884
AccB7I	CCANNNNNTGG	1 cut(s)	754
AccI	GTMKAC	1 cut(s)	255
AccII	CGCG	1 cut(s)	60
AciI	CCGC	1 cut(s)	745
AcuI	CTGAAG	3 cut(s)	339, 444, 498
AcyI	GRCGYC	1 cut(s)	881
AfaI	GTAC	1 cut(s)	774
AfiI	CCNNNNNNNGG	3 cut(s)	282, 482, 754
AflII	CTTAAG	1 cut(s)	553
AgsI	TTSAA	5 cut(s)	15, 265, 545, 622, 876
AleI	CACNNNNGTG	1 cut(s)	334
AluBI	AGCT	4 cut(s)	317, 342, 458, 518
AluI	AGCT	4 cut(s)	317, 342, 458, 518
Alw26I	GTCTC	2 cut(s)	644, 708
AlwNI	CAGNNNCTG	1 cut(s)	890
Ama87I	CYCGRG	1 cut(s)	626
AoxI	GGCC	2 cut(s)	392, 520
ApeKI	GCWGC	1 cut(s)	727
Asp700I	GAANNNNTTC	2 cut(s)	290, 540
AspLEI	GCGC	2 cut(s)	62, 859
AspS9I	GGNCC	2 cut(s)	392, 521
AsuHPI	GGTGA	3 cut(s)	146, 262, 335
AsuII	TTCGAA	2 cut(s)	225, 778
AvaI	CYCGRG	1 cut(s)	626
AxyI	CCTNAGG	1 cut(s)	690
BbsI	GAAGAC	1 cut(s)	3
BbvI	GCAGC	1 cut(s)	714
BccI	CCATC	2 cut(s)	64, 392
BceAI	ACGGC	1 cut(s)	36
BciVI	GTATCC	1 cut(s)	580
BclI	TGATCA	1 cut(s)	193
BcoDI	GTCTC	2 cut(s)	644, 708
BfmI	CTRYAG	1 cut(s)	728
BfoI	RGCGCY	1 cut(s)	860
BfrI	CTTAAG	1 cut(s)	553
BfuI	GTATCC	1 cut(s)	580
BglII	AGATCT	2 cut(s)	538, 923
BisI	GCNGC	1 cut(s)	728
BlsI	GCNGC	1 cut(s)	729
BmeT110I	CYCGRG	1 cut(s)	626
BmgT120I	GGNCC	2 cut(s)	392, 521
BmiI	GGNNCC	2 cut(s)	309, 474
BmrI	ACTGGG	1 cut(s)	518
BmsI	GCATC	1 cut(s)	291
BmuI	ACTGGG	1 cut(s)	518
BpiI	GAAGAC	1 cut(s)	3
BpmI	CTGGAG	1 cut(s)	71
Bpu14I	TTCGAA	2 cut(s)	225, 778
BpuEI	CTTGAG	2 cut(s)	622, 872
BsaBI	GATNNNNATC	1 cut(s)	928
BsaHI	GRCGYC	1 cut(s)	881
BsaI	GGTCTC	1 cut(s)	708
BsaJI	CCNNGG	2 cut(s)	18, 951
Bsc4I	CCNNNNNNNGG	3 cut(s)	282, 482, 754
Bse1I	ACTGG	2 cut(s)	524, 666
Bse21I	CCTNAGG	1 cut(s)	690
Bse3DI	GCAATG	1 cut(s)	653
Bse8I	GATNNNNATC	1 cut(s)	928
BseDI	CCNNGG	2 cut(s)	18, 951
BseGI	GGATG	2 cut(s)	306, 961
BseJI	GATNNNNATC	1 cut(s)	928
BseLI	CCNNNNNNNGG	3 cut(s)	282, 482, 754
BseMI	GCAATG	1 cut(s)	653
BseMII	CTCAG	2 cut(s)	681, 882
BseNI	ACTGG	2 cut(s)	524, 666
BseRI	GAGGAG	1 cut(s)	908
BseXI	GCAGC	1 cut(s)	714
Bsh1236I	CGCG	1 cut(s)	60
BshFI	GGCC	2 cut(s)	394, 522
BsiHKCI	CYCGRG	1 cut(s)	626
BslI	CCNNNNNNNGG	3 cut(s)	282, 482, 754
BsmAI	GTCTC	2 cut(s)	644, 708
BsnI	GGCC	2 cut(s)	394, 522
Bso31I	GGTCTC	1 cut(s)	708
BsoBI	CYCGRG	1 cut(s)	626
Bsp119I	TTCGAA	2 cut(s)	225, 778
Bsp143I	GATC	4 cut(s)	166, 193, 538, 923
Bsp19I	CCATGG	1 cut(s)	951
BspACI	CCGC	1 cut(s)	745
BspANI	GGCC	2 cut(s)	394, 522
BspCNI	CTCAG	2 cut(s)	682, 883
BspFNI	CGCG	1 cut(s)	60
BspLI	GGNNCC	2 cut(s)	309, 474
BspMAI	CTGCAG	1 cut(s)	732
BspT104I	TTCGAA	2 cut(s)	225, 778
BspTI	CTTAAG	1 cut(s)	553
BspTNI	GGTCTC	1 cut(s)	708
BsrDI	GCAATG	1 cut(s)	653
BsrI	ACTGG	2 cut(s)	524, 666
BssECI	CCNNGG	2 cut(s)	18, 951
BssMI	GATC	4 cut(s)	166, 193, 538, 923
BssNI	GRCGYC	1 cut(s)	881
BssT1I	CCWWGG	1 cut(s)	951
Bst4CI	ACNGT	3 cut(s)	333, 838, 941
BstACI	GRCGYC	1 cut(s)	881
BstAFI	CTTAAG	1 cut(s)	553
BstBI	TTCGAA	2 cut(s)	225, 778
BstC8I	GCNNGC	2 cut(s)	520, 570
BstDEI	CTNAG	2 cut(s)	690, 891
BstDSI	CCRYGG	2 cut(s)	18, 951
BstF5I	GGATG	2 cut(s)	306, 961
BstFNI	CGCG	1 cut(s)	60
BstH2I	RGCGCY	1 cut(s)	860
BstHHI	GCGC	2 cut(s)	62, 859
BstKTI	GATC	4 cut(s)	169, 196, 541, 926
BstMAI	GTCTC	2 cut(s)	644, 708
BstMBI	GATC	4 cut(s)	166, 193, 538, 923
BstMWI	GCNNNNNNNGC	1 cut(s)	578
BstSFI	CTRYAG	1 cut(s)	728
BstUI	CGCG	1 cut(s)	60
BstV1I	GCAGC	1 cut(s)	714
BstV2I	GAAGAC	1 cut(s)	3
BstX2I	RGATCY	2 cut(s)	538, 923
BstYI	RGATCY	2 cut(s)	538, 923
Bsu36I	CCTNAGG	1 cut(s)	690
BsuI	GTATCC	1 cut(s)	580
BsuRI	GGCC	2 cut(s)	394, 522
BtgI	CCRYGG	2 cut(s)	18, 951
BtgZI	GCGATG	1 cut(s)	516
BtsCI	GGATG	2 cut(s)	306, 961
BtsIMutI	CAGTG	4 cut(s)	164, 531, 659, 834
Cac8I	GCNNGC	2 cut(s)	520, 570
CaiI	CAGNNNCTG	1 cut(s)	890
CfoI	GCGC	2 cut(s)	62, 859
Cfr13I	GGNCC	2 cut(s)	392, 521
CseI	GACGC	1 cut(s)	808
Csp6I	GTAC	1 cut(s)	773
CviAII	CATG	1 cut(s)	952
CviQI	GTAC	1 cut(s)	773
DdeI	CTNAG	2 cut(s)	690, 891
DpnI	GATC	4 cut(s)	168, 195, 540, 925
DpnII	GATC	4 cut(s)	166, 193, 538, 923
DrdI	GACNNNNNNGTC	1 cut(s)	886
DseDI	GACNNNNNNGTC	1 cut(s)	886
EciI	GGCGGA	1 cut(s)	734
Eco130I	CCWWGG	1 cut(s)	951
Eco31I	GGTCTC	1 cut(s)	708
Eco57I	CTGAAG	3 cut(s)	339, 444, 498
Eco81I	CCTNAGG	1 cut(s)	690
Eco88I	CYCGRG	1 cut(s)	626
EcoO109I	RGGNCCY	1 cut(s)	392
EcoT14I	CCWWGG	1 cut(s)	951
ErhI	CCWWGG	1 cut(s)	951
FaeI	CATG	1 cut(s)	955
FaiI	YATR	9 cut(s)	47, 125, 203, 260, 431, 617, 638, 771, 953
FalI	AAGNNNNNCTT	2 cut(s)	278, 310
FatI	CATG	1 cut(s)	951
FbaI	TGATCA	1 cut(s)	193
FblI	GTMKAC	1 cut(s)	255
Fnu4HI	GCNGC	1 cut(s)	728
FokI	GGATG	1 cut(s)	313
Fsp4HI	GCNGC	1 cut(s)	728
GlaI	GCGC	2 cut(s)	61, 858
GluI	GCNGC	1 cut(s)	728
GsuI	CTGGAG	1 cut(s)	71
HaeII	RGCGCY	1 cut(s)	860
HaeIII	GGCC	2 cut(s)	394, 522
HgaI	GACGC	1 cut(s)	808
HhaI	GCGC	2 cut(s)	62, 859
Hin1I	GRCGYC	1 cut(s)	881
Hin1II	CATG	1 cut(s)	955
Hin6I	GCGC	2 cut(s)	60, 857
HinP1I	GCGC	2 cut(s)	60, 857
HphI	GGTGA	3 cut(s)	146, 262, 335
Hpy166II	GTNNAC	4 cut(s)	256, 270, 737, 834
Hpy188I	TCNGA	5 cut(s)	198, 424, 886, 892, 928
Hpy188III	TCNNGA	6 cut(s)	98, 209, 246, 453, 707, 851
Hpy8I	GTNNAC	4 cut(s)	256, 270, 737, 834
HpyAV	CCTTC	5 cut(s)	243, 314, 383, 590, 907
HpyCH4III	ACNGT	3 cut(s)	333, 838, 941
HpyCH4IV	ACGT	1 cut(s)	881
HpyCH4V	TGCA	4 cut(s)	37, 151, 304, 730
HpyF10VI	GCNNNNNNNGC	1 cut(s)	578
HpyF3I	CTNAG	2 cut(s)	690, 891
HpySE526I	ACGT	1 cut(s)	881
Hsp92I	GRCGYC	1 cut(s)	881
Hsp92II	CATG	1 cut(s)	955
HspAI	GCGC	2 cut(s)	60, 857
Ksp22I	TGATCA	1 cut(s)	193
Kzo9I	GATC	4 cut(s)	166, 193, 538, 923
LmnI	GCTCC	2 cut(s)	100, 307
Lsp1109I	GCAGC	1 cut(s)	714
LweI	GCATC	1 cut(s)	291
MaeII	ACGT	1 cut(s)	881
MaeIII	GTNAC	4 cut(s)	323, 505, 557, 935
MalI	GATC	4 cut(s)	168, 195, 540, 925
MboI	GATC	4 cut(s)	166, 193, 538, 923
MboII	GAAGA	7 cut(s)	3, 200, 398, 437, 504, 533, 548
MflI	RGATCY	2 cut(s)	538, 923
MluCI	AATT	3 cut(s)	42, 349, 530
MlyI	GAGTC	5 cut(s)	320, 742, 896, 905, 968
MroXI	GAANNNNTTC	2 cut(s)	290, 540
MseI	TTAA	4 cut(s)	234, 348, 554, 920
MslI	CAYNNNNRTG	1 cut(s)	334
MspA1I	CMGCKG	1 cut(s)	518
MspCI	CTTAAG	1 cut(s)	553
MvnI	CGCG	1 cut(s)	60
MwoI	GCNNNNNNNGC	1 cut(s)	578
NcoI	CCATGG	1 cut(s)	951
NdeII	GATC	4 cut(s)	166, 193, 538, 923
NlaIII	CATG	1 cut(s)	955
NlaIV	GGNNCC	2 cut(s)	309, 474
NmuCI	GTSAC	1 cut(s)	323
NspV	TTCGAA	2 cut(s)	225, 778
OliI	CACNNNNGTG	1 cut(s)	334
PdmI	GAANNNNTTC	2 cut(s)	290, 540
PfeI	GAWTC	5 cut(s)	462, 549, 758, 866, 929
PflMI	CCANNNNNTGG	1 cut(s)	754
PkrI	GCNGC	1 cut(s)	729
PleI	GAGTC	5 cut(s)	320, 741, 895, 904, 967
PpsI	GAGTC	5 cut(s)	320, 741, 895, 904, 967
PspN4I	GGNNCC	2 cut(s)	309, 474
PspPI	GGNCC	2 cut(s)	392, 521
PstI	CTGCAG	1 cut(s)	732
PstNI	CAGNNNCTG	1 cut(s)	890
PsuI	RGATCY	2 cut(s)	538, 923
PvuII	CAGCTG	1 cut(s)	518
RsaI	GTAC	1 cut(s)	774
RsaNI	GTAC	1 cut(s)	773
RseI	CAYNNNNRTG	1 cut(s)	334
SaqAI	TTAA	4 cut(s)	234, 348, 554, 920
SatI	GCNGC	1 cut(s)	728
Sau3AI	GATC	4 cut(s)	166, 193, 538, 923
Sau96I	GGNCC	2 cut(s)	392, 521
SchI	GAGTC	5 cut(s)	320, 742, 896, 905, 968
SfaNI	GCATC	1 cut(s)	291
SfcI	CTRYAG	1 cut(s)	728
SfuI	TTCGAA	2 cut(s)	225, 778
SmiMI	CAYNNNNRTG	1 cut(s)	334
SmlI	CTYRAG	3 cut(s)	553, 601, 851
SmoI	CTYRAG	3 cut(s)	553, 601, 851
Sse9I	AATT	3 cut(s)	42, 349, 530
SsiI	CCGC	1 cut(s)	745
StyI	CCWWGG	1 cut(s)	951
TaaI	ACNGT	3 cut(s)	333, 838, 941
TaiI	ACGT	1 cut(s)	884
TaqI	TCGA	4 cut(s)	225, 364, 778, 899
TasI	AATT	3 cut(s)	42, 349, 530
TatI	WGTACW	1 cut(s)	772
TfiI	GAWTC	5 cut(s)	462, 549, 758, 866, 929
Tru1I	TTAA	4 cut(s)	234, 348, 554, 920
Tru9I	TTAA	4 cut(s)	234, 348, 554, 920
TscAI	CASTG	4 cut(s)	164, 531, 666, 841
TseFI	GTSAC	1 cut(s)	323
TseI	GCWGC	1 cut(s)	727
Tsp45I	GTSAC	1 cut(s)	323
TspDTI	ATGAA	3 cut(s)	438, 609, 750
TspRI	CASTG	4 cut(s)	164, 531, 666, 841
Van91I	CCANNNNNTGG	1 cut(s)	754
Vha464I	CTTAAG	1 cut(s)	553
XmiI	GTMKAC	1 cut(s)	255
XmnI	GAANNNNTTC	2 cut(s)	290, 540
ZraI	GACGTC	1 cut(s)	882

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.