Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0006241

Physical Location & Seq

Genomic Coordinates Reverse (-)

5456784 .. 5463721

Gene Structure 6938 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g06040.t6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGGCTCGTCTTCAACCGATGCTTTCCCACAAATGCAGATAGGATTTTTGGATGAAATTAAGACTATGGATGAGCGATATCCACTGAGCACTGAGCAGGAAATTATGCTGGAGTTTCGAGCTGGTAAAATGGCTTTTGAGGGGAAAAGGGTTGTTCCCGATACTCGTAAAGGACTTGTTCGCATAGCAAGGGGTGAAGAGGGTTTGGTGCATTTCCAGTGGCTTGATCGGAATCTAAATGTTGTTGAAGATGATCAGATTGTTTTTCCTGATGAAGCAGTTTTTGAAAAGGTTAATCAAGCATCGGGAAGGGTGTACATACTAAAATTCAACACCGATGATAGGAAGTTTTTCTTTTGGATGCAGGAGCCGAAAGCTGAAGATGACACACAGTTATGTACCTCCGTTAATTACTACATCAATCGACCAATAGAAGAAGAAGAAGAAGAAGGCCCTGATGGCTCTGTTCCTCTAACAGCTGATGATATGTTTGAAGATGATATTTCATCAAGAGCTGGAATCTTGTTGGAACCAAACTTGGGTGCGGAAGTAAGTAGCGATGTAACCTCTTCTTCTGGCCCAGTGAAGTTGGAAGATCTTCAAAGAATCTTGAGTAACATTGATCGTGCAGATAGTGCTGGGGATCCAGATGGAGGCATAAGTTTGGAGGATATACTGACACCTGATTTGATTCTGCCACTGATTGAGACAATGCCACTGCAACAGAGTTTAGGATCTTACTTGCCTGAGGGTGAATGGTCTCCGGAGGATATATTGGAGTTGCTGCAGAGTCCACCGTTCCGCCAACAAATGGATTCATTCAATTATGTACTTCGAACAGGACAGATAGATTTGACTCAGTTTGGTATTAACCCAAGCAAATATAAGTTCACAGTATTGTCTTTTCTTGAGGCACTTGAGGATTCAGTTTCAAAATCATCTGAGGAATCAATGCAAGACGACAAGGATTTGAGATCTGAATCTTGTAATCCCATGGATGAATCCCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005838 GO:0006508 GO:0006511 GO:0006807 GO:0008047 GO:0008150 GO:0008152 GO:0008541 GO:0009056 GO:0009057 GO:0009893 GO:0009987 GO:0010604 GO:0010950 GO:0010952 GO:0016043 GO:0016504 GO:0019222 GO:0019538 GO:0019941 GO:0022607 GO:0022624 GO:0030162 GO:0030163 GO:0030234 GO:0031323 GO:0031325 GO:0032182 GO:0032268 GO:0032270 GO:0032991 GO:0034622 GO:0043085 GO:0043130 GO:0043170 GO:0043248 GO:0043632 GO:0043933 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0044877 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051336 GO:0051345 GO:0051603 GO:0052547 GO:0052548 GO:0060255 GO:0061133 GO:0061134 GO:0061135 GO:0065003 GO:0065007 GO:0065009 GO:0070628 GO:0071704 GO:0071840 GO:0080090 GO:0098772 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

Proteasom_Rpn13 RPN13_C

Protein Analysis

337

Amino Acids

37.93

Weight (kDa)

4.15

Isoelectric Point (pI)

60.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rpn13_ADRM1_Pru	PF04683	2 - 98	5e-32	Proteasome complex subunit Rpn13, Pru domain
RPN13_C	PF16550	166 - 271	7.6e-26	UCH-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006241)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26590 AT2G26590 AT2G26590 AT2G26590
fragaria_vesca	FvH4_4g06040 FvH4_4g06040 FvH4_4g06040 FvH4_4g06040 FvH4_4g06040 FvH4_4g06040 FvH4_4g06040
malus_domestica	MD16G1238000.v1.1
prunus_persica	Prupe.1G063800_v2.0.a1 Prupe.1G063800_v2.0.a1 Prupe.1G063800_v2.0.a1 Prupe.1G063800_v2.0.a1
pyrus_communis	pycom16g19920
rosa_chinensis	RchiOBHm_Chr4g0397601
rosa_laevigata	RLG00000009425
rosa_multiflora	Rmu_sc0005653.1_g000003
rosa_roxburghii	Rroxscaffold_5G00342410
rosa_rugosa	Rorug03G0342400
rosa_samantha	Rh4AG079200 Rh4BG077100 Rh4CG084800 Rh4DG072200
rosa_wichuraiana	Rw4G006480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	811
AccIII	TCCGGA	1 cut(s)	763
AciI	CCGC	2 cut(s)	545, 802
AclWI	GGATC	3 cut(s)	638, 651, 742
AcsI	RAATTY	1 cut(s)	326
AcuI	CTGAAG	1 cut(s)	399
AfaI	GTAC	3 cut(s)	317, 400, 831
AfiI	CCNNNNNNNGG	4 cut(s)	342, 539, 653, 811
AgsI	TTSAA	8 cut(s)	15, 248, 287, 331, 494, 602, 823, 933
AluBI	AGCT	4 cut(s)	122, 377, 479, 515
AluI	AGCT	4 cut(s)	122, 377, 479, 515
Alw21I	GWGCWC	1 cut(s)	92
Alw26I	GTCTC	2 cut(s)	701, 765
AlwI	GGATC	3 cut(s)	638, 651, 742
Aor13HI	TCCGGA	1 cut(s)	763
AoxI	GGCC	2 cut(s)	451, 577
ApeKI	GCWGC	1 cut(s)	784
ApoI	RAATTY	1 cut(s)	326
ArsI	GACNNNNNNTTYG	2 cut(s)	670, 702
Asp700I	GAANNNNTTC	2 cut(s)	350, 597
AspS9I	GGNCC	2 cut(s)	452, 578
AsuHPI	GGTGA	2 cut(s)	206, 764
AsuII	TTCGAA	1 cut(s)	835
AxyI	CCTNAGG	1 cut(s)	747
BamHI	GGATCC	1 cut(s)	643
BanII	GRGCYC	1 cut(s)	8
BbsI	GAAGAC	1 cut(s)	3
Bbv12I	GWGCWC	1 cut(s)	92
BbvI	GCAGC	1 cut(s)	771
BccI	CCATC	2 cut(s)	452, 644
BclI	TGATCA	1 cut(s)	253
BcoDI	GTCTC	2 cut(s)	701, 765
BfmI	CTRYAG	1 cut(s)	785
BglI	GCCNNNNNGGC	1 cut(s)	459
BglII	AGATCT	2 cut(s)	595, 974
BisI	GCNGC	1 cut(s)	785
BlsI	GCNGC	1 cut(s)	786
BmgT120I	GGNCC	2 cut(s)	452, 578
BmiI	GGNNCC	3 cut(s)	369, 531, 645
BmrI	ACTGGG	2 cut(s)	575, 1000
BmsI	GCATC	3 cut(s)	10, 311, 351
BmuI	ACTGGG	2 cut(s)	575, 1000
BpiI	GAAGAC	1 cut(s)	3
BpmI	CTGGAG	1 cut(s)	131
Bpu14I	TTCGAA	1 cut(s)	835
BpuEI	CTTGAG	3 cut(s)	631, 929, 938
BsaBI	GATNNNNATC	2 cut(s)	231, 979
BsaI	GGTCTC	1 cut(s)	765
BsaJI	CCNNGG	1 cut(s)	993
BsaWI	WCCGGW	1 cut(s)	763
Bsc4I	CCNNNNNNNGG	4 cut(s)	342, 539, 653, 811
Bse1I	ACTGG	3 cut(s)	217, 581, 1006
Bse21I	CCTNAGG	1 cut(s)	747
Bse8I	GATNNNNATC	2 cut(s)	231, 979
BseAI	TCCGGA	1 cut(s)	763
BseDI	CCNNGG	1 cut(s)	993
BseGI	GGATG	4 cut(s)	58, 76, 366, 1003
BseJI	GATNNNNATC	2 cut(s)	231, 979
BseLI	CCNNNNNNNGG	4 cut(s)	342, 539, 653, 811
BseMII	CTCAG	5 cut(s)	77, 84, 738, 872, 933
BseNI	ACTGG	3 cut(s)	217, 581, 1006
BseXI	GCAGC	1 cut(s)	771
BseYI	CCCAGC	1 cut(s)	638
BsgI	GTGCAG	1 cut(s)	648
BshFI	GGCC	2 cut(s)	453, 579
BsiHKAI	GWGCWC	1 cut(s)	92
BsiSI	CCGG	1 cut(s)	764
BslI	CCNNNNNNNGG	4 cut(s)	342, 539, 653, 811
BsmAI	GTCTC	2 cut(s)	701, 765
BsnI	GGCC	2 cut(s)	453, 579
Bso31I	GGTCTC	1 cut(s)	765
Bsp119I	TTCGAA	1 cut(s)	835
Bsp1286I	GDGCHC	2 cut(s)	8, 92
Bsp13I	TCCGGA	1 cut(s)	763
Bsp1407I	TGTACA	1 cut(s)	315
Bsp143I	GATC	7 cut(s)	226, 253, 595, 622, 643, 734, 974
Bsp19I	CCATGG	1 cut(s)	993
BspACI	CCGC	2 cut(s)	545, 802
BspANI	GGCC	2 cut(s)	453, 579
BspCNI	CTCAG	5 cut(s)	78, 85, 739, 871, 934
BspEI	TCCGGA	1 cut(s)	763
BspLI	GGNNCC	3 cut(s)	369, 531, 645
BspMAI	CTGCAG	1 cut(s)	789
BspPI	GGATC	3 cut(s)	638, 651, 742
BspT104I	TTCGAA	1 cut(s)	835
BspTNI	GGTCTC	1 cut(s)	765
BsrGI	TGTACA	1 cut(s)	315
BsrI	ACTGG	3 cut(s)	217, 581, 1006
BssECI	CCNNGG	1 cut(s)	993
BssMI	GATC	7 cut(s)	226, 253, 595, 622, 643, 734, 974
BssT1I	CCWWGG	1 cut(s)	993
Bst4CI	ACNGT	3 cut(s)	393, 798, 895
Bst6I	CTCTTC	2 cut(s)	192, 574
BstAPI	GCANNNNNTGC	1 cut(s)	635
BstAUI	TGTACA	1 cut(s)	315
BstBI	TTCGAA	1 cut(s)	835
BstDEI	CTNAG	5 cut(s)	86, 93, 747, 858, 942
BstDSI	CCRYGG	1 cut(s)	993
BstF5I	GGATG	4 cut(s)	58, 76, 366, 1003
BstKTI	GATC	7 cut(s)	229, 256, 598, 625, 646, 737, 977
BstMAI	GTCTC	2 cut(s)	701, 765
BstMBI	GATC	7 cut(s)	226, 253, 595, 622, 643, 734, 974
BstMWI	GCNNNNNNNGC	2 cut(s)	459, 635
BstSFI	CTRYAG	1 cut(s)	785
BstV1I	GCAGC	1 cut(s)	771
BstV2I	GAAGAC	1 cut(s)	3
BstX2I	RGATCY	4 cut(s)	595, 643, 734, 974
BstYI	RGATCY	4 cut(s)	595, 643, 734, 974
Bsu36I	CCTNAGG	1 cut(s)	747
BsuRI	GGCC	2 cut(s)	453, 579
BtgI	CCRYGG	1 cut(s)	993
BtgZI	GCGATG	1 cut(s)	573
BtsCI	GGATG	4 cut(s)	58, 76, 366, 1003
BtsI	GCAGTG	1 cut(s)	716
BtsIMutI	CAGTG	6 cut(s)	83, 90, 224, 588, 698, 716
Cfr13I	GGNCC	2 cut(s)	452, 578
Csp6I	GTAC	3 cut(s)	316, 399, 830
CviAII	CATG	1 cut(s)	994
CviQI	GTAC	3 cut(s)	316, 399, 830
DdeI	CTNAG	5 cut(s)	86, 93, 747, 858, 942
DpnI	GATC	7 cut(s)	228, 255, 597, 624, 645, 736, 976
DpnII	GATC	7 cut(s)	226, 253, 595, 622, 643, 734, 974
Eam1104I	CTCTTC	2 cut(s)	192, 574
EarI	CTCTTC	2 cut(s)	192, 574
EciI	GGCGGA	1 cut(s)	791
Eco130I	CCWWGG	1 cut(s)	993
Eco24I	GRGCYC	1 cut(s)	8
Eco31I	GGTCTC	1 cut(s)	765
Eco32I	GATATC	1 cut(s)	80
Eco57I	CTGAAG	1 cut(s)	399
Eco81I	CCTNAGG	1 cut(s)	747
EcoO109I	RGGNCCY	1 cut(s)	452
EcoRV	GATATC	1 cut(s)	80
EcoT14I	CCWWGG	1 cut(s)	993
EcoT38I	GRGCYC	1 cut(s)	8
ErhI	CCWWGG	1 cut(s)	993
FaeI	CATG	1 cut(s)	997
FalI	AAGNNNNNCTT	2 cut(s)	338, 370
FatI	CATG	1 cut(s)	993
FbaI	TGATCA	1 cut(s)	253
Fnu4HI	GCNGC	1 cut(s)	785
FokI	GGATG	3 cut(s)	65, 83, 373
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	1 cut(s)	785
GluI	GCNGC	1 cut(s)	785
GsaI	CCCAGC	1 cut(s)	642
GsuI	CTGGAG	1 cut(s)	131
HaeIII	GGCC	2 cut(s)	453, 579
HapII	CCGG	1 cut(s)	764
Hin1II	CATG	1 cut(s)	997
HpaII	CCGG	1 cut(s)	764
HphI	GGTGA	2 cut(s)	206, 764
Hpy166II	GTNNAC	3 cut(s)	316, 794, 891
Hpy188I	TCNGA	4 cut(s)	231, 258, 943, 979
Hpy188III	TCNNGA	8 cut(s)	158, 269, 306, 510, 610, 647, 764, 908
Hpy8I	GTNNAC	3 cut(s)	316, 794, 891
HpyAV	CCTTC	2 cut(s)	303, 443
HpyCH4III	ACNGT	3 cut(s)	393, 798, 895
HpyCH4V	TGCA	7 cut(s)	37, 211, 364, 629, 721, 787, 955
HpyF10VI	GCNNNNNNNGC	2 cut(s)	459, 635
HpyF3I	CTNAG	5 cut(s)	86, 93, 747, 858, 942
Hsp92II	CATG	1 cut(s)	997
Kpn2I	TCCGGA	1 cut(s)	763
Ksp22I	TGATCA	1 cut(s)	253
Kzo9I	GATC	7 cut(s)	226, 253, 595, 622, 643, 734, 974
LmnI	GCTCC	1 cut(s)	367
Lsp1109I	GCAGC	1 cut(s)	771
LweI	GCATC	3 cut(s)	10, 311, 351
MaeIII	GTNAC	2 cut(s)	562, 614
MalI	GATC	7 cut(s)	228, 255, 597, 624, 645, 736, 976
MboI	GATC	7 cut(s)	226, 253, 595, 622, 643, 734, 974
MflI	RGATCY	4 cut(s)	595, 643, 734, 974
MhlI	GDGCHC	2 cut(s)	8, 92
MluCI	AATT	5 cut(s)	57, 102, 326, 409, 823
MlyI	GAGTC	2 cut(s)	799, 850
MmeI	TCCRAC	2 cut(s)	507, 570
MroI	TCCGGA	1 cut(s)	763
MroXI	GAANNNNTTC	2 cut(s)	350, 597
MseI	TTAA	4 cut(s)	60, 294, 408, 870
MslI	CAYNNNNRTG	1 cut(s)	394
MspA1I	CMGCKG	1 cut(s)	479
MspI	CCGG	1 cut(s)	764
MwoI	GCNNNNNNNGC	2 cut(s)	459, 635
NcoI	CCATGG	1 cut(s)	993
NdeII	GATC	7 cut(s)	226, 253, 595, 622, 643, 734, 974
NlaIII	CATG	1 cut(s)	997
NlaIV	GGNNCC	3 cut(s)	369, 531, 645
NspV	TTCGAA	1 cut(s)	835
PdmI	GAANNNNTTC	2 cut(s)	350, 597
PfeI	GAWTC	9 cut(s)	232, 519, 606, 691, 815, 923, 947, 980, 1001
PflMI	CCANNNNNTGG	1 cut(s)	811
PkrI	GCNGC	1 cut(s)	786
PleI	GAGTC	2 cut(s)	798, 850
PpsI	GAGTC	2 cut(s)	798, 850
PspFI	CCCAGC	1 cut(s)	638
PspN4I	GGNNCC	3 cut(s)	369, 531, 645
PspPI	GGNCC	2 cut(s)	452, 578
PstI	CTGCAG	1 cut(s)	789
PsuI	RGATCY	4 cut(s)	595, 643, 734, 974
PvuII	CAGCTG	1 cut(s)	479
RsaI	GTAC	3 cut(s)	317, 400, 831
RsaNI	GTAC	3 cut(s)	316, 399, 830
RseI	CAYNNNNRTG	1 cut(s)	394
SaqAI	TTAA	4 cut(s)	60, 294, 408, 870
SatI	GCNGC	1 cut(s)	785
Sau3AI	GATC	7 cut(s)	226, 253, 595, 622, 643, 734, 974
Sau96I	GGNCC	2 cut(s)	452, 578
SchI	GAGTC	2 cut(s)	799, 850
SduI	GDGCHC	2 cut(s)	8, 92
SetI	ASST	8 cut(s)	124, 294, 379, 404, 481, 517, 569, 685
SfaNI	GCATC	3 cut(s)	10, 311, 351
SfcI	CTRYAG	1 cut(s)	785
SfuI	TTCGAA	1 cut(s)	835
SmiMI	CAYNNNNRTG	1 cut(s)	394
SmlI	CTYRAG	3 cut(s)	610, 908, 917
SmoI	CTYRAG	3 cut(s)	610, 908, 917
Sse9I	AATT	5 cut(s)	57, 102, 326, 409, 823
SsiI	CCGC	2 cut(s)	545, 802
StyI	CCWWGG	1 cut(s)	993
TaaI	ACNGT	3 cut(s)	393, 798, 895
TaqI	TCGA	3 cut(s)	118, 424, 835
TasI	AATT	5 cut(s)	57, 102, 326, 409, 823
TatI	WGTACW	2 cut(s)	315, 829
TfiI	GAWTC	9 cut(s)	232, 519, 606, 691, 815, 923, 947, 980, 1001
Tru1I	TTAA	4 cut(s)	60, 294, 408, 870
Tru9I	TTAA	4 cut(s)	60, 294, 408, 870
TscAI	CASTG	6 cut(s)	90, 97, 224, 588, 705, 723
TseI	GCWGC	1 cut(s)	784
TspDTI	ATGAA	4 cut(s)	69, 288, 495, 807
TspGWI	ACGGA	1 cut(s)	394
TspRI	CASTG	6 cut(s)	90, 97, 224, 588, 705, 723
Van91I	CCANNNNNTGG	1 cut(s)	811
XapI	RAATTY	1 cut(s)	326
XmnI	GAANNNNTTC	2 cut(s)	350, 597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.