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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G27110 AT2G27110 AT2G27110 |
| fragaria_vesca | FvH4_7g06621 FvH4_7g06621 |
| malus_domestica | MD06G1010400.v1.1 MD16G1283900.v1.1 |
| prunus_persica | Prupe.5G010000_v2.0.a1 Prupe.5G010000_v2.0.a1 |
| pyrus_communis | pycom06g00850 pycom16g26020 |
| rosa_chinensis | RchiOBHm_Chr1g0335301 |
| rosa_multiflora | Rmu_sc0003404.1_g000006 |
| rosa_roxburghii | Rroxscaffold_4G00316010 |
| rosa_rugosa | Rorug01G0122300 |
| rosa_samantha | Rh1AG143400 Rh1BG112400 Rh1CG135000 Rh1DG149000 |
| rosa_wichuraiana | Rw0G009220 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1863 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 2282 |
| Acc65I | GGTACC | 1 cut(s) | 1204 |
| AccB1I | GGYRCC | 3 cut(s) | 1204, 2110, 2462 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 152, 797 |
| AccII | CGCG | 3 cut(s) | 1815, 2023, 2104 |
| AciI | CCGC | 5 cut(s) | 650, 914, 1795, 2021, 2102 |
| AclI | AACGTT | 1 cut(s) | 1583 |
| AcoI | YGGCCR | 1 cut(s) | 2018 |
| AcsI | RAATTY | 3 cut(s) | 269, 1549, 2288 |
| AcuI | CTGAAG | 1 cut(s) | 1875 |
| AcyI | GRCGYC | 1 cut(s) | 1406 |
| AdeI | CACNNNGTG | 2 cut(s) | 1955, 2462 |
| AfaI | GTAC | 5 cut(s) | 203, 758, 1206, 1325, 1525 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 152, 797, 1253, 2325 |
| AflII | CTTAAG | 1 cut(s) | 2171 |
| AflIII | ACRYGT | 1 cut(s) | 1654 |
| AjnI | CCWGG | 5 cut(s) | 634, 976, 1124, 1467, 2025 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1331, 1363 |
| Alw21I | GWGCWC | 5 cut(s) | 841, 985, 1198, 1635, 2077 |
| Alw26I | GTCTC | 3 cut(s) | 1478, 1708, 2402 |
| Alw44I | GTGCAC | 1 cut(s) | 837 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1997 |
| Ama87I | CYCGRG | 3 cut(s) | 205, 1191, 2448 |
| AoxI | GGCC | 3 cut(s) | 2018, 2067, 2481 |
| ApaLI | GTGCAC | 1 cut(s) | 837 |
| ApeKI | GCWGC | 8 cut(s) | 211, 959, 1235, 1430, 1614, 1934, 1994, 2497 |
| ApoI | RAATTY | 3 cut(s) | 269, 1549, 2288 |
| AseI | ATTAAT | 1 cut(s) | 996 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 310 |
| Asp718I | GGTACC | 1 cut(s) | 1204 |
| AspLEI | GCGC | 3 cut(s) | 790, 1939, 2025 |
| AspS9I | GGNCC | 2 cut(s) | 2067, 2328 |
| AsuC2I | CCSGG | 2 cut(s) | 1220, 2214 |
| AsuHPI | GGTGA | 5 cut(s) | 743, 940, 1404, 1985, 2117 |
| AvaI | CYCGRG | 3 cut(s) | 205, 1191, 2448 |
| AvaII | GGWCC | 1 cut(s) | 2328 |
| BaeGI | GKGCMC | 1 cut(s) | 841 |
| BanI | GGYRCC | 3 cut(s) | 1204, 2110, 2462 |
| BanII | GRGCYC | 2 cut(s) | 1198, 2077 |
| BbsI | GAAGAC | 3 cut(s) | 422, 1165, 1409 |
| Bbv12I | GWGCWC | 5 cut(s) | 841, 985, 1198, 1635, 2077 |
| BbvCI | CCTCAGC | 2 cut(s) | 1833, 2269 |
| BbvI | GCAGC | 8 cut(s) | 223, 946, 1222, 1417, 1626, 1921, 1981, 2509 |
| BccI | CCATC | 8 cut(s) | 242, 1271, 1348, 1417, 1514, 1829, 2054, 2185 |
| BceAI | ACGGC | 1 cut(s) | 1515 |
| BciT130I | CCWGG | 5 cut(s) | 636, 978, 1126, 1469, 2027 |
| BciVI | GTATCC | 1 cut(s) | 1065 |
| BclI | TGATCA | 1 cut(s) | 934 |
| BcnI | CCSGG | 2 cut(s) | 1220, 2214 |
| BcoDI | GTCTC | 3 cut(s) | 1478, 1708, 2402 |
| BfmI | CTRYAG | 2 cut(s) | 1236, 1612 |
| BfrI | CTTAAG | 1 cut(s) | 2171 |
| BfuI | GTATCC | 1 cut(s) | 1065 |
| BglII | AGATCT | 2 cut(s) | 704, 1369 |
| BmcAI | AGTACT | 1 cut(s) | 203 |
| Bme1390I | CCNGG | 7 cut(s) | 636, 978, 1126, 1220, 1469, 2027, 2214 |
| Bme18I | GGWCC | 1 cut(s) | 2328 |
| BmeT110I | CYCGRG | 3 cut(s) | 205, 1191, 2448 |
| BmgT120I | GGNCC | 2 cut(s) | 2067, 2328 |
| BmiI | GGNNCC | 5 cut(s) | 1206, 1267, 2068, 2112, 2464 |
| BmrFI | CCNGG | 7 cut(s) | 636, 978, 1126, 1220, 1469, 2027, 2214 |
| BmsI | GCATC | 4 cut(s) | 316, 511, 577, 609 |
| BpiI | GAAGAC | 3 cut(s) | 422, 1165, 1409 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2486, 2518 |
| BpmI | CTGGAG | 3 cut(s) | 1147, 1377, 2346 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1833, 2269 |
| BpuEI | CTTGAG | 1 cut(s) | 2517 |
| BpuMI | CCSGG | 2 cut(s) | 1220, 2214 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2094 |
| BsaHI | GRCGYC | 1 cut(s) | 1406 |
| BsaJI | CCNNGG | 3 cut(s) | 1252, 1416, 2331 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1331, 1361 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 152, 797, 1253, 2325 |
| Bse118I | RCCGGY | 1 cut(s) | 916 |
| Bse1I | ACTGG | 3 cut(s) | 802, 1394, 2114 |
| Bse3DI | GCAATG | 2 cut(s) | 336, 906 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2094 |
| BseBI | CCWGG | 5 cut(s) | 636, 978, 1126, 1469, 2027 |
| BseDI | CCNNGG | 3 cut(s) | 1252, 1416, 2331 |
| BseGI | GGATG | 8 cut(s) | 10, 526, 592, 624, 1012, 2035, 2196, 2287 |
| BseJI | GATNNNNATC | 1 cut(s) | 2094 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 152, 797, 1253, 2325 |
| BseMI | GCAATG | 2 cut(s) | 336, 906 |
| BseMII | CTCAG | 6 cut(s) | 306, 1211, 1824, 1897, 2136, 2283 |
| BseNI | ACTGG | 3 cut(s) | 802, 1394, 2114 |
| BseRI | GAGGAG | 2 cut(s) | 549, 1124 |
| BseSI | GKGCMC | 1 cut(s) | 841 |
| BseXI | GCAGC | 8 cut(s) | 223, 946, 1222, 1417, 1626, 1921, 1981, 2509 |
| Bsh1236I | CGCG | 3 cut(s) | 1815, 2023, 2104 |
| BshFI | GGCC | 3 cut(s) | 2020, 2069, 2483 |
| BshNI | GGYRCC | 3 cut(s) | 1204, 2110, 2462 |
| BsiHKAI | GWGCWC | 5 cut(s) | 841, 985, 1198, 1635, 2077 |
| BsiHKCI | CYCGRG | 3 cut(s) | 205, 1191, 2448 |
| BsiSI | CCGG | 4 cut(s) | 917, 1219, 1638, 2213 |
| BslFI | GGGAC | 1 cut(s) | 2431 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 152, 797, 1253, 2325 |
| BsmAI | GTCTC | 3 cut(s) | 1478, 1708, 2402 |
| BsmBI | CGTCTC | 1 cut(s) | 1708 |
| BsmFI | GGGAC | 1 cut(s) | 2431 |
| BsnI | GGCC | 3 cut(s) | 2020, 2069, 2483 |
| BsoBI | CYCGRG | 3 cut(s) | 205, 1191, 2448 |
| Bsp1286I | GDGCHC | 5 cut(s) | 841, 985, 1198, 1635, 2077 |
| Bsp143I | GATC | 6 cut(s) | 704, 907, 934, 1369, 2089, 2474 |
| Bsp19I | CCATGG | 2 cut(s) | 1416, 2331 |
| Bsp68I | TCGCGA | 1 cut(s) | 1815 |
| BspACI | CCGC | 5 cut(s) | 650, 914, 1795, 2021, 2102 |
| BspANI | GGCC | 3 cut(s) | 2020, 2069, 2483 |
| BspCNI | CTCAG | 6 cut(s) | 307, 1210, 1825, 1896, 2137, 2282 |
| BspFNI | CGCG | 3 cut(s) | 1815, 2023, 2104 |
| BspHI | TCATGA | 2 cut(s) | 43, 355 |
| BspLI | GGNNCC | 5 cut(s) | 1206, 1267, 2068, 2112, 2464 |
| BspMAI | CTGCAG | 2 cut(s) | 1240, 1616 |
| BspQI | GCTCTTC | 1 cut(s) | 2166 |
| BspT107I | GGYRCC | 3 cut(s) | 1204, 2110, 2462 |
| BspTI | CTTAAG | 1 cut(s) | 2171 |
| BsrDI | GCAATG | 2 cut(s) | 336, 906 |
| BsrFI | RCCGGY | 1 cut(s) | 916 |
| BsrI | ACTGG | 3 cut(s) | 802, 1394, 2114 |
| BssAI | RCCGGY | 1 cut(s) | 916 |
| BssECI | CCNNGG | 3 cut(s) | 1252, 1416, 2331 |
| BssMI | GATC | 6 cut(s) | 704, 907, 934, 1369, 2089, 2474 |
| BssNI | GRCGYC | 1 cut(s) | 1406 |
| BssT1I | CCWWGG | 3 cut(s) | 1252, 1416, 2331 |
| Bst2UI | CCWGG | 5 cut(s) | 636, 978, 1126, 1469, 2027 |
| Bst4CI | ACNGT | 6 cut(s) | 739, 992, 1381, 1666, 1675, 1719 |
| Bst6I | CTCTTC | 4 cut(s) | 15, 563, 1467, 2166 |
| BstACI | GRCGYC | 1 cut(s) | 1406 |
| BstAFI | CTTAAG | 1 cut(s) | 2171 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1647 |
| BstC8I | GCNNGC | 3 cut(s) | 624, 1035, 2348 |
| BstDSI | CCRYGG | 2 cut(s) | 1416, 2331 |
| BstEII | GGTNACC | 1 cut(s) | 739 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1251 |
| BstF5I | GGATG | 8 cut(s) | 10, 526, 592, 624, 1012, 2035, 2196, 2287 |
| BstFNI | CGCG | 3 cut(s) | 1815, 2023, 2104 |
| BstHHI | GCGC | 3 cut(s) | 790, 1939, 2025 |
| BstKTI | GATC | 6 cut(s) | 707, 910, 937, 1372, 2092, 2477 |
| BstMAI | GTCTC | 3 cut(s) | 1478, 1708, 2402 |
| BstMBI | GATC | 6 cut(s) | 704, 907, 934, 1369, 2089, 2474 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 545, 554, 1499, 1647, 1850, 2020 |
| BstNI | CCWGG | 5 cut(s) | 636, 978, 1126, 1469, 2027 |
| BstNSI | RCATGY | 2 cut(s) | 1658, 1763 |
| BstPI | GGTNACC | 1 cut(s) | 739 |
| BstSCI | CCNGG | 7 cut(s) | 634, 976, 1124, 1218, 1467, 2025, 2212 |
| BstSFI | CTRYAG | 2 cut(s) | 1236, 1612 |
| BstSLI | GKGCMC | 1 cut(s) | 841 |
| BstUI | CGCG | 3 cut(s) | 1815, 2023, 2104 |
| BstV1I | GCAGC | 8 cut(s) | 223, 946, 1222, 1417, 1626, 1921, 1981, 2509 |
| BstV2I | GAAGAC | 3 cut(s) | 422, 1165, 1409 |
| BstX2I | RGATCY | 2 cut(s) | 704, 1369 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1741 |
| BstYI | RGATCY | 2 cut(s) | 704, 1369 |
| BsuI | GTATCC | 1 cut(s) | 1065 |
| BsuRI | GGCC | 3 cut(s) | 2020, 2069, 2483 |
| BtgI | CCRYGG | 2 cut(s) | 1416, 2331 |
| BtsCI | GGATG | 8 cut(s) | 10, 526, 592, 624, 1012, 2035, 2196, 2287 |
| BtsI | GCAGTG | 2 cut(s) | 91, 1245 |
| BtsIMutI | CAGTG | 7 cut(s) | 91, 988, 1205, 1245, 1377, 1771, 2121 |
| BtuMI | TCGCGA | 1 cut(s) | 1815 |
| Cac8I | GCNNGC | 3 cut(s) | 624, 1035, 2348 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1997 |
| CciI | TCATGA | 2 cut(s) | 43, 355 |
| CfoI | GCGC | 3 cut(s) | 790, 1939, 2025 |
| Cfr10I | RCCGGY | 1 cut(s) | 916 |
| Cfr13I | GGNCC | 2 cut(s) | 2067, 2328 |
| CseI | GACGC | 3 cut(s) | 537, 1414, 2293 |
| Csp6I | GTAC | 5 cut(s) | 202, 757, 1205, 1324, 1524 |
| CviQI | GTAC | 5 cut(s) | 202, 757, 1205, 1324, 1524 |
| DpnI | GATC | 6 cut(s) | 706, 909, 936, 1371, 2091, 2476 |
| DpnII | GATC | 6 cut(s) | 704, 907, 934, 1369, 2089, 2474 |
| DraI | TTTAAA | 1 cut(s) | 2241 |
| DraIII | CACNNNGTG | 2 cut(s) | 1955, 2462 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2282 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2282 |
| EaeI | YGGCCR | 1 cut(s) | 2018 |
| Eam1104I | CTCTTC | 4 cut(s) | 15, 563, 1467, 2166 |
| EarI | CTCTTC | 4 cut(s) | 15, 563, 1467, 2166 |
| Ecl136II | GAGCTC | 2 cut(s) | 1196, 2075 |
| Eco130I | CCWWGG | 3 cut(s) | 1252, 1416, 2331 |
| Eco24I | GRGCYC | 2 cut(s) | 1198, 2077 |
| Eco47I | GGWCC | 1 cut(s) | 2328 |
| Eco53kI | GAGCTC | 2 cut(s) | 1196, 2075 |
| Eco57I | CTGAAG | 1 cut(s) | 1875 |
| Eco88I | CYCGRG | 3 cut(s) | 205, 1191, 2448 |
| Eco91I | GGTNACC | 1 cut(s) | 739 |
| EcoICRI | GAGCTC | 2 cut(s) | 1196, 2075 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1251 |
| EcoO65I | GGTNACC | 1 cut(s) | 739 |
| EcoRII | CCWGG | 5 cut(s) | 634, 976, 1124, 1467, 2025 |
| EcoT14I | CCWWGG | 3 cut(s) | 1252, 1416, 2331 |
| EcoT38I | GRGCYC | 2 cut(s) | 1198, 2077 |
| ErhI | CCWWGG | 3 cut(s) | 1252, 1416, 2331 |
| Esp3I | CGTCTC | 1 cut(s) | 1708 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1356, 1388 |
| FaqI | GGGAC | 1 cut(s) | 2431 |
| FbaI | TGATCA | 1 cut(s) | 934 |
| FokI | GGATG | 8 cut(s) | 17, 533, 599, 631, 1019, 2042, 2203, 2294 |
| FriOI | GRGCYC | 2 cut(s) | 1198, 2077 |
| GlaI | GCGC | 3 cut(s) | 789, 1938, 2024 |
| GsuI | CTGGAG | 3 cut(s) | 1147, 1377, 2346 |
| HaeIII | GGCC | 3 cut(s) | 2020, 2069, 2483 |
| HapII | CCGG | 4 cut(s) | 917, 1219, 1638, 2213 |
| HgaI | GACGC | 3 cut(s) | 537, 1414, 2293 |
| HhaI | GCGC | 3 cut(s) | 790, 1939, 2025 |
| Hin1I | GRCGYC | 1 cut(s) | 1406 |
| Hin6I | GCGC | 3 cut(s) | 788, 1937, 2023 |
| HinP1I | GCGC | 3 cut(s) | 788, 1937, 2023 |
| HincII | GTYRAC | 1 cut(s) | 1384 |
| HindII | GTYRAC | 1 cut(s) | 1384 |
| HindIII | AAGCTT | 4 cut(s) | 230, 1569, 1857, 2393 |
| HpaII | CCGG | 4 cut(s) | 917, 1219, 1638, 2213 |
| HphI | GGTGA | 5 cut(s) | 743, 940, 1404, 1985, 2117 |
| Hpy166II | GTNNAC | 5 cut(s) | 89, 839, 1384, 1671, 1722 |
| Hpy8I | GTNNAC | 5 cut(s) | 89, 839, 1384, 1671, 1722 |
| HpyAV | CCTTC | 8 cut(s) | 53, 300, 473, 1013, 1313, 1832, 1883, 1894 |
| HpyCH4III | ACNGT | 6 cut(s) | 739, 992, 1381, 1666, 1675, 1719 |
| HpyCH4IV | ACGT | 1 cut(s) | 1583 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 545, 554, 1499, 1647, 1850, 2020 |
| HpySE526I | ACGT | 1 cut(s) | 1583 |
| Hsp92I | GRCGYC | 1 cut(s) | 1406 |
| HspAI | GCGC | 3 cut(s) | 788, 1937, 2023 |
| KpnI | GGTACC | 1 cut(s) | 1208 |
| Ksp22I | TGATCA | 1 cut(s) | 934 |
| Kzo9I | GATC | 6 cut(s) | 704, 907, 934, 1369, 2089, 2474 |
| LguI | GCTCTTC | 1 cut(s) | 2166 |
| LmnI | GCTCC | 3 cut(s) | 536, 1072, 2146 |
| Lsp1109I | GCAGC | 8 cut(s) | 223, 946, 1222, 1417, 1626, 1921, 1981, 2509 |
| LweI | GCATC | 4 cut(s) | 316, 511, 577, 609 |
| MaeII | ACGT | 1 cut(s) | 1583 |
| MalI | GATC | 6 cut(s) | 706, 909, 936, 1371, 2091, 2476 |
| MboI | GATC | 6 cut(s) | 704, 907, 934, 1369, 2089, 2474 |
| MflI | RGATCY | 2 cut(s) | 704, 1369 |
| MhlI | GDGCHC | 5 cut(s) | 841, 985, 1198, 1635, 2077 |
| MlyI | GAGTC | 1 cut(s) | 863 |
| MmeI | TCCRAC | 2 cut(s) | 582, 2491 |
| MroXI | GAANNNNTTC | 1 cut(s) | 310 |
| MslI | CAYNNNNRTG | 5 cut(s) | 396, 729, 1764, 1956, 2130 |
| MspA1I | CMGCKG | 4 cut(s) | 1617, 1853, 1994, 2296 |
| MspCI | CTTAAG | 1 cut(s) | 2171 |
| MspI | CCGG | 4 cut(s) | 917, 1219, 1638, 2213 |
| MspR9I | CCNGG | 7 cut(s) | 636, 978, 1126, 1220, 1469, 2027, 2214 |
| MvaI | CCWGG | 5 cut(s) | 636, 978, 1126, 1469, 2027 |
| MvnI | CGCG | 3 cut(s) | 1815, 2023, 2104 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 545, 554, 1499, 1647, 1850, 2020 |
| NciI | CCSGG | 2 cut(s) | 1220, 2214 |
| NcoI | CCATGG | 2 cut(s) | 1416, 2331 |
| NdeII | GATC | 6 cut(s) | 704, 907, 934, 1369, 2089, 2474 |
| NlaIV | GGNNCC | 5 cut(s) | 1206, 1267, 2068, 2112, 2464 |
| NmuCI | GTSAC | 7 cut(s) | 731, 928, 986, 1675, 1973, 2118, 2305 |
| NruI | TCGCGA | 1 cut(s) | 1815 |
| NspI | RCATGY | 2 cut(s) | 1658, 1763 |
| PaeR7I | CTCGAG | 2 cut(s) | 205, 1191 |
| PagI | TCATGA | 2 cut(s) | 43, 355 |
| PciI | ACATGT | 1 cut(s) | 1654 |
| PciSI | GCTCTTC | 1 cut(s) | 2166 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 572 |
| PdmI | GAANNNNTTC | 1 cut(s) | 310 |
| PflFI | GACNNNGTC | 1 cut(s) | 1379 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 152, 797 |
| PfoI | TCCNGGA | 3 cut(s) | 1124, 1218, 1467 |
| PleI | GAGTC | 1 cut(s) | 862 |
| PpsI | GAGTC | 1 cut(s) | 862 |
| PscI | ACATGT | 1 cut(s) | 1654 |
| PshBI | ATTAAT | 1 cut(s) | 996 |
| PsiI | TTATAA | 1 cut(s) | 1863 |
| Psp124BI | GAGCTC | 2 cut(s) | 1198, 2077 |
| Psp1406I | AACGTT | 1 cut(s) | 1583 |
| Psp6I | CCWGG | 5 cut(s) | 634, 976, 1124, 1467, 2025 |
| PspEI | GGTNACC | 1 cut(s) | 739 |
| PspGI | CCWGG | 5 cut(s) | 634, 976, 1124, 1467, 2025 |
| PspN4I | GGNNCC | 5 cut(s) | 1206, 1267, 2068, 2112, 2464 |
| PspPI | GGNCC | 2 cut(s) | 2067, 2328 |
| PspXI | VCTCGAGB | 2 cut(s) | 205, 1191 |
| PstI | CTGCAG | 2 cut(s) | 1240, 1616 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1997 |
| PsuI | RGATCY | 2 cut(s) | 704, 1369 |
| PsyI | GACNNNGTC | 1 cut(s) | 1379 |
| PvuII | CAGCTG | 4 cut(s) | 1617, 1853, 1994, 2296 |
| RruI | TCGCGA | 1 cut(s) | 1815 |
| RsaI | GTAC | 5 cut(s) | 203, 758, 1206, 1325, 1525 |
| RsaNI | GTAC | 5 cut(s) | 202, 757, 1205, 1324, 1524 |
| RseI | CAYNNNNRTG | 5 cut(s) | 396, 729, 1764, 1956, 2130 |
| SacI | GAGCTC | 2 cut(s) | 1198, 2077 |
| SapI | GCTCTTC | 1 cut(s) | 2166 |
| Sau3AI | GATC | 6 cut(s) | 704, 907, 934, 1369, 2089, 2474 |
| Sau96I | GGNCC | 2 cut(s) | 2067, 2328 |
| ScaI | AGTACT | 1 cut(s) | 203 |
| SchI | GAGTC | 1 cut(s) | 863 |
| ScrFI | CCNGG | 7 cut(s) | 636, 978, 1126, 1220, 1469, 2027, 2214 |
| SduI | GDGCHC | 5 cut(s) | 841, 985, 1198, 1635, 2077 |
| SfaNI | GCATC | 4 cut(s) | 316, 511, 577, 609 |
| SfcI | CTRYAG | 2 cut(s) | 1236, 1612 |
| Sfr274I | CTCGAG | 2 cut(s) | 205, 1191 |
| SinI | GGWCC | 1 cut(s) | 2328 |
| SlaI | CTCGAG | 2 cut(s) | 205, 1191 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 396, 729, 1764, 1956, 2130 |
| SmlI | CTYRAG | 4 cut(s) | 205, 1191, 2171, 2532 |
| SmoI | CTYRAG | 4 cut(s) | 205, 1191, 2171, 2532 |
| SsiI | CCGC | 5 cut(s) | 650, 914, 1795, 2021, 2102 |
| SspI | AATATT | 2 cut(s) | 1455, 1867 |
| SstI | GAGCTC | 2 cut(s) | 1198, 2077 |
| StyD4I | CCNGG | 7 cut(s) | 634, 976, 1124, 1218, 1467, 2025, 2212 |
| StyI | CCWWGG | 3 cut(s) | 1252, 1416, 2331 |
| TaaI | ACNGT | 6 cut(s) | 739, 992, 1381, 1666, 1675, 1719 |
| TaiI | ACGT | 1 cut(s) | 1586 |
| TaqI | TCGA | 7 cut(s) | 206, 265, 701, 1192, 1275, 1350, 1787 |
| TatI | WGTACW | 1 cut(s) | 201 |
| TauI | GCSGC | 2 cut(s) | 2023, 2104 |
| TscAI | CASTG | 7 cut(s) | 91, 995, 1205, 1245, 1384, 1771, 2121 |
| TseFI | GTSAC | 7 cut(s) | 731, 928, 986, 1675, 1973, 2118, 2305 |
| TseI | GCWGC | 8 cut(s) | 211, 959, 1235, 1430, 1614, 1934, 1994, 2497 |
| Tsp45I | GTSAC | 7 cut(s) | 731, 928, 986, 1675, 1973, 2118, 2305 |
| TspDTI | ATGAA | 7 cut(s) | 72, 413, 678, 855, 1179, 2046, 2346 |
| TspGWI | ACGGA | 1 cut(s) | 2480 |
| TspRI | CASTG | 7 cut(s) | 91, 995, 1205, 1245, 1384, 1771, 2121 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1379 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 152, 797 |
| Vha464I | CTTAAG | 1 cut(s) | 2171 |
| VneI | GTGCAC | 1 cut(s) | 837 |
| VpaK11BI | GGWCC | 1 cut(s) | 2328 |
| VspI | ATTAAT | 1 cut(s) | 996 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1251 |
| XapI | RAATTY | 3 cut(s) | 269, 1549, 2288 |
| XceI | RCATGY | 2 cut(s) | 1658, 1763 |
| XhoI | CTCGAG | 2 cut(s) | 205, 1191 |
| XmnI | GAANNNNTTC | 1 cut(s) | 310 |
| ZrmI | AGTACT | 1 cut(s) | 203 |