MD16G1283900.v1.1

Protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0011315
Physical Location & Seq
Forward (+)
40201279 .. 40220234
18956 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1283900.v1.1.491

Sequence Viewer

Length: 2652 bp
ATGGATGTTGAAGTGGTTGATGTCGAAGGAATGGTGCATTGTGGGATGGCGGATGATGGTGATGCTGAACAAAGTGAAGGTGTAGAAGTGAATAATGGCAAAAATTCAGAGGCTCATGATGAAGATGGGATTTCTGAGCCATACGTGGGTATGGAATTTACTTCTGAAGAGGCTGGTAAGACTTTCTATGATGAATACGCCAGGCGTTTGGGTTTTAGCTCTAAAGTTGGTCAATCCAGTCGTTCTAAACCTGATGGGACAACCATAGCTCGGGAGTTTGTATGTGGCAGAGAGGGTTTGAAAAGAAGGCATGCTGATAGTTGTGATGCAATGCTTAGGATAGAGTTAAAGGATCAAGACAAGTGGGTTTCAACGAAATTTGTGAAGGAGCATAGTCATGCATTAGTGAATCCTGCTAAAATGCAATATATCCGGCCTCGCCGGCATTTTGCTGGTGCAGCAAAGAACGCAGCTGAAACTTATCAAGGAGTAGGGATTGTTCCCAGTGGTGTTATGTATGTATCAATGGATGGAAACCATGGAAACCATACCATTGTAGAGAAAAACCGTGTAGTTAGGAATACTTCATCTGCAGAATCAAATAGGCCTATCAAGAATGCTGTAACAGTTGATCATGCTCTTAGGCCTAGTAGTCGAAGGAGGACACTAGGGAAGGATGCTCAGAATTTGCTGGAGTATTTCAAGAAAATGCAGGCTGAGAACCCTGGTTTCTTTTATGCAATACAACTTGATGAAGATAATCACATGGCAAATGTGTTCTGGGCAGATGCGAGGTCAAGAACCGCGTACTGTCACTTTGGTGATTCTGTGACACTGGATACCACATACAGAGTCAATCAGTATAGGGTGCCCTTTGCTCCATTTACCGGAGTGAACCATCATGGTCAAATGGTTTTGTTTGGTTGTGCATTACTTCTAGATGAGTCTGAAGCATCTTTTATTTGGTTGTTCAAGACATTCCTTACAGCAATGAATGATTGCTCTCCTGTTTCGATTATGACTGATCAGGACAGAACCATACAGACAGCAGTTTCTCAGGTGTTTCCAGAAGTCCGTCACTGCATTAGCAAGTGGCATGTTTTAAGAGAAGGCCAGGATAGGTTGGCACATGTATGCCATGCACACCCCAATTTCCAGCTGGAACTTTATAATTGTATCAACTTGACTGAAACTGTCGAGGAGTTTGAATTATCATGGGATTCTATCCTTGATAAATATGACCTCAGGAGAAATGATTGGATTGAATCGTTATACCATGCTCGTGCTCAGTGGGTACCTGTGTATTTCCGGGATTCCTTTTTTGCTGCCATATCTCCCAATCAAGGGTACGATGGTTCCTTCTTTGAAGGCTATGTGAATCAACAGACCACATTACCATTGTTCTTTAGGCAATATGAAAGAGCTTTGGAGAATTGGTTTGAAAGGGAAATAGAAGCAGACTTTGATACAATTTGTACAACGCCAGTTTTGAGAACACCATCACCCATGGAGAAACAAGCAGCCAATCTTTATACAAGAAAGATTTTTTCAAAATTTCAAGAAGAGCTAGTTGAGACTTTTGTGTACACAGCAAATAGGATTGAAGGTGATGGAGCTATTAGCACATTTAGAGTTGCAAAATTCGAAGACGACAGCAAGGCATACATCGTTACATTTAACTATCCGGAGATGAGAGCTAACTGTAGTTGTCAAATGTTTGAGTATTCAGGCATTCTTTGTAGACATGTTTTGACTGTATTTACTGTAACAAATGTGCTTACATTGCCTTCCTATTATATTTTGAAACGATGGACAAGAAATGCAAAGAATGGAACTAACCCAGATGAACATAGTGGGAAGTTACATGGCCAAGAGTCTCTAACTTTACGGTACAACAATCTGTGTCGAGAAGCCATCAAATATGCAGAGGATGGGGCAACCACTACAGAAACTTTTATTGCAGCAATGACTGCTCTTAAAGATGGTGGGAAGAAGGTTTCTGTTGTGAAAAAAAATGTTGCTAAAGTTGCACCTCCTAGCTCTCAAAGTAATGTGACTGGCTATGATGACAAGAAAAACTCGACATCAACATCAGATATGACTCCACTGTTGTGGCCACACCATGATGAAGTAATGAGGCGTTTTAATTTGAATGATGCTGGTGCACCTGCTCAAAATGTTTCTGACTTGAATTTTCCACGGATGGCCCCTGTATCTCTTCATCGAGATGATGGTACTCCTGAGAATATGGTGGTACTTCCGTGTCTAAAGTCAATGACTTGGGTCATGGAAAATAAGAATTCAACACCAGGAAATAGAGTAGCTGTCATTAACCTGAAGTTGCAAGATTATAGCAGAATTCCATCAACTGAATCAGAGGTTAAGTTTCAGCTCTCAAGGGTTTCATTGGAGCCAATGTTAAGGTCCATGTCCTACATCAGTGATCAACTATCAACACCGGCTAATAAGGTTGCTGTTATAAATTTGAAGCTTCAAGACACAGAGACAACTTCAGGGGAGTCAGAGGTCAAGTTTCAAGTTTCTAGGGATACATTGGGTGCCATGCTAAGATCAATGGCCTACATCCGTGAGCAGCTTTCAACTGCTGCTGAGATCCAGTCGGAGTCCCTTGCTAAAAAGCAGCGGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005911 GO:0009506 GO:0030054 GO:0055044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COMM_domain FAR1 MULE SWIM

Protein Analysis

884

Amino Acids

100.12

Weight (kDa)

6.02

Isoelectric Point (pI)

44.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 61 - 136 3.1e-16 FAR1 DNA-binding domain
ZSWIM1-3_RNaseH-like PF21056 237 - 359 2.5e-11 Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
MULE PF10551 277 - 368 8.8e-27 MULE transposase domain
SWIM PF04434 563 - 589 4.7e-09 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1170, 2480
AarI CACCTGC 1 cut(s) 2176
Acc36I ACCTGC 1 cut(s) 2176
Acc65I GGTACC 1 cut(s) 1294
AccB1I GGYRCC 3 cut(s) 868, 1294, 2558
AccI GTMKAC 1 cut(s) 1741
AccII CGCG 1 cut(s) 806
AccIII TCCGGA 1 cut(s) 1684
AciI CCGC 3 cut(s) 50, 804, 2644
AclWI GGATC 2 cut(s) 360, 2608
AcoI YGGCCR 2 cut(s) 1867, 2114
AcuI CTGAAG 4 cut(s) 186, 969, 2357, 2496
AfaI GTAC 8 cut(s) 809, 1296, 1349, 1477, 1586, 1892, 2236, 2256
AfiI CCNNNNNNNGG 5 cut(s) 146, 270, 887, 1343, 1344
AflIII ACRYGT 2 cut(s) 1129, 1744
AjnI CCWGG 4 cut(s) 200, 724, 1113, 2308
AleI CACNNNNGTG 2 cut(s) 819, 2110
Alw21I GWGCWC 2 cut(s) 1288, 2167
Alw26I GTCTC 3 cut(s) 1568, 1881, 2498
Alw44I GTGCAC 1 cut(s) 2163
AlwI GGATC 2 cut(s) 360, 2608
Ama87I CYCGRG 1 cut(s) 270
Aor13HI TCCGGA 1 cut(s) 1684
AoxI GGCC 8 cut(s) 434, 605, 644, 1111, 1867, 2114, 2205, 2577
ApaLI GTGCAC 1 cut(s) 2163
ApeKI GCWGC 8 cut(s) 458, 470, 1325, 1520, 1961, 2593, 2606, 2641
Asp718I GGTACC 1 cut(s) 1294
AspS9I GGNCC 2 cut(s) 2206, 2424
AsuC2I CCSGG 1 cut(s) 1310
AsuHPI GGTGA 4 cut(s) 71, 833, 1494, 1619
AsuII TTCGAA 1 cut(s) 1644
AvaI CYCGRG 1 cut(s) 270
AvaII GGWCC 1 cut(s) 2424
AxyI CCTNAGG 1 cut(s) 1244
BaeGI GKGCMC 2 cut(s) 873, 2167
BaeI ACNNNNGTAYC 6 cut(s) 1286, 1319, 1339, 1372, 2246, 2279
BalI TGGCCA 2 cut(s) 1869, 2116
BanI GGYRCC 3 cut(s) 868, 1294, 2558
BauI CACGAG 1 cut(s) 1281
BbsI GAAGAC 1 cut(s) 1653
Bbv12I GWGCWC 2 cut(s) 1288, 2167
BbvI GCAGC 7 cut(s) 470, 482, 1312, 1532, 1973, 2593, 2605
BciT130I CCWGG 4 cut(s) 202, 726, 1115, 2310
BciVI GTATCC 2 cut(s) 832, 2542
BclI TGATCA 3 cut(s) 631, 1024, 2443
BcnI CCSGG 1 cut(s) 1310
BcoDI GTCTC 3 cut(s) 1568, 1881, 2498
BfaI CTAG 6 cut(s) 648, 668, 938, 1568, 2037, 2544
BfmI CTRYAG 3 cut(s) 591, 1702, 1944
BfuAI ACCTGC 1 cut(s) 2176
BfuI GTATCC 2 cut(s) 832, 2542
BglI GCCNNNNNGGC 1 cut(s) 442
BisI GCNGC 8 cut(s) 459, 471, 1326, 1521, 1962, 2594, 2607, 2642
BlsI GCNGC 8 cut(s) 460, 472, 1327, 1522, 1963, 2595, 2608, 2643
Bme1390I CCNGG 5 cut(s) 202, 726, 1115, 1310, 2310
Bme18I GGWCC 1 cut(s) 2424
BmeT110I CYCGRG 1 cut(s) 270
BmgT120I GGNCC 2 cut(s) 2206, 2424
BmiI GGNNCC 6 cut(s) 870, 1296, 1357, 2208, 2412, 2560
BmrFI CCNGG 5 cut(s) 202, 726, 1115, 1310, 2310
BmrI ACTGGG 1 cut(s) 498
BmsI GCATC 6 cut(s) 52, 316, 667, 778, 962, 2146
BmuI ACTGGG 1 cut(s) 498
BoxI GACNNNNGTC 1 cut(s) 2282
BpiI GAAGAC 1 cut(s) 1653
BpmI CTGGAG 1 cut(s) 713
Bpu10I CCTNAGC 1 cut(s) 335
Bpu14I TTCGAA 1 cut(s) 1644
BpuEI CTTGAG 1 cut(s) 2380
BpuMI CCSGG 1 cut(s) 1310
BsaAI YACGTR 1 cut(s) 145
BsaJI CCNNGG 4 cut(s) 538, 724, 1506, 2198
BsaWI WCCGGW 2 cut(s) 887, 1684
BsaXI ACNNNNNCTCC 4 cut(s) 1421, 1451, 2402, 2432
Bsc4I CCNNNNNNNGG 5 cut(s) 146, 270, 887, 1343, 1344
Bse118I RCCGGY 2 cut(s) 441, 2458
Bse1I ACTGG 6 cut(s) 237, 504, 840, 1484, 2062, 2617
Bse21I CCTNAGG 1 cut(s) 1244
Bse3DI GCAATG 4 cut(s) 336, 996, 1781, 1971
BseAI TCCGGA 1 cut(s) 1684
BseBI CCWGG 4 cut(s) 202, 726, 1115, 2310
BseDI CCNNGG 4 cut(s) 538, 724, 1506, 2198
BseGI GGATG 8 cut(s) 10, 51, 58, 535, 682, 1936, 2208, 2583
BseLI CCNNNNNNNGG 5 cut(s) 146, 270, 887, 1343, 1344
BseMI GCAATG 4 cut(s) 336, 996, 1781, 1971
BseMII CTCAG 8 cut(s) 126, 695, 708, 1070, 1258, 1301, 2232, 2601
BseNI ACTGG 6 cut(s) 237, 504, 840, 1484, 2062, 2617
BseRI GAGGAG 1 cut(s) 1214
BseSI GKGCMC 2 cut(s) 873, 2167
BseXI GCAGC 7 cut(s) 470, 482, 1312, 1532, 1973, 2593, 2605
BsgI GTGCAG 1 cut(s) 477
Bsh1236I CGCG 1 cut(s) 806
BshFI GGCC 8 cut(s) 436, 607, 646, 1113, 1869, 2116, 2207, 2579
BshNI GGYRCC 3 cut(s) 868, 1294, 2558
BsiHKAI GWGCWC 2 cut(s) 1288, 2167
BsiHKCI CYCGRG 1 cut(s) 270
BsiSI CCGG 6 cut(s) 433, 442, 888, 1309, 1685, 2459
BslFI GGGAC 2 cut(s) 271, 2611
BslI CCNNNNNNNGG 5 cut(s) 146, 270, 887, 1343, 1344
BsmAI GTCTC 3 cut(s) 1568, 1881, 2498
BsmFI GGGAC 2 cut(s) 271, 2611
BsmI GAATGC 2 cut(s) 622, 1731
BsnI GGCC 8 cut(s) 436, 607, 646, 1113, 1869, 2116, 2207, 2579
BsoBI CYCGRG 1 cut(s) 270
Bsp119I TTCGAA 1 cut(s) 1644
Bsp1286I GDGCHC 3 cut(s) 873, 1288, 2167
Bsp13I TCCGGA 1 cut(s) 1684
Bsp1407I TGTACA 2 cut(s) 1475, 1584
Bsp143I GATC 6 cut(s) 352, 631, 1024, 2443, 2570, 2613
Bsp19I CCATGG 2 cut(s) 538, 1506
BspACI CCGC 3 cut(s) 50, 804, 2644
BspANI GGCC 8 cut(s) 436, 607, 646, 1113, 1869, 2116, 2207, 2579
BspCNI CTCAG 8 cut(s) 127, 694, 709, 1069, 1257, 1300, 2233, 2602
BspEI TCCGGA 1 cut(s) 1684
BspFNI CGCG 1 cut(s) 806
BspHI TCATGA 1 cut(s) 115
BspLI GGNNCC 6 cut(s) 870, 1296, 1357, 2208, 2412, 2560
BspMAI CTGCAG 1 cut(s) 595
BspMI ACCTGC 1 cut(s) 2176
BspPI GGATC 2 cut(s) 360, 2608
BspQI GCTCTTC 1 cut(s) 1557
BspT104I TTCGAA 1 cut(s) 1644
BspT107I GGYRCC 3 cut(s) 868, 1294, 2558
BsrDI GCAATG 4 cut(s) 336, 996, 1781, 1971
BsrFI RCCGGY 2 cut(s) 441, 2458
BsrGI TGTACA 2 cut(s) 1475, 1584
BsrI ACTGG 6 cut(s) 237, 504, 840, 1484, 2062, 2617
BssAI RCCGGY 2 cut(s) 441, 2458
BssECI CCNNGG 4 cut(s) 538, 724, 1506, 2198
BssMI GATC 6 cut(s) 352, 631, 1024, 2443, 2570, 2613
BssSI CACGAG 1 cut(s) 1281
BssT1I CCWWGG 2 cut(s) 538, 1506
Bst2BI CACGAG 1 cut(s) 1281
Bst2UI CCWGG 4 cut(s) 202, 726, 1115, 2310
Bst4CI ACNGT 9 cut(s) 569, 628, 812, 1195, 1703, 1756, 1765, 1890, 2109
Bst6I CTCTTC 3 cut(s) 162, 1557, 2223
BstAPI GCANNNNNTGC 1 cut(s) 1970
BstAUI TGTACA 2 cut(s) 1475, 1584
BstBAI YACGTR 1 cut(s) 145
BstBI TTCGAA 1 cut(s) 1644
BstC8I GCNNGC 3 cut(s) 312, 443, 714
BstDSI CCRYGG 3 cut(s) 538, 1506, 2198
BstF5I GGATG 8 cut(s) 10, 51, 58, 535, 682, 1936, 2208, 2583
BstFNI CGCG 1 cut(s) 806
BstKTI GATC 6 cut(s) 355, 634, 1027, 2446, 2573, 2616
BstMAI GTCTC 3 cut(s) 1568, 1881, 2498
BstMBI GATC 6 cut(s) 352, 631, 1024, 2443, 2570, 2613
BstMWI GCNNNNNNNGC 6 cut(s) 442, 458, 467, 1783, 1970, 2027
BstNI CCWGG 4 cut(s) 202, 726, 1115, 2310
BstNSI RCATGY 4 cut(s) 314, 1100, 1133, 1748
BstPAI GACNNNNGTC 1 cut(s) 2282
BstSCI CCNGG 5 cut(s) 200, 724, 1113, 1308, 2308
BstSFI CTRYAG 3 cut(s) 591, 1702, 1944
BstSLI GKGCMC 2 cut(s) 873, 2167
BstUI CGCG 1 cut(s) 806
BstV1I GCAGC 7 cut(s) 470, 482, 1312, 1532, 1973, 2593, 2605
BstV2I GAAGAC 1 cut(s) 1653
BstX2I RGATCY 1 cut(s) 2613
BstXI CCANNNNNNTGG 2 cut(s) 208, 2112
BstYI RGATCY 1 cut(s) 2613
Bsu36I CCTNAGG 1 cut(s) 1244
BsuI GTATCC 2 cut(s) 832, 2542
BsuRI GGCC 8 cut(s) 436, 607, 646, 1113, 1869, 2116, 2207, 2579
BtgI CCRYGG 3 cut(s) 538, 1506, 2198
BtsCI GGATG 8 cut(s) 10, 51, 58, 535, 682, 1936, 2208, 2583
BtsI GCAGTG 1 cut(s) 1078
BtsIMutI CAGTG 6 cut(s) 511, 833, 1078, 1295, 2105, 2446
BveI ACCTGC 1 cut(s) 2176
Cac8I GCNNGC 3 cut(s) 312, 443, 714
CciI TCATGA 1 cut(s) 115
Cfr10I RCCGGY 2 cut(s) 441, 2458
Cfr13I GGNCC 2 cut(s) 2206, 2424
Csp6I GTAC 8 cut(s) 808, 1295, 1348, 1476, 1585, 1891, 2235, 2255
CspCI CAANNNNNGTGG 2 cut(s) 344, 379
CviQI GTAC 8 cut(s) 808, 1295, 1348, 1476, 1585, 1891, 2235, 2255
DpnI GATC 6 cut(s) 354, 633, 1026, 2445, 2572, 2615
DpnII GATC 6 cut(s) 352, 631, 1024, 2443, 2570, 2613
EaeI YGGCCR 2 cut(s) 1867, 2114
Eam1104I CTCTTC 3 cut(s) 162, 1557, 2223
EarI CTCTTC 3 cut(s) 162, 1557, 2223
EciI GGCGGA 1 cut(s) 65
Eco130I CCWWGG 2 cut(s) 538, 1506
Eco147I AGGCCT 2 cut(s) 607, 646
Eco47I GGWCC 1 cut(s) 2424
Eco57I CTGAAG 4 cut(s) 186, 969, 2357, 2496
Eco81I CCTNAGG 1 cut(s) 1244
Eco88I CYCGRG 1 cut(s) 270
EcoRI GAATTC 2 cut(s) 2299, 2358
EcoRII CCWGG 4 cut(s) 200, 724, 1113, 2308
EcoT14I CCWWGG 2 cut(s) 538, 1506
EcoT22I ATGCAT 1 cut(s) 403
ErhI CCWWGG 2 cut(s) 538, 1506
FaqI GGGAC 2 cut(s) 271, 2611
FbaI TGATCA 3 cut(s) 631, 1024, 2443
FblI GTMKAC 1 cut(s) 1741
Fnu4HI GCNGC 8 cut(s) 459, 471, 1326, 1521, 1962, 2594, 2607, 2642
FokI GGATG 8 cut(s) 17, 58, 65, 542, 689, 1943, 2215, 2570
Fsp4HI GCNGC 8 cut(s) 459, 471, 1326, 1521, 1962, 2594, 2607, 2642
FspBI CTAG 6 cut(s) 648, 668, 938, 1568, 2037, 2544
GluI GCNGC 8 cut(s) 459, 471, 1326, 1521, 1962, 2594, 2607, 2642
GsuI CTGGAG 1 cut(s) 713
HaeIII GGCC 8 cut(s) 436, 607, 646, 1113, 1869, 2116, 2207, 2579
HapII CCGG 6 cut(s) 433, 442, 888, 1309, 1685, 2459
HindIII AAGCTT 1 cut(s) 2489
HpaII CCGG 6 cut(s) 433, 442, 888, 1309, 1685, 2459
HphI GGTGA 4 cut(s) 71, 833, 1494, 1619
Hpy166II GTNNAC 5 cut(s) 895, 1585, 1587, 1742, 2165
Hpy8I GTNNAC 5 cut(s) 895, 1585, 1587, 1742, 2165
HpyCH4III ACNGT 9 cut(s) 569, 628, 812, 1195, 1703, 1756, 1765, 1890, 2109
HpyCH4IV ACGT 1 cut(s) 144
HpyF10VI GCNNNNNNNGC 6 cut(s) 442, 458, 467, 1783, 1970, 2027
HpySE526I ACGT 1 cut(s) 144
Kpn2I TCCGGA 1 cut(s) 1684
KpnI GGTACC 1 cut(s) 1298
KroI GCCGGC 1 cut(s) 441
KroNI GCCGGC 1 cut(s) 443
Ksp22I TGATCA 3 cut(s) 631, 1024, 2443
Kzo9I GATC 6 cut(s) 352, 631, 1024, 2443, 2570, 2613
LguI GCTCTTC 1 cut(s) 1557
LmnI GCTCC 4 cut(s) 388, 883, 1613, 2410
Lsp1109I GCAGC 7 cut(s) 470, 482, 1312, 1532, 1973, 2593, 2605
LweI GCATC 6 cut(s) 52, 316, 667, 778, 962, 2146
MaeI CTAG 6 cut(s) 648, 668, 938, 1568, 2037, 2544
MaeII ACGT 1 cut(s) 144
MaeIII GTNAC 8 cut(s) 622, 812, 829, 1076, 1669, 1765, 1860, 2053
MalI GATC 6 cut(s) 354, 633, 1026, 2445, 2572, 2615
MboI GATC 6 cut(s) 352, 631, 1024, 2443, 2570, 2613
MboII GAAGA 7 cut(s) 134, 179, 767, 1574, 1658, 2002, 2210
MflI RGATCY 1 cut(s) 2613
MhlI GDGCHC 3 cut(s) 873, 1288, 2167
MlsI TGGCCA 2 cut(s) 1869, 2116
MluNI TGGCCA 2 cut(s) 1869, 2116
MlyI GAGTC 6 cut(s) 861, 953, 1883, 2095, 2528, 2633
MmeI TCCRAC 1 cut(s) 2601
Mox20I TGGCCA 2 cut(s) 1869, 2116
Mph1103I ATGCAT 1 cut(s) 403
MroI TCCGGA 1 cut(s) 1684
MroNI GCCGGC 1 cut(s) 441
MscI TGGCCA 2 cut(s) 1869, 2116
MseI TTAA 8 cut(s) 347, 1103, 1677, 1977, 2145, 2331, 2382, 2420
MslI CAYNNNNRTG 7 cut(s) 396, 819, 1132, 1281, 2110, 2124, 2226
Msp20I TGGCCA 2 cut(s) 1869, 2116
MspA1I CMGCKG 3 cut(s) 473, 1159, 2644
MspI CCGG 6 cut(s) 433, 442, 888, 1309, 1685, 2459
MspR9I CCNGG 5 cut(s) 202, 726, 1115, 1310, 2310
Mva1269I GAATGC 2 cut(s) 622, 1731
MvaI CCWGG 4 cut(s) 202, 726, 1115, 2310
MvnI CGCG 1 cut(s) 806
MwoI GCNNNNNNNGC 6 cut(s) 442, 458, 467, 1783, 1970, 2027
NaeI GCCGGC 1 cut(s) 443
NciI CCSGG 1 cut(s) 1310
NcoI CCATGG 2 cut(s) 538, 1506
NdeII GATC 6 cut(s) 352, 631, 1024, 2443, 2570, 2613
NgoMIV GCCGGC 1 cut(s) 441
NlaIV GGNNCC 6 cut(s) 870, 1296, 1357, 2208, 2412, 2560
NmuCI GTSAC 4 cut(s) 812, 829, 1076, 2053
NsiI ATGCAT 1 cut(s) 403
NspI RCATGY 4 cut(s) 314, 1100, 1133, 1748
NspV TTCGAA 1 cut(s) 1644
OliI CACNNNNGTG 2 cut(s) 819, 2110
PaeI GCATGC 1 cut(s) 314
PagI TCATGA 1 cut(s) 115
PaqCI CACCTGC 1 cut(s) 2176
PceI AGGCCT 2 cut(s) 607, 646
PciI ACATGT 2 cut(s) 1129, 1744
PciSI GCTCTTC 1 cut(s) 1557
PctI GAATGC 2 cut(s) 622, 1731
PdiI GCCGGC 1 cut(s) 443
PfeI GAWTC 8 cut(s) 409, 596, 824, 1220, 1265, 1313, 1378, 2372
PfoI TCCNGGA 1 cut(s) 1308
PkrI GCNGC 8 cut(s) 460, 472, 1327, 1522, 1963, 2595, 2608, 2643
PleI GAGTC 6 cut(s) 860, 952, 1882, 2095, 2527, 2632
PpsI GAGTC 6 cut(s) 860, 952, 1882, 2095, 2527, 2632
Ppu21I YACGTR 1 cut(s) 145
PscI ACATGT 2 cut(s) 1129, 1744
PshAI GACNNNNGTC 1 cut(s) 2282
PsiI TTATAA 2 cut(s) 1170, 2480
Psp6I CCWGG 4 cut(s) 200, 724, 1113, 2308
PspGI CCWGG 4 cut(s) 200, 724, 1113, 2308
PspN4I GGNNCC 6 cut(s) 870, 1296, 1357, 2208, 2412, 2560
PspPI GGNCC 2 cut(s) 2206, 2424
PsrI GAACNNNNNNTAC 2 cut(s) 483, 515
PstI CTGCAG 1 cut(s) 595
PsuI RGATCY 1 cut(s) 2613
PvuII CAGCTG 2 cut(s) 473, 1159
RsaI GTAC 8 cut(s) 809, 1296, 1349, 1477, 1586, 1892, 2236, 2256
RsaNI GTAC 8 cut(s) 808, 1295, 1348, 1476, 1585, 1891, 2235, 2255
RseI CAYNNNNRTG 7 cut(s) 396, 819, 1132, 1281, 2110, 2124, 2226
SapI GCTCTTC 1 cut(s) 1557
SaqAI TTAA 8 cut(s) 347, 1103, 1677, 1977, 2145, 2331, 2382, 2420
SatI GCNGC 8 cut(s) 459, 471, 1326, 1521, 1962, 2594, 2607, 2642
Sau3AI GATC 6 cut(s) 352, 631, 1024, 2443, 2570, 2613
Sau96I GGNCC 2 cut(s) 2206, 2424
SchI GAGTC 6 cut(s) 861, 953, 1883, 2095, 2528, 2633
ScrFI CCNGG 5 cut(s) 202, 726, 1115, 1310, 2310
SduI GDGCHC 3 cut(s) 873, 1288, 2167
SfaNI GCATC 6 cut(s) 52, 316, 667, 778, 962, 2146
SfcI CTRYAG 3 cut(s) 591, 1702, 1944
SfuI TTCGAA 1 cut(s) 1644
SinI GGWCC 1 cut(s) 2424
SmiMI CAYNNNNRTG 7 cut(s) 396, 819, 1132, 1281, 2110, 2124, 2226
SmlI CTYRAG 1 cut(s) 2395
SmoI CTYRAG 1 cut(s) 2395
SphI GCATGC 1 cut(s) 314
SseBI AGGCCT 2 cut(s) 607, 646
SsiI CCGC 3 cut(s) 50, 804, 2644
SspMI CTAG 6 cut(s) 648, 668, 938, 1568, 2037, 2544
StuI AGGCCT 2 cut(s) 607, 646
StyD4I CCNGG 5 cut(s) 200, 724, 1113, 1308, 2308
StyI CCWWGG 2 cut(s) 538, 1506
TaaI ACNGT 9 cut(s) 569, 628, 812, 1195, 1703, 1756, 1765, 1890, 2109
TaiI ACGT 1 cut(s) 147
TaqI TCGA 8 cut(s) 24, 655, 1013, 1197, 1644, 1906, 2081, 2224
TatI WGTACW 2 cut(s) 1475, 1584
TfiI GAWTC 8 cut(s) 409, 596, 824, 1220, 1265, 1313, 1378, 2372
Tru1I TTAA 8 cut(s) 347, 1103, 1677, 1977, 2145, 2331, 2382, 2420
Tru9I TTAA 8 cut(s) 347, 1103, 1677, 1977, 2145, 2331, 2382, 2420
TscAI CASTG 6 cut(s) 511, 840, 1085, 1295, 2112, 2446
TseFI GTSAC 4 cut(s) 812, 829, 1076, 2053
TseI GCWGC 8 cut(s) 458, 470, 1325, 1520, 1961, 2593, 2606, 2641
Tsp45I GTSAC 4 cut(s) 812, 829, 1076, 2053
TspGWI ACGGA 4 cut(s) 1064, 2215, 2250, 2576
TspRI CASTG 6 cut(s) 511, 840, 1085, 1295, 2112, 2446
VneI GTGCAC 1 cut(s) 2163
VpaK11BI GGWCC 1 cut(s) 2424
XbaI TCTAGA 1 cut(s) 937
XceI RCATGY 4 cut(s) 314, 1100, 1133, 1748
XcmI CCANNNNNNNNNTGG 1 cut(s) 1156
XmiI GTMKAC 1 cut(s) 1741
XspI CTAG 6 cut(s) 648, 668, 938, 1568, 2037, 2544
Zsp2I ATGCAT 1 cut(s) 403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.