MD06G1010400.v1.1

Protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0011315
Physical Location & Seq
Reverse (-)
1214169 .. 1221898
7730 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1010400.v1.1.491

Sequence Viewer

Length: 2652 bp
ATGGATGTTGAAGTGATTGATGTCGAAGGAATGGTGCATCATGGAATAGTGGATGATGGTGATGCTGAACGAAGTGATGGTGGAGAAGTGAATAATGCCGAAAATTCCGAGGCTCATGGTGAAGATGGGATTTCCGAGCCATATGTGGGTATGGAATTTACTTCTGAAGAGGCTGCCAAGACTTTCTATGATGAATACGCAAGGCGTTTGGGTTTTAGCTCTAAAGTTGGTCAATCTAGCCGTTCTAAACCTGATGGGACAACCATTGCTCGGGAGTTTGTATGTGGCAGAGAGGGTTTGAAAAGAAGGCATGCTGATAGTTGTGGTGCAATGCTTAGGATAGAGTTAAAGCGTCAAGATAAGTGGGTTTCGACGAAATTTGTGAAGGAGCATAGTCATGCATCAGCGAGTCCTGGTAAAATGCAATACCTTCGGCCTCGTCGGCATTTTGCGGGTGCTGCAAAGAATGCAGCTGAAACCTATCAAGGAGTAGGGATTGTTCCCAGTGGTGTTATGTATGTGTCCATGGATGGAAACCATGGTAACCGTGCCACTGTAGAGAAAAACCGTGTAGTTAGGAATACTTCATCTGCAGAATCAAATAGACCAGTCAAGAATGCTGTAACAGTCAATCATGCTCTTAGGCCTAGTAGTCGAAGGAGGACACTGGGGAAGGATGCTCAGAATTTGCTGGAGTATTTCAAGAAAATGCAGGCTGAGAACCCTGGTTTCTTTTATGCAATACAGCTTGATGAAGATAATCACATGGCAAACGTGTTCTGGGCAGATGCGAGGTCAAGAACTGCGTACTGTCATTTTGGTGATTTTGTGACACTGGATACCACATACAGAGTAAATCAGTATAGAGTGCCATTTGCTCCATTTACCGGAGTGAACCATCATGGTCAAACGGTTTTGTTTGGTTGTGCATTACTTCTAGATGAGTCCGAAGCATCTTTTATTTGGTTGTTCAAGACATTCCTTACAGCAATGAATGATAGCCCTCCTGTTTCGATTATGACTGATCAGGATAGAACCATACAGATAGCAGTTGCTCAGGTGTTTCCAGAAGTCCGCCACTGCATTAGCAAGTGGCATGTTTTAAGAGAAGGCCAGGATAGGTTGGCACATGTATGCCACGCACACCCCAATTTTCAGTTGGAACTTTATAATTGTATCAACTTGACTGAAACTGTCGAGGAGTTTGAATTGTCGTGGGATTCTATCGTTGATAAATATGACCTCAGGAGAAATGATTGGCTTCAATCATTATACAATGCTCGCGCTCAATGGGTACCTGTGTATTTCCGGGATTCCTTTTTTGCTGCTATATCTCCCAATCAAGGGTATGATGGCTCCTTTTTTGAAGGCTATGTGAATCAACAGACCACATTACCATTGTTCTTTAGGCAATATGAAAGAGCTTTGGATGACTGGTTTGAAAGGGAAATAGAAGCAGACTTTGATACAATTTGCACAACACCAGTTTTGAGAACACCATCACCCATGGAGAAACAGGCAGCCAATCTTTATACAAGAAAAATTTTTGCAAAATTTCAAGAAGAGCTAGTTGAGACTTTTGTGTACACAGCAAATAGGATTGAAGGTGCTGGAGCTATTAGCACATTCAGAGTTGCGAAATTTGAAGATGACAACAAAGCATACATCGTTACATTTAACTATCCGGAGATGAGAGCTAATTGTAGTTGTCAAATGTTTGAGTATTCAGGCATTCTTTGTAGACATGTTTTGACAGTATTTACTGTAACAAATGTGCTTACATTGCCTTCCCATTATATTTTGAAACGATGGACAAGAAATGCAAAGAATGGAACTAACCCAGATGAACGTAGTGGTGAGTTACATGGCCAAGAGTCTCTAACTTTACGGTACAACAATCTGTGTCGAGGAGCCATAAAGTATGCAGAGGATGGGGCAACCACTACGGAAACTTTTATTGCAGCAATGACTGCTCTTAAAGAGGGTGGGAAGAAGGTTTCTGTTGTGAAAAACAATGTTGCTAAAGTTGCACCTCCTAGCGGTCAGATTAGTGCGACTGGCTATGATGACAAAAAAAACTCGACATCAACATCAGATTTGACTCCTTCGTTGTGGCCACGCCATGATGAAGTAATGAGGCGTTTTAATTTGAATGATGCTGGTGCACCTGCTCAAAATGTTTCTGACCTGAATTTGCCACGGATGGCCCCTGTATCTCTTCATCGGGATGATGGTACTCAAGAGAACATGGTGGTACTTCCGTGTCTAAAGTCAATGACTTGGGTCATGGAAAATAAGAATTCAGTACCAGGAAATAGAGTAGCTGTCATTAACCTGAAGTTGCAAGATTATAGCAGAATACCGTCAACTGAATCAGAGGTTAAGTTTCAGCTCTCGAGGGTTTCATTGGAGCCAATGTTAAGGTCCATGTCCTACATCAGTGATCAGCTGTCAACACCAGCTAATAAGGTTGCTGTAATAAATTTGAAGCTTCAAGACACAGAGACAACTTCAGGGGAGTCAGAGGTCAAGTTTCAAGTTTCTAGGGATACATTAGGTGCCATGCTAAGATCAATGGCCTATATCCGCGAGCAGCTTTCAAGTGCTGCTGAGATCCAGTCGGAGTCCGTCGCTAAAAAGCAGCGGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005911 GO:0009506 GO:0030054 GO:0055044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COMM_domain FAR1 MULE SWIM

Protein Analysis

884

Amino Acids

99.71

Weight (kDa)

6.33

Isoelectric Point (pI)

46.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 61 - 134 8.6e-15 FAR1 DNA-binding domain
ZSWIM1-3_RNaseH-like PF21056 237 - 359 2.5e-10 Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
MULE PF10551 277 - 368 3.2e-26 MULE transposase domain
SWIM PF04434 563 - 589 4.7e-09 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1170
AarI CACCTGC 1 cut(s) 2176
Acc36I ACCTGC 1 cut(s) 2176
Acc65I GGTACC 1 cut(s) 1294
AccB1I GGYRCC 2 cut(s) 1294, 2558
AccI GTMKAC 1 cut(s) 1741
AccII CGCG 2 cut(s) 1284, 2589
AccIII TCCGGA 1 cut(s) 1684
AciI CCGC 5 cut(s) 452, 1075, 2040, 2587, 2644
AclWI GGATC 1 cut(s) 2608
AcoI YGGCCR 2 cut(s) 1867, 2114
AcuI CTGAAG 3 cut(s) 186, 2357, 2496
AfaI GTAC 7 cut(s) 809, 1296, 1586, 1892, 2236, 2256, 2307
AfiI CCNNNNNNNGG 6 cut(s) 146, 270, 887, 1343, 1344, 2039
AflIII ACRYGT 3 cut(s) 774, 1129, 1744
AjnI CCWGG 4 cut(s) 412, 724, 1113, 2308
Alw21I GWGCWC 1 cut(s) 2167
Alw26I GTCTC 3 cut(s) 1568, 1881, 2498
Alw44I GTGCAC 1 cut(s) 2163
AlwI GGATC 1 cut(s) 2608
Ama87I CYCGRG 2 cut(s) 270, 2395
Aor13HI TCCGGA 1 cut(s) 1684
AoxI GGCC 7 cut(s) 434, 644, 1111, 1867, 2114, 2205, 2577
ApaLI GTGCAC 1 cut(s) 2163
ApeKI GCWGC 9 cut(s) 173, 458, 470, 1325, 1520, 1961, 2593, 2606, 2641
Asp718I GGTACC 1 cut(s) 1294
AspLEI GCGC 1 cut(s) 1286
AspS9I GGNCC 2 cut(s) 2206, 2424
AsuC2I CCSGG 1 cut(s) 1310
AsuHPI GGTGA 5 cut(s) 71, 131, 833, 1494, 1868
AvaI CYCGRG 2 cut(s) 270, 2395
AvaII GGWCC 1 cut(s) 2424
AxyI CCTNAGG 1 cut(s) 1244
BaeGI GKGCMC 1 cut(s) 2167
BaeI ACNNNNGTAYC 4 cut(s) 1286, 1319, 2246, 2279
BalI TGGCCA 2 cut(s) 1869, 2116
BanI GGYRCC 2 cut(s) 1294, 2558
Bbv12I GWGCWC 1 cut(s) 2167
BbvI GCAGC 8 cut(s) 160, 445, 482, 1312, 1532, 1973, 2593, 2605
BceAI ACGGC 1 cut(s) 225
BcgI CGANNNNNNTGC 2 cut(s) 413, 447
BciT130I CCWGG 4 cut(s) 414, 726, 1115, 2310
BciVI GTATCC 2 cut(s) 832, 2542
BclI TGATCA 2 cut(s) 1024, 2443
BcnI CCSGG 1 cut(s) 1310
BcoDI GTCTC 3 cut(s) 1568, 1881, 2498
BfaI CTAG 6 cut(s) 237, 648, 938, 1568, 2037, 2544
BfmI CTRYAG 2 cut(s) 555, 591
BfuAI ACCTGC 1 cut(s) 2176
BfuI GTATCC 2 cut(s) 832, 2542
BglI GCCNNNNNGGC 1 cut(s) 442
BisI GCNGC 9 cut(s) 174, 459, 471, 1326, 1521, 1962, 2594, 2607, 2642
BlsI GCNGC 9 cut(s) 175, 460, 472, 1327, 1522, 1963, 2595, 2608, 2643
Bme1390I CCNGG 5 cut(s) 414, 726, 1115, 1310, 2310
Bme18I GGWCC 1 cut(s) 2424
BmeT110I CYCGRG 2 cut(s) 270, 2395
BmgT120I GGNCC 2 cut(s) 2206, 2424
BmiI GGNNCC 6 cut(s) 1296, 1357, 1912, 2208, 2412, 2560
BmrFI CCNGG 5 cut(s) 414, 726, 1115, 1310, 2310
BmrI ACTGGG 2 cut(s) 498, 677
BmsI GCATC 7 cut(s) 46, 52, 410, 667, 778, 962, 2146
BmuI ACTGGG 2 cut(s) 498, 677
BoxI GACNNNNGTC 1 cut(s) 2282
BpmI CTGGAG 2 cut(s) 713, 1632
Bpu10I CCTNAGC 2 cut(s) 335, 1056
BpuEI CTTGAG 1 cut(s) 2223
BpuMI CCSGG 1 cut(s) 1310
BsaJI CCNNGG 6 cut(s) 108, 525, 538, 724, 1506, 2198
BsaWI WCCGGW 2 cut(s) 887, 1684
BsaXI ACNNNNNCTCC 2 cut(s) 2402, 2432
Bsc4I CCNNNNNNNGG 6 cut(s) 146, 270, 887, 1343, 1344, 2039
Bse1I ACTGG 8 cut(s) 504, 608, 672, 840, 1439, 1484, 2062, 2617
Bse21I CCTNAGG 1 cut(s) 1244
Bse3DI GCAATG 5 cut(s) 264, 336, 996, 1781, 1971
BseAI TCCGGA 1 cut(s) 1684
BseBI CCWGG 4 cut(s) 414, 726, 1115, 2310
BseDI CCNNGG 6 cut(s) 108, 525, 538, 724, 1506, 2198
BseGI GGATG 8 cut(s) 10, 58, 535, 682, 1435, 1936, 2208, 2233
BseLI CCNNNNNNNGG 6 cut(s) 146, 270, 887, 1343, 1344, 2039
BseMI GCAATG 5 cut(s) 264, 336, 996, 1781, 1971
BseMII CTCAG 5 cut(s) 695, 708, 1070, 1258, 2601
BseNI ACTGG 8 cut(s) 504, 608, 672, 840, 1439, 1484, 2062, 2617
BseRI GAGGAG 2 cut(s) 1214, 1923
BseSI GKGCMC 1 cut(s) 2167
BseXI GCAGC 8 cut(s) 160, 445, 482, 1312, 1532, 1973, 2593, 2605
Bsh1236I CGCG 2 cut(s) 1284, 2589
BshFI GGCC 7 cut(s) 436, 646, 1113, 1869, 2116, 2207, 2579
BshNI GGYRCC 2 cut(s) 1294, 2558
BsiHKAI GWGCWC 1 cut(s) 2167
BsiHKCI CYCGRG 2 cut(s) 270, 2395
BsiSI CCGG 3 cut(s) 888, 1309, 1685
BslFI GGGAC 1 cut(s) 271
BslI CCNNNNNNNGG 6 cut(s) 146, 270, 887, 1343, 1344, 2039
BsmAI GTCTC 3 cut(s) 1568, 1881, 2498
BsmFI GGGAC 1 cut(s) 271
BsmI GAATGC 3 cut(s) 472, 622, 1731
BsnI GGCC 7 cut(s) 436, 646, 1113, 1869, 2116, 2207, 2579
BsoBI CYCGRG 2 cut(s) 270, 2395
Bsp1286I GDGCHC 1 cut(s) 2167
Bsp13I TCCGGA 1 cut(s) 1684
Bsp1407I TGTACA 1 cut(s) 1584
Bsp143I GATC 4 cut(s) 1024, 2443, 2570, 2613
Bsp19I CCATGG 3 cut(s) 525, 538, 1506
BspACI CCGC 5 cut(s) 452, 1075, 2040, 2587, 2644
BspANI GGCC 7 cut(s) 436, 646, 1113, 1869, 2116, 2207, 2579
BspCNI CTCAG 5 cut(s) 694, 709, 1069, 1257, 2602
BspEI TCCGGA 1 cut(s) 1684
BspFNI CGCG 2 cut(s) 1284, 2589
BspLI GGNNCC 6 cut(s) 1296, 1357, 1912, 2208, 2412, 2560
BspMAI CTGCAG 1 cut(s) 595
BspMI ACCTGC 1 cut(s) 2176
BspPI GGATC 1 cut(s) 2608
BspQI GCTCTTC 1 cut(s) 1557
BspT107I GGYRCC 2 cut(s) 1294, 2558
BsrDI GCAATG 5 cut(s) 264, 336, 996, 1781, 1971
BsrGI TGTACA 1 cut(s) 1584
BsrI ACTGG 8 cut(s) 504, 608, 672, 840, 1439, 1484, 2062, 2617
BssECI CCNNGG 6 cut(s) 108, 525, 538, 724, 1506, 2198
BssMI GATC 4 cut(s) 1024, 2443, 2570, 2613
BssT1I CCWWGG 3 cut(s) 525, 538, 1506
Bst2UI CCWGG 4 cut(s) 414, 726, 1115, 2310
Bst6I CTCTTC 3 cut(s) 162, 1557, 2223
BstAPI GCANNNNNTGC 2 cut(s) 467, 1970
BstAUI TGTACA 1 cut(s) 1584
BstC8I GCNNGC 4 cut(s) 312, 714, 1282, 2591
BstDEI CTNAG 8 cut(s) 335, 641, 681, 717, 1056, 1244, 2567, 2610
BstDSI CCRYGG 4 cut(s) 525, 538, 1506, 2198
BstEII GGTNACC 1 cut(s) 542
BstF5I GGATG 8 cut(s) 10, 58, 535, 682, 1435, 1936, 2208, 2233
BstFNI CGCG 2 cut(s) 1284, 2589
BstHHI GCGC 1 cut(s) 1286
BstKTI GATC 4 cut(s) 1027, 2446, 2573, 2616
BstMAI GTCTC 3 cut(s) 1568, 1881, 2498
BstMBI GATC 4 cut(s) 1024, 2443, 2570, 2613
BstMWI GCNNNNNNNGC 6 cut(s) 442, 458, 467, 1783, 1970, 2027
BstNI CCWGG 4 cut(s) 414, 726, 1115, 2310
BstNSI RCATGY 4 cut(s) 314, 1100, 1133, 1748
BstPAI GACNNNNGTC 1 cut(s) 2282
BstPI GGTNACC 1 cut(s) 542
BstSCI CCNGG 5 cut(s) 412, 724, 1113, 1308, 2308
BstSFI CTRYAG 2 cut(s) 555, 591
BstSLI GKGCMC 1 cut(s) 2167
BstUI CGCG 2 cut(s) 1284, 2589
BstV1I GCAGC 8 cut(s) 160, 445, 482, 1312, 1532, 1973, 2593, 2605
BstX2I RGATCY 1 cut(s) 2613
BstYI RGATCY 1 cut(s) 2613
Bsu36I CCTNAGG 1 cut(s) 1244
BsuI GTATCC 2 cut(s) 832, 2542
BsuRI GGCC 7 cut(s) 436, 646, 1113, 1869, 2116, 2207, 2579
BtgI CCRYGG 4 cut(s) 525, 538, 1506, 2198
BtsCI GGATG 8 cut(s) 10, 58, 535, 682, 1435, 1936, 2208, 2233
BtsI GCAGTG 1 cut(s) 1078
BtsIMutI CAGTG 6 cut(s) 511, 552, 665, 833, 1078, 2446
BveI ACCTGC 1 cut(s) 2176
Cac8I GCNNGC 4 cut(s) 312, 714, 1282, 2591
CfoI GCGC 1 cut(s) 1286
Cfr13I GGNCC 2 cut(s) 2206, 2424
CseI GACGC 1 cut(s) 341
Csp6I GTAC 7 cut(s) 808, 1295, 1585, 1891, 2235, 2255, 2306
CspCI CAANNNNNGTGG 2 cut(s) 344, 379
CviQI GTAC 7 cut(s) 808, 1295, 1585, 1891, 2235, 2255, 2306
DdeI CTNAG 8 cut(s) 335, 641, 681, 717, 1056, 1244, 2567, 2610
DpnI GATC 4 cut(s) 1026, 2445, 2572, 2615
DpnII GATC 4 cut(s) 1024, 2443, 2570, 2613
EaeI YGGCCR 2 cut(s) 1867, 2114
Eam1104I CTCTTC 3 cut(s) 162, 1557, 2223
EarI CTCTTC 3 cut(s) 162, 1557, 2223
EciI GGCGGA 1 cut(s) 1064
Eco130I CCWWGG 3 cut(s) 525, 538, 1506
Eco147I AGGCCT 1 cut(s) 646
Eco47I GGWCC 1 cut(s) 2424
Eco57I CTGAAG 3 cut(s) 186, 2357, 2496
Eco81I CCTNAGG 1 cut(s) 1244
Eco88I CYCGRG 2 cut(s) 270, 2395
Eco91I GGTNACC 1 cut(s) 542
EcoO65I GGTNACC 1 cut(s) 542
EcoRI GAATTC 1 cut(s) 2299
EcoRII CCWGG 4 cut(s) 412, 724, 1113, 2308
EcoT14I CCWWGG 3 cut(s) 525, 538, 1506
EcoT22I ATGCAT 1 cut(s) 403
ErhI CCWWGG 3 cut(s) 525, 538, 1506
FaqI GGGAC 1 cut(s) 271
FauI CCCGC 1 cut(s) 445
FauNDI CATATG 1 cut(s) 142
FbaI TGATCA 2 cut(s) 1024, 2443
FblI GTMKAC 1 cut(s) 1741
Fnu4HI GCNGC 9 cut(s) 174, 459, 471, 1326, 1521, 1962, 2594, 2607, 2642
FokI GGATG 8 cut(s) 17, 65, 542, 689, 1442, 1943, 2215, 2240
Fsp4HI GCNGC 9 cut(s) 174, 459, 471, 1326, 1521, 1962, 2594, 2607, 2642
FspBI CTAG 6 cut(s) 237, 648, 938, 1568, 2037, 2544
GlaI GCGC 1 cut(s) 1285
GluI GCNGC 9 cut(s) 174, 459, 471, 1326, 1521, 1962, 2594, 2607, 2642
GsuI CTGGAG 2 cut(s) 713, 1632
HaeIII GGCC 7 cut(s) 436, 646, 1113, 1869, 2116, 2207, 2579
HapII CCGG 3 cut(s) 888, 1309, 1685
HgaI GACGC 1 cut(s) 341
HhaI GCGC 1 cut(s) 1286
Hin6I GCGC 1 cut(s) 1284
HinP1I GCGC 1 cut(s) 1284
HincII GTYRAC 2 cut(s) 2367, 2454
HindII GTYRAC 2 cut(s) 2367, 2454
HindIII AAGCTT 1 cut(s) 2489
HpaII CCGG 3 cut(s) 888, 1309, 1685
HphI GGTGA 5 cut(s) 71, 131, 833, 1494, 1868
Hpy166II GTNNAC 7 cut(s) 895, 1585, 1587, 1742, 2165, 2367, 2454
Hpy8I GTNNAC 7 cut(s) 895, 1585, 1587, 1742, 2165, 2367, 2454
Hpy99I CGWCG 3 cut(s) 376, 444, 2633
HpyCH4IV ACGT 2 cut(s) 774, 1849
HpyF10VI GCNNNNNNNGC 6 cut(s) 442, 458, 467, 1783, 1970, 2027
HpyF3I CTNAG 8 cut(s) 335, 641, 681, 717, 1056, 1244, 2567, 2610
HpySE526I ACGT 2 cut(s) 774, 1849
HspAI GCGC 1 cut(s) 1284
Kpn2I TCCGGA 1 cut(s) 1684
KpnI GGTACC 1 cut(s) 1298
Ksp22I TGATCA 2 cut(s) 1024, 2443
Kzo9I GATC 4 cut(s) 1024, 2443, 2570, 2613
LguI GCTCTTC 1 cut(s) 1557
LmnI GCTCC 6 cut(s) 388, 883, 1361, 1613, 1910, 2410
Lsp1109I GCAGC 8 cut(s) 160, 445, 482, 1312, 1532, 1973, 2593, 2605
LweI GCATC 7 cut(s) 46, 52, 410, 667, 778, 962, 2146
MaeI CTAG 6 cut(s) 237, 648, 938, 1568, 2037, 2544
MaeII ACGT 2 cut(s) 774, 1849
MaeIII GTNAC 6 cut(s) 542, 622, 829, 1669, 1765, 1860
MalI GATC 4 cut(s) 1026, 2445, 2572, 2615
MboI GATC 4 cut(s) 1024, 2443, 2570, 2613
MboII GAAGA 7 cut(s) 134, 179, 767, 1574, 1658, 2002, 2210
MflI RGATCY 1 cut(s) 2613
MhlI GDGCHC 1 cut(s) 2167
MlsI TGGCCA 2 cut(s) 1869, 2116
MluNI TGGCCA 2 cut(s) 1869, 2116
MlyI GAGTC 6 cut(s) 418, 953, 1883, 2095, 2528, 2633
MmeI TCCRAC 2 cut(s) 1140, 2601
Mox20I TGGCCA 2 cut(s) 1869, 2116
Mph1103I ATGCAT 1 cut(s) 403
MroI TCCGGA 1 cut(s) 1684
MscI TGGCCA 2 cut(s) 1869, 2116
MseI TTAA 8 cut(s) 347, 1103, 1677, 1977, 2145, 2331, 2382, 2420
MslI CAYNNNNRTG 4 cut(s) 396, 819, 1132, 2226
Msp20I TGGCCA 2 cut(s) 1869, 2116
MspA1I CMGCKG 3 cut(s) 473, 2449, 2644
MspI CCGG 3 cut(s) 888, 1309, 1685
MspR9I CCNGG 5 cut(s) 414, 726, 1115, 1310, 2310
Mva1269I GAATGC 3 cut(s) 472, 622, 1731
MvaI CCWGG 4 cut(s) 414, 726, 1115, 2310
MvnI CGCG 2 cut(s) 1284, 2589
MwoI GCNNNNNNNGC 6 cut(s) 442, 458, 467, 1783, 1970, 2027
NciI CCSGG 1 cut(s) 1310
NcoI CCATGG 3 cut(s) 525, 538, 1506
NdeI CATATG 1 cut(s) 142
NdeII GATC 4 cut(s) 1024, 2443, 2570, 2613
NlaIV GGNNCC 6 cut(s) 1296, 1357, 1912, 2208, 2412, 2560
NmuCI GTSAC 1 cut(s) 829
NsiI ATGCAT 1 cut(s) 403
NspI RCATGY 4 cut(s) 314, 1100, 1133, 1748
PaeI GCATGC 1 cut(s) 314
PaeR7I CTCGAG 1 cut(s) 2395
PaqCI CACCTGC 1 cut(s) 2176
PceI AGGCCT 1 cut(s) 646
PciI ACATGT 2 cut(s) 1129, 1744
PciSI GCTCTTC 1 cut(s) 1557
PctI GAATGC 3 cut(s) 472, 622, 1731
PfeI GAWTC 5 cut(s) 596, 1220, 1313, 1378, 2372
PfoI TCCNGGA 1 cut(s) 1308
PkrI GCNGC 9 cut(s) 175, 460, 472, 1327, 1522, 1963, 2595, 2608, 2643
PleI GAGTC 6 cut(s) 417, 952, 1882, 2095, 2527, 2632
PpsI GAGTC 6 cut(s) 417, 952, 1882, 2095, 2527, 2632
PscI ACATGT 2 cut(s) 1129, 1744
PshAI GACNNNNGTC 1 cut(s) 2282
PsiI TTATAA 1 cut(s) 1170
Psp6I CCWGG 4 cut(s) 412, 724, 1113, 2308
PspEI GGTNACC 1 cut(s) 542
PspGI CCWGG 4 cut(s) 412, 724, 1113, 2308
PspN4I GGNNCC 6 cut(s) 1296, 1357, 1912, 2208, 2412, 2560
PspPI GGNCC 2 cut(s) 2206, 2424
PsrI GAACNNNNNNTAC 2 cut(s) 483, 515
PstI CTGCAG 1 cut(s) 595
PsuI RGATCY 1 cut(s) 2613
PvuII CAGCTG 2 cut(s) 473, 2449
RsaI GTAC 7 cut(s) 809, 1296, 1586, 1892, 2236, 2256, 2307
RsaNI GTAC 7 cut(s) 808, 1295, 1585, 1891, 2235, 2255, 2306
RseI CAYNNNNRTG 4 cut(s) 396, 819, 1132, 2226
SapI GCTCTTC 1 cut(s) 1557
SaqAI TTAA 8 cut(s) 347, 1103, 1677, 1977, 2145, 2331, 2382, 2420
SatI GCNGC 9 cut(s) 174, 459, 471, 1326, 1521, 1962, 2594, 2607, 2642
Sau3AI GATC 4 cut(s) 1024, 2443, 2570, 2613
Sau96I GGNCC 2 cut(s) 2206, 2424
SchI GAGTC 6 cut(s) 418, 953, 1883, 2095, 2528, 2633
ScrFI CCNGG 5 cut(s) 414, 726, 1115, 1310, 2310
SduI GDGCHC 1 cut(s) 2167
SfaNI GCATC 7 cut(s) 46, 52, 410, 667, 778, 962, 2146
SfcI CTRYAG 2 cut(s) 555, 591
Sfr274I CTCGAG 1 cut(s) 2395
SinI GGWCC 1 cut(s) 2424
SlaI CTCGAG 1 cut(s) 2395
SmiMI CAYNNNNRTG 4 cut(s) 396, 819, 1132, 2226
SmlI CTYRAG 2 cut(s) 2238, 2395
SmoI CTYRAG 2 cut(s) 2238, 2395
SphI GCATGC 1 cut(s) 314
SseBI AGGCCT 1 cut(s) 646
SsiI CCGC 5 cut(s) 452, 1075, 2040, 2587, 2644
SspMI CTAG 6 cut(s) 237, 648, 938, 1568, 2037, 2544
StuI AGGCCT 1 cut(s) 646
StyD4I CCNGG 5 cut(s) 412, 724, 1113, 1308, 2308
StyI CCWWGG 3 cut(s) 525, 538, 1506
TaiI ACGT 2 cut(s) 777, 1852
TaqI TCGA 8 cut(s) 24, 371, 655, 1013, 1197, 1906, 2081, 2396
TatI WGTACW 1 cut(s) 1584
TfiI GAWTC 5 cut(s) 596, 1220, 1313, 1378, 2372
Tru1I TTAA 8 cut(s) 347, 1103, 1677, 1977, 2145, 2331, 2382, 2420
Tru9I TTAA 8 cut(s) 347, 1103, 1677, 1977, 2145, 2331, 2382, 2420
TscAI CASTG 6 cut(s) 511, 559, 672, 840, 1085, 2446
TseFI GTSAC 1 cut(s) 829
TseI GCWGC 9 cut(s) 173, 458, 470, 1325, 1520, 1961, 2593, 2606, 2641
Tsp45I GTSAC 1 cut(s) 829
TspDTI ATGAA 9 cut(s) 207, 576, 768, 1007, 1431, 1860, 2142, 2210, 2394
TspGWI ACGGA 4 cut(s) 1961, 2215, 2250, 2617
TspRI CASTG 6 cut(s) 511, 559, 672, 840, 1085, 2446
VneI GTGCAC 1 cut(s) 2163
VpaK11BI GGWCC 1 cut(s) 2424
XbaI TCTAGA 1 cut(s) 937
XceI RCATGY 4 cut(s) 314, 1100, 1133, 1748
XcmI CCANNNNNNNNNTGG 1 cut(s) 1156
XhoI CTCGAG 1 cut(s) 2395
XmiI GTMKAC 1 cut(s) 1741
XspI CTAG 6 cut(s) 237, 648, 938, 1568, 2037, 2544
Zsp2I ATGCAT 1 cut(s) 403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.