Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0011315

Physical Location & Seq

Genomic Coordinates Reverse (-)

21174912 .. 21176671

Gene Structure 1760 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0122300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGCCTCTCTTTCTGCACCTGGCAGCTTTAAGCAGTATGATGTCTTTCTTAATTTTAGAGGGGAGGACACCCGCAATACTATTACCAGGGATCTTCGTGAGGCTTTAGACAAGAAGCAAATCAATACCTACATAGATGATGAAATGAAGCGTGGAGAGGATCTTGAACAGGCCCTTCTCCAAGCAATACAGAAATCAAAAATTTCCATAGTCATTTTGTCCCAAGACTATGCTTCTTCCACATGGTGCTTGGATGAACTTGCTCATATATTGAAATGCAAGGAAAGATACCAACAATTTGTTATACCCATTTTTTATCGGGTAGATCCATCACATGTAAGGCATCAGAAGGAGAGTTATGCAGCTCCATTTGTTCAGCATGAAGAACATTTCAAGGACACGCCAGACAAGGTGCTCAAGTGGAGGCATGCTTTAACGAAAGCTTCCAAACTAGCTGGGTTTGATTCACGCAAGATTTGCCCCGATTCCAAGTTAGTTAAGGAAGTTGTGGAAGATATTGTGATGCAGTTGAAGAGCATTGCCCCACAAGATGTTGAGTTCAGCTCATGCCAAGTCGACAGGGCAGAAGATAAATGCAACGAGTGTGGTGGGATTGGACATTGGGCCGAACACTGCCCTTCAGCAGGTGATGATGACATGTCTGTAGCAGCAGATGAATGCTACAACTGTCGTGGGATAGGACATTGGGCCCAAGAATGCCCTTCAGCAGATAGATGCTTCAACTGTCGTGGGATAGGACATTGGGCCCAAGACTGCCCTTCAGGCTTCAGCAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005911 GO:0009506 GO:0030054 GO:0055044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COMM_domain FAR1 MULE SWIM

Protein Analysis

265

Amino Acids

30.17

Weight (kDa)

5.7

Isoelectric Point (pI)

37.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	12 - 186	1e-53	TIR domain
TIR_2	PF13676	15 - 111	3.3e-16	TIR domain
zf-CCHC	PF00098	226 - 242	4.2e-06	Zinc knuckle
zf-CCHC	PF00098	245 - 261	4.1e-06	Zinc knuckle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011315)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27110 AT2G27110 AT2G27110
fragaria_vesca	FvH4_7g06621 FvH4_7g06621
malus_domestica	MD06G1010400.v1.1 MD16G1283900.v1.1
prunus_persica	Prupe.5G010000_v2.0.a1 Prupe.5G010000_v2.0.a1
pyrus_communis	pycom06g00850 pycom16g26020
rosa_chinensis	RchiOBHm_Chr1g0335301
rosa_multiflora	Rmu_sc0003404.1_g000006
rosa_roxburghii	Rroxscaffold_4G00316010
rosa_rugosa	Rorug01G0122300
rosa_samantha	Rh1AG143400 Rh1BG112400 Rh1CG135000 Rh1DG149000
rosa_wichuraiana	Rw0G009220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	635, 783
Acc36I	ACCTGC	2 cut(s)	635, 783
AccI	GTMKAC	1 cut(s)	576
AciI	CCGC	1 cut(s)	73
AclWI	GGATC	3 cut(s)	99, 168, 320
AcsI	RAATTY	1 cut(s)	201
AcuI	CTGAAG	4 cut(s)	624, 708, 765, 772
AdeI	CACNNNGTG	1 cut(s)	246
AfiI	CCNNNNNNNGG	1 cut(s)	644
AflIII	ACRYGT	2 cut(s)	334, 657
AgsI	TTSAA	5 cut(s)	167, 274, 394, 532, 742
AjnI	CCWGG	2 cut(s)	19, 86
AluBI	AGCT	5 cut(s)	27, 365, 443, 455, 564
AluI	AGCT	5 cut(s)	27, 365, 443, 455, 564
Alw21I	GWGCWC	1 cut(s)	417
AlwI	GGATC	3 cut(s)	99, 168, 320
AoxI	GGCC	5 cut(s)	3, 171, 624, 708, 765
ApaI	GGGCCC	2 cut(s)	712, 769
ApeKI	GCWGC	3 cut(s)	24, 362, 668
ApoI	RAATTY	1 cut(s)	201
AspS9I	GGNCC	6 cut(s)	172, 624, 708, 709, 765, 766
AsuHPI	GGTGA	1 cut(s)	659
BaeGI	GKGCMC	2 cut(s)	712, 769
BanII	GRGCYC	2 cut(s)	712, 769
Bbv12I	GWGCWC	1 cut(s)	417
BbvI	GCAGC	3 cut(s)	36, 374, 680
BccI	CCATC	1 cut(s)	337
BciT130I	CCWGG	2 cut(s)	21, 88
BfaI	CTAG	1 cut(s)	452
BfmI	CTRYAG	1 cut(s)	663
BfuAI	ACCTGC	2 cut(s)	635, 783
BglI	GCCNNNNNGGC	1 cut(s)	783
BisI	GCNGC	3 cut(s)	25, 363, 669
BlsI	GCNGC	3 cut(s)	26, 364, 670
Bme1390I	CCNGG	2 cut(s)	21, 88
BmgT120I	GGNCC	6 cut(s)	172, 624, 708, 709, 765, 766
BmiI	GGNNCC	2 cut(s)	710, 767
BmrFI	CCNGG	2 cut(s)	21, 88
BmsI	GCATC	3 cut(s)	352, 513, 725
BplI	GAGNNNNNCTC	2 cut(s)	548, 580
BpuEI	CTTGAG	1 cut(s)	401
BsaJI	CCNNGG	1 cut(s)	87
Bsc4I	CCNNNNNNNGG	1 cut(s)	644
Bse3DI	GCAATG	1 cut(s)	537
BseBI	CCWGG	2 cut(s)	21, 88
BseDI	CCNNGG	1 cut(s)	87
BseGI	GGATG	1 cut(s)	259
BseLI	CCNNNNNNNGG	1 cut(s)	644
BseMI	GCAATG	1 cut(s)	537
BseSI	GKGCMC	2 cut(s)	712, 769
BseXI	GCAGC	3 cut(s)	36, 374, 680
BseYI	CCCAGC	1 cut(s)	455
BshFI	GGCC	5 cut(s)	5, 173, 626, 710, 767
BsiHKAI	GWGCWC	1 cut(s)	417
BslFI	GGGAC	1 cut(s)	205
BslI	CCNNNNNNNGG	1 cut(s)	644
BsmFI	GGGAC	1 cut(s)	205
BsmI	GAATGC	2 cut(s)	683, 722
BsnI	GGCC	5 cut(s)	5, 173, 626, 710, 767
Bsp120I	GGGCCC	2 cut(s)	708, 765
Bsp1286I	GDGCHC	3 cut(s)	417, 712, 769
Bsp143I	GATC	3 cut(s)	91, 160, 325
BspACI	CCGC	1 cut(s)	73
BspANI	GGCC	5 cut(s)	5, 173, 626, 710, 767
BspLI	GGNNCC	2 cut(s)	710, 767
BspMI	ACCTGC	2 cut(s)	635, 783
BspPI	GGATC	3 cut(s)	99, 168, 320
BspQI	GCTCTTC	1 cut(s)	527
BsrDI	GCAATG	1 cut(s)	537
BssECI	CCNNGG	1 cut(s)	87
BssMI	GATC	3 cut(s)	91, 160, 325
Bst2UI	CCWGG	2 cut(s)	21, 88
Bst4CI	ACNGT	2 cut(s)	689, 746
Bst6I	CTCTTC	1 cut(s)	527
BstAPI	GCANNNNNTGC	1 cut(s)	477
BstC8I	GCNNGC	1 cut(s)	429
BstENI	CCTNNNNNAGG	1 cut(s)	642
BstF5I	GGATG	1 cut(s)	259
BstKTI	GATC	3 cut(s)	94, 163, 328
BstMBI	GATC	3 cut(s)	91, 160, 325
BstMWI	GCNNNNNNNGC	2 cut(s)	477, 783
BstNI	CCWGG	2 cut(s)	21, 88
BstNSI	RCATGY	3 cut(s)	338, 431, 661
BstSCI	CCNGG	2 cut(s)	19, 86
BstSFI	CTRYAG	1 cut(s)	663
BstSLI	GKGCMC	2 cut(s)	712, 769
BstV1I	GCAGC	3 cut(s)	36, 374, 680
BstX2I	RGATCY	3 cut(s)	91, 160, 325
BstYI	RGATCY	3 cut(s)	91, 160, 325
BsuRI	GGCC	5 cut(s)	5, 173, 626, 710, 767
BtsCI	GGATG	1 cut(s)	259
BtsI	GCAGTG	1 cut(s)	631
BtsIMutI	CAGTG	1 cut(s)	631
BveI	ACCTGC	2 cut(s)	635, 783
Cac8I	GCNNGC	1 cut(s)	429
Cfr13I	GGNCC	6 cut(s)	172, 624, 708, 709, 765, 766
CspCI	CAANNNNNGTGG	6 cut(s)	586, 621, 673, 708, 730, 765
CviAII	CATG	6 cut(s)	243, 335, 380, 428, 567, 658
DpnI	GATC	3 cut(s)	93, 162, 327
DpnII	GATC	3 cut(s)	91, 160, 325
DraIII	CACNNNGTG	1 cut(s)	246
Eam1104I	CTCTTC	1 cut(s)	527
EarI	CTCTTC	1 cut(s)	527
Eco24I	GRGCYC	2 cut(s)	712, 769
Eco57I	CTGAAG	4 cut(s)	624, 708, 765, 772
EcoNI	CCTNNNNNAGG	1 cut(s)	642
EcoO109I	RGGNCCY	1 cut(s)	172
EcoRII	CCWGG	2 cut(s)	19, 86
EcoT38I	GRGCYC	2 cut(s)	712, 769
FaeI	CATG	6 cut(s)	246, 338, 383, 431, 570, 661
FaqI	GGGAC	1 cut(s)	205
FatI	CATG	6 cut(s)	242, 334, 379, 427, 566, 657
FauI	CCCGC	1 cut(s)	80
FblI	GTMKAC	1 cut(s)	576
Fnu4HI	GCNGC	3 cut(s)	25, 363, 669
FokI	GGATG	1 cut(s)	266
FriOI	GRGCYC	2 cut(s)	712, 769
Fsp4HI	GCNGC	3 cut(s)	25, 363, 669
FspBI	CTAG	1 cut(s)	452
GluI	GCNGC	3 cut(s)	25, 363, 669
GsaI	CCCAGC	1 cut(s)	459
HaeIII	GGCC	5 cut(s)	5, 173, 626, 710, 767
Hin1II	CATG	6 cut(s)	246, 338, 383, 431, 570, 661
HincII	GTYRAC	1 cut(s)	577
HindII	GTYRAC	1 cut(s)	577
HindIII	AAGCTT	1 cut(s)	441
HinfI	GANTC	2 cut(s)	464, 485
HphI	GGTGA	1 cut(s)	659
Hpy166II	GTNNAC	1 cut(s)	577
Hpy188I	TCNGA	1 cut(s)	348
Hpy188III	TCNNGA	2 cut(s)	98, 164
Hpy8I	GTNNAC	1 cut(s)	577
HpyAV	CCTTC	5 cut(s)	185, 343, 648, 732, 789
HpyCH4III	ACNGT	2 cut(s)	689, 746
HpyCH4V	TGCA	5 cut(s)	17, 279, 362, 526, 597
HpyF10VI	GCNNNNNNNGC	2 cut(s)	477, 783
Hsp92II	CATG	6 cut(s)	246, 338, 383, 431, 570, 661
Kzo9I	GATC	3 cut(s)	91, 160, 325
LguI	GCTCTTC	1 cut(s)	527
LmnI	GCTCC	1 cut(s)	370
Lsp1109I	GCAGC	3 cut(s)	36, 374, 680
LweI	GCATC	3 cut(s)	352, 513, 725
MaeI	CTAG	1 cut(s)	452
MalI	GATC	3 cut(s)	93, 162, 327
MboI	GATC	3 cut(s)	91, 160, 325
MboII	GAAGA	6 cut(s)	86, 228, 395, 524, 544, 599
MflI	RGATCY	3 cut(s)	91, 160, 325
MhlI	GDGCHC	3 cut(s)	417, 712, 769
MluCI	AATT	3 cut(s)	52, 201, 296
MnlI	CCTC	6 cut(s)	16, 53, 58, 94, 151, 417
MseI	TTAA	4 cut(s)	30, 51, 434, 498
MspR9I	CCNGG	2 cut(s)	21, 88
Mva1269I	GAATGC	2 cut(s)	683, 722
MvaI	CCWGG	2 cut(s)	21, 88
MwoI	GCNNNNNNNGC	2 cut(s)	477, 783
NdeII	GATC	3 cut(s)	91, 160, 325
NlaIII	CATG	6 cut(s)	246, 338, 383, 431, 570, 661
NlaIV	GGNNCC	2 cut(s)	710, 767
NspI	RCATGY	3 cut(s)	338, 431, 661
PaeI	GCATGC	1 cut(s)	431
PaqCI	CACCTGC	2 cut(s)	635, 783
PciI	ACATGT	2 cut(s)	334, 657
PciSI	GCTCTTC	1 cut(s)	527
PctI	GAATGC	2 cut(s)	683, 722
PfeI	GAWTC	2 cut(s)	464, 485
PkrI	GCNGC	3 cut(s)	26, 364, 670
PscI	ACATGT	2 cut(s)	334, 657
Psp6I	CCWGG	2 cut(s)	19, 86
PspFI	CCCAGC	1 cut(s)	455
PspGI	CCWGG	2 cut(s)	19, 86
PspN4I	GGNNCC	2 cut(s)	710, 767
PspOMI	GGGCCC	2 cut(s)	708, 765
PspPI	GGNCC	6 cut(s)	172, 624, 708, 709, 765, 766
PsuI	RGATCY	3 cut(s)	91, 160, 325
SalI	GTCGAC	1 cut(s)	575
SapI	GCTCTTC	1 cut(s)	527
SaqAI	TTAA	4 cut(s)	30, 51, 434, 498
SatI	GCNGC	3 cut(s)	25, 363, 669
Sau3AI	GATC	3 cut(s)	91, 160, 325
Sau96I	GGNCC	6 cut(s)	172, 624, 708, 709, 765, 766
ScrFI	CCNGG	2 cut(s)	21, 88
SduI	GDGCHC	3 cut(s)	417, 712, 769
SfaNI	GCATC	3 cut(s)	352, 513, 725
SfcI	CTRYAG	1 cut(s)	663
SmlI	CTYRAG	1 cut(s)	416
SmoI	CTYRAG	1 cut(s)	416
SphI	GCATGC	1 cut(s)	431
Sse9I	AATT	3 cut(s)	52, 201, 296
SsiI	CCGC	1 cut(s)	73
SspMI	CTAG	1 cut(s)	452
StyD4I	CCNGG	2 cut(s)	19, 86
TaaI	ACNGT	2 cut(s)	689, 746
TaqI	TCGA	1 cut(s)	576
TasI	AATT	3 cut(s)	52, 201, 296
TfiI	GAWTC	2 cut(s)	464, 485
Tru1I	TTAA	4 cut(s)	30, 51, 434, 498
Tru9I	TTAA	4 cut(s)	30, 51, 434, 498
TscAI	CASTG	1 cut(s)	638
TseI	GCWGC	3 cut(s)	24, 362, 668
TspDTI	ATGAA	5 cut(s)	156, 161, 270, 396, 690
TspRI	CASTG	1 cut(s)	638
XagI	CCTNNNNNAGG	1 cut(s)	642
XapI	RAATTY	1 cut(s)	201
XceI	RCATGY	3 cut(s)	338, 431, 661
XcmI	CCANNNNNNNNNTGG	1 cut(s)	247
XmiI	GTMKAC	1 cut(s)	576
XspI	CTAG	1 cut(s)	452

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.