AT2G27550

Phosphatidylethanolamine-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0012758
Physical Location & Seq
Forward (+)
11773187 .. 11774746
1560 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G27550.1

Sequence Viewer

Length: 528 bp
ATGGCCAGGATTTCCTCAGACCCGCTTATGGTTGGGAGAGTGATCGGAGACGTTGTGGACAATTGTTTGCAGGCAGTGAAAATGACGGTGACCTATAATTCTGACAAGCAAGTCTACAATGGCCATGAACTTTTCCCTTCTGTAGTTACATACAAACCTAAGGTTGAAGTTCATGGGGGTGACATGAGATCATTCTTCACTTTGGTTATGACTGATCCTGATGTTCCTGGACCTAGTGATCCTTATCTGAGAGAGCACTTGCACTGGATTGTTACCGATATCCCGGGGACGACTGATGTATCATTTGGTAAAGAGATAATCGGGTACGAGATGCCTCGGCCAAACATAGGGATCCACCGCTTTGTGTATTTGTTGTTCAAGCAGACCCGTAGAGGAAGTGTGGTGTCTGTGCCATCTTACAGAGACCAATTCAACACTCGAGAGTTTGCTCATGAGAACGATCTTGGCCTCCCCGTCGCGGCTGTTTTCTTCAACTGCCAGCGTGAGACCGCCGCTAGACGCCGTTGA

Protein Analysis

175

Amino Acids

19.89

Weight (kDa)

7.01

Isoelectric Point (pI)

33.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PBP PF01161 52 - 161 8.7e-11 Phosphatidylethanolamine-binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012758)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G27550
fragaria_vesca FvH4_3g24700
malus_domestica MD03G1143000.v1.1 MD11G1163500.v1.1
prunus_persica Prupe.6G128400_v2.0.a1 Prupe.6G128400_v2.0.a1
pyrus_communis pycom03g09760
rosa_chinensis RchiOBHm_Chr5g0044251
rosa_laevigata RLG00000034260
rosa_multiflora Rmu_sc0000776.1_g000051
rosa_roxburghii Rroxscaffold_1G00036720
rosa_rugosa Rorug05G0212900
rosa_samantha Rh5AG297200 Rh5BG304600 Rh5CG331500 Rh5DG313500
rosa_wichuraiana Rw0G015760 Rw5G027520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 110
AccI GTMKAC 1 cut(s) 114
AccII CGCG 1 cut(s) 479
AciI CCGC 5 cut(s) 23, 358, 479, 510, 513
AclWI GGATC 4 cut(s) 209, 233, 346, 359
AcoI YGGCCR 3 cut(s) 3, 121, 338
AcyI GRCGYC 1 cut(s) 520
AfaI GTAC 1 cut(s) 326
AfiI CCNNNNNNNGG 3 cut(s) 28, 347, 478
AgsI TTSAA 4 cut(s) 167, 379, 433, 493
AjnI CCWGG 2 cut(s) 5, 226
Alw21I GWGCWC 1 cut(s) 258
Alw26I GTCTC 3 cut(s) 42, 417, 500
AlwI GGATC 4 cut(s) 209, 233, 346, 359
Ama87I CYCGRG 2 cut(s) 283, 438
AoxI GGCC 4 cut(s) 3, 121, 338, 466
AspS9I GGNCC 1 cut(s) 230
AsuC2I CCSGG 2 cut(s) 284, 285
AsuHPI GGTGA 2 cut(s) 100, 191
AvaI CYCGRG 2 cut(s) 283, 438
AvaII GGWCC 1 cut(s) 230
AxyI CCTNAGG 1 cut(s) 159
BaeI ACNNNNGTAYC 2 cut(s) 282, 315
BalI TGGCCA 2 cut(s) 5, 123
BamHI GGATCC 1 cut(s) 351
Bbv12I GWGCWC 1 cut(s) 258
BccI CCATC 1 cut(s) 421
BceAI ACGGC 1 cut(s) 507
BciT130I CCWGG 2 cut(s) 7, 228
BcnI CCSGG 2 cut(s) 284, 285
BcoDI GTCTC 3 cut(s) 42, 417, 500
BfaI CTAG 2 cut(s) 234, 516
BfmI CTRYAG 1 cut(s) 141
BisI GCNGC 2 cut(s) 480, 513
BlsI GCNGC 2 cut(s) 481, 514
Bme1390I CCNGG 4 cut(s) 7, 228, 284, 285
Bme18I GGWCC 1 cut(s) 230
BmeT110I CYCGRG 2 cut(s) 283, 438
BmgT120I GGNCC 1 cut(s) 230
BmiI GGNNCC 1 cut(s) 353
BmrFI CCNGG 4 cut(s) 7, 228, 284, 285
BmsI GCATC 1 cut(s) 321
BpuMI CCSGG 2 cut(s) 284, 285
BsaBI GATNNNNATC 1 cut(s) 243
BsaHI GRCGYC 1 cut(s) 520
BsaI GGTCTC 2 cut(s) 417, 500
BsaJI CCNNGG 3 cut(s) 283, 284, 335
BsaXI ACNNNNNCTCC 2 cut(s) 39, 69
Bsc4I CCNNNNNNNGG 3 cut(s) 28, 347, 478
Bse1I ACTGG 1 cut(s) 269
Bse21I CCTNAGG 1 cut(s) 159
Bse8I GATNNNNATC 1 cut(s) 243
BseBI CCWGG 2 cut(s) 7, 228
BseDI CCNNGG 3 cut(s) 283, 284, 335
BseJI GATNNNNATC 1 cut(s) 243
BseLI CCNNNNNNNGG 3 cut(s) 28, 347, 478
BseMII CTCAG 2 cut(s) 30, 239
BseNI ACTGG 1 cut(s) 269
Bsh1236I CGCG 1 cut(s) 479
BshFI GGCC 4 cut(s) 5, 123, 340, 468
BsiHKAI GWGCWC 1 cut(s) 258
BsiHKCI CYCGRG 2 cut(s) 283, 438
BsiSI CCGG 1 cut(s) 284
BslFI GGGAC 1 cut(s) 301
BslI CCNNNNNNNGG 3 cut(s) 28, 347, 478
BsmAI GTCTC 3 cut(s) 42, 417, 500
BsmBI CGTCTC 1 cut(s) 42
BsmFI GGGAC 1 cut(s) 301
BsnI GGCC 4 cut(s) 5, 123, 340, 468
Bso31I GGTCTC 2 cut(s) 417, 500
BsoBI CYCGRG 2 cut(s) 283, 438
Bsp1286I GDGCHC 1 cut(s) 258
Bsp143I GATC 6 cut(s) 42, 188, 214, 238, 351, 460
BspACI CCGC 5 cut(s) 23, 358, 479, 510, 513
BspANI GGCC 4 cut(s) 5, 123, 340, 468
BspCNI CTCAG 2 cut(s) 29, 240
BspFNI CGCG 1 cut(s) 479
BspHI TCATGA 1 cut(s) 451
BspLI GGNNCC 1 cut(s) 353
BspPI GGATC 4 cut(s) 209, 233, 346, 359
BspTNI GGTCTC 2 cut(s) 417, 500
BsrI ACTGG 1 cut(s) 269
BssECI CCNNGG 3 cut(s) 283, 284, 335
BssMI GATC 6 cut(s) 42, 188, 214, 238, 351, 460
BssNI GRCGYC 1 cut(s) 520
Bst2UI CCWGG 2 cut(s) 7, 228
Bst4CI ACNGT 1 cut(s) 88
BstACI GRCGYC 1 cut(s) 520
BstC8I GCNNGC 2 cut(s) 72, 500
BstDEI CTNAG 3 cut(s) 16, 159, 248
BstEII GGTNACC 1 cut(s) 88
BstFNI CGCG 1 cut(s) 479
BstKTI GATC 6 cut(s) 45, 191, 217, 241, 354, 463
BstMAI GTCTC 3 cut(s) 42, 417, 500
BstMBI GATC 6 cut(s) 42, 188, 214, 238, 351, 460
BstNI CCWGG 2 cut(s) 7, 228
BstPI GGTNACC 1 cut(s) 88
BstSCI CCNGG 4 cut(s) 5, 226, 282, 283
BstSFI CTRYAG 1 cut(s) 141
BstUI CGCG 1 cut(s) 479
BstX2I RGATCY 1 cut(s) 351
BstYI RGATCY 1 cut(s) 351
Bsu36I CCTNAGG 1 cut(s) 159
BsuRI GGCC 4 cut(s) 5, 123, 340, 468
BtsI GCAGTG 1 cut(s) 81
BtsIMutI CAGTG 2 cut(s) 81, 262
Cac8I GCNNGC 2 cut(s) 72, 500
CciI TCATGA 1 cut(s) 451
Cfr13I GGNCC 1 cut(s) 230
Cfr9I CCCGGG 1 cut(s) 283
Csp6I GTAC 1 cut(s) 325
CviAII CATG 4 cut(s) 125, 173, 184, 452
CviJI RGCY 5 cut(s) 5, 123, 340, 468, 482
CviKI_1 RGCY 5 cut(s) 5, 123, 340, 468, 482
CviQI GTAC 1 cut(s) 325
DdeI CTNAG 3 cut(s) 16, 159, 248
DpnI GATC 6 cut(s) 44, 190, 216, 240, 353, 462
DpnII GATC 6 cut(s) 42, 188, 214, 238, 351, 460
DrdI GACNNNNNNGTC 1 cut(s) 110
DseDI GACNNNNNNGTC 1 cut(s) 110
EaeI YGGCCR 3 cut(s) 3, 121, 338
Eco31I GGTCTC 2 cut(s) 417, 500
Eco32I GATATC 1 cut(s) 280
Eco47I GGWCC 1 cut(s) 230
Eco81I CCTNAGG 1 cut(s) 159
Eco88I CYCGRG 2 cut(s) 283, 438
Eco91I GGTNACC 1 cut(s) 88
EcoO65I GGTNACC 1 cut(s) 88
EcoRII CCWGG 2 cut(s) 5, 226
EcoRV GATATC 1 cut(s) 280
Esp3I CGTCTC 1 cut(s) 42
FaeI CATG 4 cut(s) 128, 176, 187, 455
FaiI YATR 9 cut(s) 29, 96, 126, 151, 174, 185, 209, 347, 453
FaqI GGGAC 1 cut(s) 301
FatI CATG 4 cut(s) 124, 172, 183, 451
FauI CCCGC 1 cut(s) 30
FblI GTMKAC 1 cut(s) 114
Fnu4HI GCNGC 2 cut(s) 480, 513
Fsp4HI GCNGC 2 cut(s) 480, 513
FspBI CTAG 2 cut(s) 234, 516
GluI GCNGC 2 cut(s) 480, 513
HaeIII GGCC 4 cut(s) 5, 123, 340, 468
HapII CCGG 1 cut(s) 284
Hin1I GRCGYC 1 cut(s) 520
Hin1II CATG 4 cut(s) 128, 176, 187, 455
HpaII CCGG 1 cut(s) 284
HphI GGTGA 2 cut(s) 100, 191
Hpy166II GTNNAC 2 cut(s) 58, 115
Hpy188I TCNGA 4 cut(s) 19, 47, 103, 249
Hpy188III TCNNGA 3 cut(s) 218, 440, 452
Hpy8I GTNNAC 2 cut(s) 58, 115
Hpy99I CGWCG 1 cut(s) 479
HpyAV CCTTC 1 cut(s) 147
HpyCH4III ACNGT 1 cut(s) 88
HpyCH4IV ACGT 1 cut(s) 51
HpyCH4V TGCA 2 cut(s) 70, 262
HpyF3I CTNAG 3 cut(s) 16, 159, 248
HpySE526I ACGT 1 cut(s) 51
Hsp92I GRCGYC 1 cut(s) 520
Hsp92II CATG 4 cut(s) 128, 176, 187, 455
Kzo9I GATC 6 cut(s) 42, 188, 214, 238, 351, 460
LpnPI CCDG 8 cut(s) 19, 56, 213, 231, 240, 250, 297, 512
LweI GCATC 1 cut(s) 321
MaeI CTAG 2 cut(s) 234, 516
MaeII ACGT 1 cut(s) 51
MaeIII GTNAC 4 cut(s) 88, 145, 179, 271
MalI GATC 6 cut(s) 44, 190, 216, 240, 353, 462
MboI GATC 6 cut(s) 42, 188, 214, 238, 351, 460
MboII GAAGA 2 cut(s) 187, 481
MfeI CAATTG 1 cut(s) 61
MflI RGATCY 1 cut(s) 351
MhlI GDGCHC 1 cut(s) 258
MlsI TGGCCA 2 cut(s) 5, 123
MluCI AATT 3 cut(s) 61, 97, 428
MluNI TGGCCA 2 cut(s) 5, 123
MnlI CCTC 4 cut(s) 25, 345, 386, 479
Mox20I TGGCCA 2 cut(s) 5, 123
MscI TGGCCA 2 cut(s) 5, 123
MslI CAYNNNNRTG 1 cut(s) 177
Msp20I TGGCCA 2 cut(s) 5, 123
MspI CCGG 1 cut(s) 284
MspR9I CCNGG 4 cut(s) 7, 228, 284, 285
MunI CAATTG 1 cut(s) 61
MvaI CCWGG 2 cut(s) 7, 228
MvnI CGCG 1 cut(s) 479
NciI CCSGG 2 cut(s) 284, 285
NdeII GATC 6 cut(s) 42, 188, 214, 238, 351, 460
NlaIII CATG 4 cut(s) 128, 176, 187, 455
NlaIV GGNNCC 1 cut(s) 353
NmeAIII GCCGAG 1 cut(s) 316
NmuCI GTSAC 2 cut(s) 88, 179
PaeR7I CTCGAG 1 cut(s) 438
PagI TCATGA 1 cut(s) 451
PfoI TCCNGGA 1 cut(s) 226
PkrI GCNGC 2 cut(s) 481, 514
Psp6I CCWGG 2 cut(s) 5, 226
PspEI GGTNACC 1 cut(s) 88
PspGI CCWGG 2 cut(s) 5, 226
PspN4I GGNNCC 1 cut(s) 353
PspPI GGNCC 1 cut(s) 230
PsrI GAACNNNNNNTAC 2 cut(s) 359, 391
PsuI RGATCY 1 cut(s) 351
RsaI GTAC 1 cut(s) 326
RsaNI GTAC 1 cut(s) 325
RseI CAYNNNNRTG 1 cut(s) 177
SatI GCNGC 2 cut(s) 480, 513
Sau3AI GATC 6 cut(s) 42, 188, 214, 238, 351, 460
Sau96I GGNCC 1 cut(s) 230
ScrFI CCNGG 4 cut(s) 7, 228, 284, 285
SduI GDGCHC 1 cut(s) 258
SetI ASST 5 cut(s) 54, 95, 160, 165, 235
SfaNI GCATC 1 cut(s) 321
SfcI CTRYAG 1 cut(s) 141
Sfr274I CTCGAG 1 cut(s) 438
SinI GGWCC 1 cut(s) 230
SlaI CTCGAG 1 cut(s) 438
SmaI CCCGGG 1 cut(s) 285
SmiMI CAYNNNNRTG 1 cut(s) 177
SmlI CTYRAG 1 cut(s) 438
SmoI CTYRAG 1 cut(s) 438
Sse9I AATT 3 cut(s) 61, 97, 428
SsiI CCGC 5 cut(s) 23, 358, 479, 510, 513
SspMI CTAG 2 cut(s) 234, 516
StyD4I CCNGG 4 cut(s) 5, 226, 282, 283
TaaI ACNGT 1 cut(s) 88
TaiI ACGT 1 cut(s) 54
TaqI TCGA 1 cut(s) 439
TasI AATT 3 cut(s) 61, 97, 428
TauI GCSGC 2 cut(s) 482, 515
TscAI CASTG 2 cut(s) 81, 269
TseFI GTSAC 2 cut(s) 88, 179
Tsp45I GTSAC 2 cut(s) 88, 179
TspDTI ATGAA 2 cut(s) 141, 161
TspMI CCCGGG 1 cut(s) 283
TspRI CASTG 2 cut(s) 81, 269
VpaK11BI GGWCC 1 cut(s) 230
XhoI CTCGAG 1 cut(s) 438
XmaI CCCGGG 1 cut(s) 283
XmiI GTMKAC 1 cut(s) 114
XspI CTAG 2 cut(s) 234, 516
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.