Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000776.1

Orthogroup ID

OG0012758

Physical Location & Seq

Genomic Coordinates Forward (+)

262196 .. 263029

Gene Structure 834 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000776.1_g000051.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

atgtcagatcctcttgttgttggaagagtcattggagatgttgttgattatttctcccccagtgttaaaatggcagtgacttacaactccagcaagaaggtgtataatgggcatgagctatttccttcctcagtaaccacgaagcctaaggttgaagttcagggaggcgatctgagatctttctttacactggtcatgactgacccagatgttccaggtcctagtgatccatatctgaaggagcacttgcactggatagtcacggatatcccaggaacaactgacaacacatttggaagggaggtggtgaaatatgaaatgccgaggccaaacatagggatccacaggtttgtgttccttctgttcaagcagaaaggtaggcaaacagtgattcctcctccttccaaggaccacttcgacagtcgaaagtttgcagaagcaaacgagttcgggcttccggtggctgctgttttcttcaatgcccagagggaaactgctgcaagaagacgctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007275 GO:0008150 GO:0009791 GO:0009909 GO:0009910 GO:0010228 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0061458 GO:0065007 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PBP

Protein Analysis

170

Amino Acids

19.17

Weight (kDa)

9.15

Isoelectric Point (pI)

42.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012758)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27550
fragaria_vesca	FvH4_3g24700
malus_domestica	MD03G1143000.v1.1 MD11G1163500.v1.1
prunus_persica	Prupe.6G128400_v2.0.a1 Prupe.6G128400_v2.0.a1
pyrus_communis	pycom03g09760
rosa_chinensis	RchiOBHm_Chr5g0044251
rosa_laevigata	RLG00000034260
rosa_multiflora	Rmu_sc0000776.1_g000051
rosa_roxburghii	Rroxscaffold_1G00036720
rosa_rugosa	Rorug05G0212900
rosa_samantha	Rh5AG297200 Rh5BG304600 Rh5CG331500 Rh5DG313500
rosa_wichuraiana	Rw0G015760 Rw5G027520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	2, 221, 334, 347
AcuI	CTGAAG	1 cut(s)	257
AfiI	CCNNNNNNNGG	1 cut(s)	335
AgsI	TTSAA	3 cut(s)	155, 367, 478
AjnI	CCWGG	2 cut(s)	214, 271
AjuI	GAANNNNNNNTTGG	2 cut(s)	398, 430
AluBI	AGCT	1 cut(s)	118
AluI	AGCT	1 cut(s)	118
Alw21I	GWGCWC	1 cut(s)	246
AlwI	GGATC	4 cut(s)	2, 221, 334, 347
AoxI	GGCC	1 cut(s)	326
ApeKI	GCWGC	2 cut(s)	464, 497
ArsI	GACNNNNNNTTYG	2 cut(s)	275, 307
AspS9I	GGNCC	2 cut(s)	218, 409
AsuHPI	GGTGA	1 cut(s)	319
AvaII	GGWCC	2 cut(s)	218, 409
AxyI	CCTNAGG	1 cut(s)	147
BamHI	GGATCC	1 cut(s)	339
Bbv12I	GWGCWC	1 cut(s)	246
BbvI	GCAGC	2 cut(s)	451, 484
BciT130I	CCWGG	2 cut(s)	216, 273
BfaI	CTAG	1 cut(s)	222
BglII	AGATCT	1 cut(s)	176
BisI	GCNGC	2 cut(s)	465, 498
BlsI	GCNGC	2 cut(s)	466, 499
Bme1390I	CCNGG	2 cut(s)	216, 273
Bme18I	GGWCC	2 cut(s)	218, 409
BmgT120I	GGNCC	2 cut(s)	218, 409
BmiI	GGNNCC	1 cut(s)	341
BmrFI	CCNGG	2 cut(s)	216, 273
BmrI	ACTGGG	1 cut(s)	54
BmuI	ACTGGG	1 cut(s)	54
BpmI	CTGGAG	1 cut(s)	73
BsaBI	GATNNNNATC	1 cut(s)	231
BsaJI	CCNNGG	3 cut(s)	271, 323, 405
BsaWI	WCCGGW	1 cut(s)	457
BsaXI	ACNNNNNCTCC	2 cut(s)	27, 57
Bsc4I	CCNNNNNNNGG	1 cut(s)	335
Bse1I	ACTGG	3 cut(s)	60, 195, 257
Bse21I	CCTNAGG	1 cut(s)	147
Bse8I	GATNNNNATC	1 cut(s)	231
BseBI	CCWGG	2 cut(s)	216, 273
BseDI	CCNNGG	3 cut(s)	271, 323, 405
BseJI	GATNNNNATC	1 cut(s)	231
BseLI	CCNNNNNNNGG	1 cut(s)	335
BseMII	CTCAG	2 cut(s)	144, 164
BseNI	ACTGG	3 cut(s)	60, 195, 257
BseRI	GAGGAG	1 cut(s)	387
BseXI	GCAGC	2 cut(s)	451, 484
BshFI	GGCC	1 cut(s)	328
BsiHKAI	GWGCWC	1 cut(s)	246
BsiSI	CCGG	1 cut(s)	458
BslI	CCNNNNNNNGG	1 cut(s)	335
BsnI	GGCC	1 cut(s)	328
Bsp1286I	GDGCHC	1 cut(s)	246
Bsp143I	GATC	5 cut(s)	7, 169, 176, 226, 339
BspANI	GGCC	1 cut(s)	328
BspCNI	CTCAG	2 cut(s)	143, 165
BspHI	TCATGA	1 cut(s)	195
BspLI	GGNNCC	1 cut(s)	341
BspPI	GGATC	4 cut(s)	2, 221, 334, 347
BsrI	ACTGG	3 cut(s)	60, 195, 257
BssECI	CCNNGG	3 cut(s)	271, 323, 405
BssMI	GATC	5 cut(s)	7, 169, 176, 226, 339
BssT1I	CCWWGG	1 cut(s)	405
Bst2UI	CCWGG	2 cut(s)	216, 273
Bst4CI	ACNGT	2 cut(s)	388, 422
Bst6I	CTCTTC	1 cut(s)	19
BstDEI	CTNAG	3 cut(s)	130, 147, 173
BstKTI	GATC	5 cut(s)	10, 172, 179, 229, 342
BstMBI	GATC	5 cut(s)	7, 169, 176, 226, 339
BstNI	CCWGG	2 cut(s)	216, 273
BstSCI	CCNGG	2 cut(s)	214, 271
BstV1I	GCAGC	2 cut(s)	451, 484
BstX2I	RGATCY	3 cut(s)	7, 176, 339
BstYI	RGATCY	3 cut(s)	7, 176, 339
Bsu36I	CCTNAGG	1 cut(s)	147
BsuRI	GGCC	1 cut(s)	328
BtsI	GCAGTG	1 cut(s)	81
BtsIMutI	CAGTG	5 cut(s)	67, 81, 188, 250, 393
CciI	TCATGA	1 cut(s)	195
Cfr13I	GGNCC	2 cut(s)	218, 409
CviAII	CATG	2 cut(s)	113, 196
CviJI	RGCY	5 cut(s)	118, 145, 328, 454, 464
CviKI_1	RGCY	5 cut(s)	118, 145, 328, 454, 464
DdeI	CTNAG	3 cut(s)	130, 147, 173
DpnI	GATC	5 cut(s)	9, 171, 178, 228, 341
DpnII	GATC	5 cut(s)	7, 169, 176, 226, 339
Eam1104I	CTCTTC	1 cut(s)	19
EarI	CTCTTC	1 cut(s)	19
Eco130I	CCWWGG	1 cut(s)	405
Eco32I	GATATC	1 cut(s)	268
Eco47I	GGWCC	2 cut(s)	218, 409
Eco57I	CTGAAG	1 cut(s)	257
Eco81I	CCTNAGG	1 cut(s)	147
EcoO109I	RGGNCCY	1 cut(s)	218
EcoRII	CCWGG	2 cut(s)	214, 271
EcoRV	GATATC	1 cut(s)	268
EcoT14I	CCWWGG	1 cut(s)	405
ErhI	CCWWGG	1 cut(s)	405
FaeI	CATG	2 cut(s)	116, 199
FaiI	YATR	6 cut(s)	105, 114, 197, 232, 315, 335
FalI	AAGNNNNNCTT	4 cut(s)	230, 262, 398, 430
FatI	CATG	2 cut(s)	112, 195
Fnu4HI	GCNGC	2 cut(s)	465, 498
Fsp4HI	GCNGC	2 cut(s)	465, 498
FspBI	CTAG	1 cut(s)	222
GluI	GCNGC	2 cut(s)	465, 498
GsuI	CTGGAG	1 cut(s)	73
HaeIII	GGCC	1 cut(s)	328
HapII	CCGG	1 cut(s)	458
Hin1II	CATG	2 cut(s)	116, 199
HinfI	GANTC	2 cut(s)	27, 391
HpaII	CCGG	1 cut(s)	458
HphI	GGTGA	1 cut(s)	319
Hpy188I	TCNGA	3 cut(s)	7, 174, 237
Hpy188III	TCNNGA	1 cut(s)	196
HpyAV	CCTTC	6 cut(s)	91, 135, 232, 291, 368, 411
HpyCH4III	ACNGT	2 cut(s)	388, 422
HpyCH4V	TGCA	3 cut(s)	250, 434, 500
HpyF3I	CTNAG	3 cut(s)	130, 147, 173
Hsp92II	CATG	2 cut(s)	116, 199
Kzo9I	GATC	5 cut(s)	7, 169, 176, 226, 339
LmnI	GCTCC	1 cut(s)	241
Lsp1109I	GCAGC	2 cut(s)	451, 484
MaeI	CTAG	1 cut(s)	222
MaeIII	GTNAC	3 cut(s)	76, 133, 259
MalI	GATC	5 cut(s)	9, 171, 178, 228, 341
MboI	GATC	5 cut(s)	7, 169, 176, 226, 339
MboII	GAAGA	2 cut(s)	36, 466
MflI	RGATCY	3 cut(s)	7, 176, 339
MhlI	GDGCHC	1 cut(s)	246
MlyI	GAGTC	1 cut(s)	36
MnlI	CCTC	8 cut(s)	21, 139, 158, 295, 318, 405, 408, 480
MseI	TTAA	1 cut(s)	66
MspI	CCGG	1 cut(s)	458
MspR9I	CCNGG	2 cut(s)	216, 273
MvaI	CCWGG	2 cut(s)	216, 273
NdeII	GATC	5 cut(s)	7, 169, 176, 226, 339
NlaIII	CATG	2 cut(s)	116, 199
NlaIV	GGNNCC	1 cut(s)	341
NmeAIII	GCCGAG	1 cut(s)	348
NmuCI	GTSAC	2 cut(s)	76, 259
PagI	TCATGA	1 cut(s)	195
PfeI	GAWTC	1 cut(s)	391
PkrI	GCNGC	2 cut(s)	466, 499
PleI	GAGTC	1 cut(s)	35
PpsI	GAGTC	1 cut(s)	35
PpuMI	RGGWCCY	1 cut(s)	218
Psp5II	RGGWCCY	1 cut(s)	218
Psp6I	CCWGG	2 cut(s)	214, 271
PspGI	CCWGG	2 cut(s)	214, 271
PspN4I	GGNNCC	1 cut(s)	341
PspPI	GGNCC	2 cut(s)	218, 409
PspPPI	RGGWCCY	1 cut(s)	218
PsuI	RGATCY	3 cut(s)	7, 176, 339
SaqAI	TTAA	1 cut(s)	66
SatI	GCNGC	2 cut(s)	465, 498
Sau3AI	GATC	5 cut(s)	7, 169, 176, 226, 339
Sau96I	GGNCC	2 cut(s)	218, 409
SchI	GAGTC	1 cut(s)	36
ScrFI	CCNGG	2 cut(s)	216, 273
SduI	GDGCHC	1 cut(s)	246
SetI	ASST	7 cut(s)	102, 120, 153, 220, 306, 350, 379
SinI	GGWCC	2 cut(s)	218, 409
SspMI	CTAG	1 cut(s)	222
StyD4I	CCNGG	2 cut(s)	214, 271
StyI	CCWWGG	1 cut(s)	405
TaaI	ACNGT	2 cut(s)	388, 422
TaqI	TCGA	2 cut(s)	417, 424
TfiI	GAWTC	1 cut(s)	391
Tru1I	TTAA	1 cut(s)	66
Tru9I	TTAA	1 cut(s)	66
TscAI	CASTG	5 cut(s)	67, 81, 195, 257, 393
TseFI	GTSAC	2 cut(s)	76, 259
TseI	GCWGC	2 cut(s)	464, 497
Tsp45I	GTSAC	2 cut(s)	76, 259
TspDTI	ATGAA	1 cut(s)	330
TspGWI	ACGGA	1 cut(s)	278
TspRI	CASTG	5 cut(s)	67, 81, 195, 257, 393
VpaK11BI	GGWCC	2 cut(s)	218, 409
XcmI	CCANNNNNNNNNTGG	1 cut(s)	67
XspI	CTAG	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.