Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0012758

Physical Location & Seq

Genomic Coordinates Reverse (-)

16558444 .. 16559696

Gene Structure 1253 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1163500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGCAATGATGTCATCAGATCCTCTTGTGGTTGGGAGAGTTATTGGAGATGTTGTTGATTACTTCTCCCCCAGTGTAAGAATGACAGTCACATACAACTCGAACAAGAAGGTGTATAATGGGCATGAGCTATTTCCTTCCTCAGTAACCATCAAGCCTAAGGTTGAAGTTCATGGAGGCGATTTGAGGAGTTTCTTTACACTGGTCATGACGGATCCAGATGTTCCGGGCCCTAGTGACCCATACCTGAAGGAACACTTACACTGGATTGTGACTGACATCCCAGGCACTACTGATAACACATTTGGAAAGGAGGTGTTGAAATATGAAATGCCAAGGCCAAACATAGGGATCCACAGGTTTGTGTTTCTTCTGTTCAAGCAGAAAGCCAGGCAGACAGTGATCCCTCCTGCATCAAAGGACCACTTCAATACCCGAAAATTTGCAGAGGCAAATGACCTTGGCCTTCCTGTGACTGCTGTCTTCTTTAATGCCCAAAGAGAAACTGCTGCAAGGAGACGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007275 GO:0008150 GO:0009791 GO:0009909 GO:0009910 GO:0010228 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0061458 GO:0065007 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PBP

Protein Analysis

175

Amino Acids

19.67

Weight (kDa)

9.36

Isoelectric Point (pI)

35.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PBP	PF01161	52 - 159	1.6e-12	Phosphatidylethanolamine-binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012758)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27550
fragaria_vesca	FvH4_3g24700
malus_domestica	MD03G1143000.v1.1 MD11G1163500.v1.1
prunus_persica	Prupe.6G128400_v2.0.a1 Prupe.6G128400_v2.0.a1
pyrus_communis	pycom03g09760
rosa_chinensis	RchiOBHm_Chr5g0044251
rosa_laevigata	RLG00000034260
rosa_multiflora	Rmu_sc0000776.1_g000051
rosa_roxburghii	Rroxscaffold_1G00036720
rosa_rugosa	Rorug05G0212900
rosa_samantha	Rh5AG297200 Rh5BG304600 Rh5CG331500 Rh5DG313500
rosa_wichuraiana	Rw0G015760 Rw5G027520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	6 cut(s)	14, 209, 222, 346, 359, 397
AcsI	RAATTY	1 cut(s)	440
AcuI	CTGAAG	1 cut(s)	269
AfiI	CCNNNNNNNGG	1 cut(s)	347
AgsI	TTSAA	4 cut(s)	167, 322, 379, 430
AjnI	CCWGG	2 cut(s)	283, 389
AluBI	AGCT	1 cut(s)	130
AluI	AGCT	1 cut(s)	130
Alw26I	GTCTC	1 cut(s)	511
AlwI	GGATC	6 cut(s)	14, 209, 222, 346, 359, 397
AoxI	GGCC	3 cut(s)	229, 338, 463
ApaI	GGGCCC	1 cut(s)	233
ApeKI	GCWGC	1 cut(s)	509
ApoI	RAATTY	1 cut(s)	440
AspS9I	GGNCC	3 cut(s)	229, 230, 421
AsuC2I	CCSGG	1 cut(s)	228
AvaII	GGWCC	1 cut(s)	421
AxyI	CCTNAGG	1 cut(s)	159
BaeGI	GKGCMC	1 cut(s)	233
BamHI	GGATCC	2 cut(s)	214, 351
BanII	GRGCYC	1 cut(s)	233
BbsI	GAAGAC	1 cut(s)	475
BbvI	GCAGC	1 cut(s)	496
BccI	CCATC	1 cut(s)	158
BciT130I	CCWGG	2 cut(s)	285, 391
BcnI	CCSGG	1 cut(s)	228
BcoDI	GTCTC	1 cut(s)	511
BfaI	CTAG	1 cut(s)	234
BisI	GCNGC	1 cut(s)	510
BlsI	GCNGC	1 cut(s)	511
Bme1390I	CCNGG	3 cut(s)	228, 285, 391
Bme18I	GGWCC	1 cut(s)	421
BmgT120I	GGNCC	3 cut(s)	229, 230, 421
BmiI	GGNNCC	3 cut(s)	216, 231, 353
BmrFI	CCNGG	3 cut(s)	228, 285, 391
BmrI	ACTGGG	1 cut(s)	66
BmsI	GCATC	1 cut(s)	422
BmuI	ACTGGG	1 cut(s)	66
BoxI	GACNNNNGTC	1 cut(s)	479
BpiI	GAAGAC	1 cut(s)	475
BpuMI	CCSGG	1 cut(s)	228
BsaJI	CCNNGG	3 cut(s)	283, 335, 460
BsaXI	ACNNNNNCTCC	2 cut(s)	39, 69
Bsc4I	CCNNNNNNNGG	1 cut(s)	347
Bse1I	ACTGG	3 cut(s)	72, 207, 269
Bse21I	CCTNAGG	1 cut(s)	159
Bse3DI	GCAATG	1 cut(s)	12
BseBI	CCWGG	2 cut(s)	285, 391
BseDI	CCNNGG	3 cut(s)	283, 335, 460
BseGI	GGATG	1 cut(s)	279
BseLI	CCNNNNNNNGG	1 cut(s)	347
BseMI	GCAATG	1 cut(s)	12
BseMII	CTCAG	1 cut(s)	156
BseNI	ACTGG	3 cut(s)	72, 207, 269
BseRI	GAGGAG	1 cut(s)	202
BseSI	GKGCMC	1 cut(s)	233
BseXI	GCAGC	1 cut(s)	496
BshFI	GGCC	3 cut(s)	231, 340, 465
BsiSI	CCGG	1 cut(s)	227
BslI	CCNNNNNNNGG	1 cut(s)	347
BsmAI	GTCTC	1 cut(s)	511
BsmBI	CGTCTC	1 cut(s)	511
BsnI	GGCC	3 cut(s)	231, 340, 465
Bsp120I	GGGCCC	1 cut(s)	229
Bsp1286I	GDGCHC	1 cut(s)	233
Bsp143I	GATC	4 cut(s)	19, 214, 351, 402
BspANI	GGCC	3 cut(s)	231, 340, 465
BspCNI	CTCAG	1 cut(s)	155
BspHI	TCATGA	1 cut(s)	207
BspLI	GGNNCC	3 cut(s)	216, 231, 353
BspPI	GGATC	6 cut(s)	14, 209, 222, 346, 359, 397
BsrDI	GCAATG	1 cut(s)	12
BsrI	ACTGG	3 cut(s)	72, 207, 269
BssECI	CCNNGG	3 cut(s)	283, 335, 460
BssMI	GATC	4 cut(s)	19, 214, 351, 402
BssT1I	CCWWGG	2 cut(s)	335, 460
Bst2UI	CCWGG	2 cut(s)	285, 391
Bst4CI	ACNGT	2 cut(s)	88, 400
BstDEI	CTNAG	2 cut(s)	142, 159
BstF5I	GGATG	1 cut(s)	279
BstKTI	GATC	4 cut(s)	22, 217, 354, 405
BstMAI	GTCTC	1 cut(s)	511
BstMBI	GATC	4 cut(s)	19, 214, 351, 402
BstNI	CCWGG	2 cut(s)	285, 391
BstPAI	GACNNNNGTC	1 cut(s)	479
BstSCI	CCNGG	3 cut(s)	226, 283, 389
BstSLI	GKGCMC	1 cut(s)	233
BstV1I	GCAGC	1 cut(s)	496
BstV2I	GAAGAC	1 cut(s)	475
BstX2I	RGATCY	3 cut(s)	19, 214, 351
BstYI	RGATCY	3 cut(s)	19, 214, 351
Bsu36I	CCTNAGG	1 cut(s)	159
BsuRI	GGCC	3 cut(s)	231, 340, 465
BtsCI	GGATG	1 cut(s)	279
BtsIMutI	CAGTG	4 cut(s)	79, 200, 262, 405
CciI	TCATGA	1 cut(s)	207
Cfr13I	GGNCC	3 cut(s)	229, 230, 421
CviAII	CATG	3 cut(s)	125, 173, 208
CviJI	RGCY	6 cut(s)	130, 157, 231, 340, 389, 465
CviKI_1	RGCY	6 cut(s)	130, 157, 231, 340, 389, 465
DdeI	CTNAG	2 cut(s)	142, 159
DpnI	GATC	4 cut(s)	21, 216, 353, 404
DpnII	GATC	4 cut(s)	19, 214, 351, 402
Eco130I	CCWWGG	2 cut(s)	335, 460
Eco24I	GRGCYC	1 cut(s)	233
Eco47I	GGWCC	1 cut(s)	421
Eco57I	CTGAAG	1 cut(s)	269
Eco81I	CCTNAGG	1 cut(s)	159
EcoO109I	RGGNCCY	1 cut(s)	230
EcoRII	CCWGG	2 cut(s)	283, 389
EcoT14I	CCWWGG	2 cut(s)	335, 460
EcoT38I	GRGCYC	1 cut(s)	233
ErhI	CCWWGG	2 cut(s)	335, 460
Esp3I	CGTCTC	1 cut(s)	511
FaeI	CATG	3 cut(s)	128, 176, 211
FaiI	YATR	8 cut(s)	94, 117, 126, 174, 209, 244, 327, 347
FalI	AAGNNNNNCTT	4 cut(s)	242, 274, 410, 442
FatI	CATG	3 cut(s)	124, 172, 207
Fnu4HI	GCNGC	1 cut(s)	510
FokI	GGATG	1 cut(s)	266
FriOI	GRGCYC	1 cut(s)	233
Fsp4HI	GCNGC	1 cut(s)	510
FspBI	CTAG	1 cut(s)	234
GluI	GCNGC	1 cut(s)	510
HaeIII	GGCC	3 cut(s)	231, 340, 465
HapII	CCGG	1 cut(s)	227
Hin1II	CATG	3 cut(s)	128, 176, 211
HpaII	CCGG	1 cut(s)	227
Hpy188I	TCNGA	1 cut(s)	19
Hpy188III	TCNNGA	2 cut(s)	208, 218
HpyAV	CCTTC	4 cut(s)	103, 147, 244, 476
HpyCH4III	ACNGT	2 cut(s)	88, 400
HpyCH4V	TGCA	3 cut(s)	413, 446, 512
HpyF3I	CTNAG	2 cut(s)	142, 159
Hsp92II	CATG	3 cut(s)	128, 176, 211
Kzo9I	GATC	4 cut(s)	19, 214, 351, 402
Lsp1109I	GCAGC	1 cut(s)	496
LweI	GCATC	1 cut(s)	422
MaeI	CTAG	1 cut(s)	234
MaeIII	GTNAC	5 cut(s)	88, 145, 236, 271, 472
MalI	GATC	4 cut(s)	21, 216, 353, 404
MboI	GATC	4 cut(s)	19, 214, 351, 402
MboII	GAAGA	2 cut(s)	362, 475
MflI	RGATCY	3 cut(s)	19, 214, 351
MhlI	GDGCHC	1 cut(s)	233
MluCI	AATT	1 cut(s)	440
MnlI	CCTC	7 cut(s)	33, 151, 170, 180, 307, 417, 442
MseI	TTAA	1 cut(s)	489
MspI	CCGG	1 cut(s)	227
MspR9I	CCNGG	3 cut(s)	228, 285, 391
MvaI	CCWGG	2 cut(s)	285, 391
NciI	CCSGG	1 cut(s)	228
NdeII	GATC	4 cut(s)	19, 214, 351, 402
NlaIII	CATG	3 cut(s)	128, 176, 211
NlaIV	GGNNCC	3 cut(s)	216, 231, 353
NmuCI	GTSAC	4 cut(s)	88, 236, 271, 472
PagI	TCATGA	1 cut(s)	207
PkrI	GCNGC	1 cut(s)	511
PshAI	GACNNNNGTC	1 cut(s)	479
Psp6I	CCWGG	2 cut(s)	283, 389
PspGI	CCWGG	2 cut(s)	283, 389
PspN4I	GGNNCC	3 cut(s)	216, 231, 353
PspOMI	GGGCCC	1 cut(s)	229
PspPI	GGNCC	3 cut(s)	229, 230, 421
PsuI	RGATCY	3 cut(s)	19, 214, 351
SaqAI	TTAA	1 cut(s)	489
SatI	GCNGC	1 cut(s)	510
Sau3AI	GATC	4 cut(s)	19, 214, 351, 402
Sau96I	GGNCC	3 cut(s)	229, 230, 421
ScrFI	CCNGG	3 cut(s)	228, 285, 391
SduI	GDGCHC	1 cut(s)	233
SetI	ASST	7 cut(s)	114, 132, 165, 249, 318, 362, 462
SfaNI	GCATC	1 cut(s)	422
SinI	GGWCC	1 cut(s)	421
Sse9I	AATT	1 cut(s)	440
SspMI	CTAG	1 cut(s)	234
StyD4I	CCNGG	3 cut(s)	226, 283, 389
StyI	CCWWGG	2 cut(s)	335, 460
TaaI	ACNGT	2 cut(s)	88, 400
TaqI	TCGA	1 cut(s)	101
TasI	AATT	1 cut(s)	440
Tru1I	TTAA	1 cut(s)	489
Tru9I	TTAA	1 cut(s)	489
TscAI	CASTG	4 cut(s)	79, 207, 269, 405
TseFI	GTSAC	4 cut(s)	88, 236, 271, 472
TseI	GCWGC	1 cut(s)	509
Tsp45I	GTSAC	4 cut(s)	88, 236, 271, 472
TspDTI	ATGAA	2 cut(s)	161, 342
TspGWI	ACGGA	1 cut(s)	227
TspRI	CASTG	4 cut(s)	79, 207, 269, 405
VpaK11BI	GGWCC	1 cut(s)	421
XapI	RAATTY	1 cut(s)	440
XspI	CTAG	1 cut(s)	234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.