AT2G28105

Replication factor-A C terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0008709
Physical Location & Seq
Forward (+)
11976303 .. 11977913
1611 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G28105.1

Sequence Viewer

Length: 501 bp
ATGGAAGCCACTGAAACGGTTCTTTGCACGTTGCTTGCCGTCGACCTCACAGATTATTGCTATAGAGTTTGTTCTCGCTGCCAGAGAGTTCTTCCTTCAGATAACAATGGCTTTGCTTCTTCTTCATTTTGCAAATTCTGCAAATCAAAAGAACCAAAACTTCTCTATCGGATTCTCATGTCAATAGCAACAGATGCATCAGTGAAAACTGTGATATGCTTTGATAGAGCTGCAACTGTTCTCTTTGGTTGTTCAGCTGATGAGTTCTTCCACTTCACTAAGCTCAATCCATTAGCCGCATCAATGGTGAATCAGGTCTTTGATGGAGAAATGCTTAGGATGACGTTAACTCGGCCTCAAAACCGAAACGCGCAACACATGAGAGTCGCTTCAGTTGTTCCTCTACGATCAGGAGTTCAGCCTGCAATTGTAACCTTGAGACAGATTTGCACAAAGAATGCTTCTTTAGGGAATTTTTCTACAACAAATCACAGTTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rep_fac-A_C

Protein Analysis

166

Amino Acids

18.4

Weight (kDa)

8.94

Isoelectric Point (pI)

29.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rep_fac-A_C PF08646 7 - 113 2e-08 Replication factor-A C terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 42
AccII CGCG 1 cut(s) 371
AciI CCGC 1 cut(s) 297
AcsI RAATTY 2 cut(s) 134, 472
AcuI CTGAAG 2 cut(s) 81, 375
AluBI AGCT 3 cut(s) 230, 257, 283
AluI AGCT 3 cut(s) 230, 257, 283
Alw26I GTCTC 1 cut(s) 433
AoxI GGCC 1 cut(s) 353
ApeKI GCWGC 2 cut(s) 78, 230
ApoI RAATTY 2 cut(s) 134, 472
Asp700I GAANNNNTTC 1 cut(s) 18
AspLEI GCGC 1 cut(s) 373
AsuHPI GGTGA 1 cut(s) 319
BbvI GCAGC 2 cut(s) 65, 217
BccI CCATC 1 cut(s) 317
BceAI ACGGC 1 cut(s) 23
BcoDI GTCTC 1 cut(s) 433
BfmI CTRYAG 1 cut(s) 61
BisI GCNGC 3 cut(s) 79, 231, 297
BlsI GCNGC 3 cut(s) 80, 232, 298
BmsI GCATC 3 cut(s) 184, 206, 308
Bpu10I CCTNAGC 1 cut(s) 335
BpuEI CTTGAG 1 cut(s) 457
BseGI GGATG 1 cut(s) 345
BseXI GCAGC 2 cut(s) 65, 217
Bsh1236I CGCG 1 cut(s) 371
BshFI GGCC 1 cut(s) 355
BsmAI GTCTC 1 cut(s) 433
BsmI GAATGC 1 cut(s) 463
BsnI GGCC 1 cut(s) 355
Bsp143I GATC 1 cut(s) 407
BspACI CCGC 1 cut(s) 297
BspANI GGCC 1 cut(s) 355
BspFNI CGCG 1 cut(s) 371
BssMI GATC 1 cut(s) 407
Bst4CI ACNGT 4 cut(s) 19, 211, 238, 494
BstAPI GCANNNNNTGC 2 cut(s) 138, 194
BstC8I GCNNGC 2 cut(s) 36, 423
BstDEI CTNAG 2 cut(s) 279, 335
BstF5I GGATG 1 cut(s) 345
BstFNI CGCG 1 cut(s) 371
BstHHI GCGC 1 cut(s) 373
BstKTI GATC 1 cut(s) 410
BstMAI GTCTC 1 cut(s) 433
BstMBI GATC 1 cut(s) 407
BstMWI GCNNNNNNNGC 2 cut(s) 138, 194
BstSFI CTRYAG 1 cut(s) 61
BstUI CGCG 1 cut(s) 371
BstV1I GCAGC 2 cut(s) 65, 217
BsuRI GGCC 1 cut(s) 355
BtsCI GGATG 1 cut(s) 345
BtsIMutI CAGTG 2 cut(s) 9, 207
Cac8I GCNNGC 2 cut(s) 36, 423
CfoI GCGC 1 cut(s) 373
CviAII CATG 2 cut(s) 178, 379
CviJI RGCY 8 cut(s) 8, 111, 230, 257, 283, 296, 355, 421
CviKI_1 RGCY 8 cut(s) 8, 111, 230, 257, 283, 296, 355, 421
DdeI CTNAG 2 cut(s) 279, 335
DpnI GATC 1 cut(s) 409
DpnII GATC 1 cut(s) 407
Eco57I CTGAAG 2 cut(s) 81, 375
EcoT22I ATGCAT 1 cut(s) 199
FaeI CATG 2 cut(s) 181, 382
FaiI YATR 4 cut(s) 63, 179, 217, 380
FatI CATG 2 cut(s) 177, 378
FblI GTMKAC 1 cut(s) 42
Fnu4HI GCNGC 3 cut(s) 79, 231, 297
FokI GGATG 1 cut(s) 352
Fsp4HI GCNGC 3 cut(s) 79, 231, 297
GlaI GCGC 1 cut(s) 372
GluI GCNGC 3 cut(s) 79, 231, 297
HaeIII GGCC 1 cut(s) 355
HhaI GCGC 1 cut(s) 373
Hin1II CATG 2 cut(s) 181, 382
Hin6I GCGC 1 cut(s) 371
HinP1I GCGC 1 cut(s) 371
HincII GTYRAC 2 cut(s) 43, 348
HindII GTYRAC 2 cut(s) 43, 348
HinfI GANTC 3 cut(s) 172, 310, 384
HpaI GTTAAC 1 cut(s) 348
HphI GGTGA 1 cut(s) 319
Hpy166II GTNNAC 2 cut(s) 43, 348
Hpy188I TCNGA 2 cut(s) 100, 171
Hpy188III TCNNGA 1 cut(s) 411
Hpy8I GTNNAC 2 cut(s) 43, 348
Hpy99I CGWCG 1 cut(s) 44
HpyAV CCTTC 1 cut(s) 105
HpyCH4III ACNGT 4 cut(s) 19, 211, 238, 494
HpyCH4IV ACGT 2 cut(s) 29, 344
HpyCH4V TGCA 7 cut(s) 27, 132, 141, 197, 233, 425, 450
HpyF10VI GCNNNNNNNGC 2 cut(s) 138, 194
HpyF3I CTNAG 2 cut(s) 279, 335
HpySE526I ACGT 2 cut(s) 29, 344
Hsp92II CATG 2 cut(s) 181, 382
HspAI GCGC 1 cut(s) 371
KspAI GTTAAC 1 cut(s) 348
Kzo9I GATC 1 cut(s) 407
LpnPI CCDG 4 cut(s) 95, 299, 396, 435
Lsp1109I GCAGC 2 cut(s) 65, 217
LweI GCATC 3 cut(s) 184, 206, 308
MaeII ACGT 2 cut(s) 29, 344
MaeIII GTNAC 1 cut(s) 430
MalI GATC 1 cut(s) 409
MboI GATC 1 cut(s) 407
MboII GAAGA 4 cut(s) 83, 111, 114, 259
MfeI CAATTG 1 cut(s) 426
MluCI AATT 3 cut(s) 134, 426, 472
MlyI GAGTC 1 cut(s) 393
MnlI CCTC 3 cut(s) 56, 366, 411
Mph1103I ATGCAT 1 cut(s) 199
MroXI GAANNNNTTC 1 cut(s) 18
MseI TTAA 1 cut(s) 347
MspA1I CMGCKG 1 cut(s) 257
MunI CAATTG 1 cut(s) 426
Mva1269I GAATGC 1 cut(s) 463
MvnI CGCG 1 cut(s) 371
MwoI GCNNNNNNNGC 2 cut(s) 138, 194
NdeII GATC 1 cut(s) 407
NlaIII CATG 2 cut(s) 181, 382
NmeAIII GCCGAG 1 cut(s) 331
NsiI ATGCAT 1 cut(s) 199
PctI GAATGC 1 cut(s) 463
PdmI GAANNNNTTC 1 cut(s) 18
PfeI GAWTC 2 cut(s) 172, 310
PkrI GCNGC 3 cut(s) 80, 232, 298
PleI GAGTC 1 cut(s) 392
PpsI GAGTC 1 cut(s) 392
PvuII CAGCTG 1 cut(s) 257
SalI GTCGAC 1 cut(s) 41
SaqAI TTAA 1 cut(s) 347
SatI GCNGC 3 cut(s) 79, 231, 297
Sau3AI GATC 1 cut(s) 407
SchI GAGTC 1 cut(s) 393
SetI ASST 8 cut(s) 32, 48, 232, 259, 285, 318, 347, 437
SfaNI GCATC 3 cut(s) 184, 206, 308
SfcI CTRYAG 1 cut(s) 61
SmlI CTYRAG 1 cut(s) 436
SmoI CTYRAG 1 cut(s) 436
Sse9I AATT 3 cut(s) 134, 426, 472
SsiI CCGC 1 cut(s) 297
TaaI ACNGT 4 cut(s) 19, 211, 238, 494
TaiI ACGT 2 cut(s) 32, 347
TaqI TCGA 1 cut(s) 42
TasI AATT 3 cut(s) 134, 426, 472
TauI GCSGC 1 cut(s) 299
TfiI GAWTC 2 cut(s) 172, 310
Tru1I TTAA 1 cut(s) 347
Tru9I TTAA 1 cut(s) 347
TscAI CASTG 2 cut(s) 16, 207
TseI GCWGC 2 cut(s) 78, 230
TspDTI ATGAA 1 cut(s) 114
TspRI CASTG 2 cut(s) 16, 207
XapI RAATTY 2 cut(s) 134, 472
XmiI GTMKAC 1 cut(s) 42
XmnI GAANNNNTTC 1 cut(s) 18
Zsp2I ATGCAT 1 cut(s) 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.