Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003730.1

Orthogroup ID

OG0008709

Physical Location & Seq

Genomic Coordinates Reverse (-)

57142 .. 58176

Gene Structure 1035 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003730.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

atgatgtgcacacttctggcaatagaccacaccgacttctcttacagagcatgctccctctgcgagaggactctccctgacaacccatcttccctctgtagatactgcaacccctctgccttcaacccccgcttccctcgctccaaacgcttctttcgcattcttatgtcaattgcttcggataccaaggtgttcactgtcatatgctttgatagggtagccaaggtcctctttggttgctctgctgatgagtttttcgactttgcgaaatttcacccttttgctgctgctaatgctagtagaattctggagggagagatgtttaagatgacaatatccaaaccgaagaatggtaatgcacaaaatctgcgagcagtacaagttgtaccattgaagactggttttcagccagcaattgtgaccttgagggaattgtatggagtaagaagctcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rep_fac-A_C

Protein Analysis

151

Amino Acids

17.04

Weight (kDa)

9.37

Isoelectric Point (pI)

33.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008709)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28105 AT2G28105
fragaria_vesca	FvH4_3g30910 FvH4_3g30910 FvH4_3g30910 FvH4_3g30910 FvH4_3g30910
malus_domestica	MD11G1146400.v1.1
prunus_persica	Prupe.6G109500_v2.0.a1 Prupe.6G109500_v2.0.a1
pyrus_communis	pycom11g11940
rosa_chinensis	RchiOBHm_Chr5g0057451
rosa_laevigata	RLG00000035155
rosa_multiflora	Rmu_co8372183.1_g000001 Rmu_sc0003730.1_g000013 Rmu_sc0028908.1_g000001
rosa_roxburghii	Rroxscaffold_1G00023000
rosa_rugosa	Rorug05G0307400
rosa_samantha	Rh5AG375900 Rh5BG386700 Rh5CG410200 Rh5DG401000
rosa_wichuraiana	Rw5G035490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	130
AcsI	RAATTY	2 cut(s)	269, 303
AfaI	GTAC	2 cut(s)	378, 387
AfiI	CCNNNNNNNGG	1 cut(s)	350
AgsI	TTSAA	2 cut(s)	124, 394
AluBI	AGCT	1 cut(s)	450
AluI	AGCT	1 cut(s)	450
Alw21I	GWGCWC	1 cut(s)	11
Alw44I	GTGCAC	1 cut(s)	7
ApaLI	GTGCAC	1 cut(s)	7
ApeKI	GCWGC	2 cut(s)	284, 287
ApoI	RAATTY	2 cut(s)	269, 303
AspS9I	GGNCC	1 cut(s)	226
AsuHPI	GGTGA	1 cut(s)	266
AvaII	GGWCC	1 cut(s)	226
BaeGI	GKGCMC	1 cut(s)	11
BaeI	ACNNNNGTAYC	2 cut(s)	174, 207
BbsI	GAAGAC	1 cut(s)	401
Bbv12I	GWGCWC	1 cut(s)	11
BbvI	GCAGC	2 cut(s)	271, 274
BccI	CCATC	1 cut(s)	94
BciVI	GTATCC	1 cut(s)	175
BfaI	CTAG	1 cut(s)	297
BfmI	CTRYAG	1 cut(s)	97
BfuI	GTATCC	1 cut(s)	175
BisI	GCNGC	2 cut(s)	285, 288
BlsI	GCNGC	2 cut(s)	286, 289
Bme18I	GGWCC	1 cut(s)	226
BmgT120I	GGNCC	1 cut(s)	226
BpiI	GAAGAC	1 cut(s)	401
BpmI	CTGGAG	1 cut(s)	329
BpuEI	CTTGAG	1 cut(s)	445
BsaJI	CCNNGG	2 cut(s)	186, 222
Bsc4I	CCNNNNNNNGG	1 cut(s)	350
Bse1I	ACTGG	1 cut(s)	403
BseDI	CCNNGG	2 cut(s)	186, 222
BseLI	CCNNNNNNNGG	1 cut(s)	350
BseNI	ACTGG	1 cut(s)	403
BseSI	GKGCMC	1 cut(s)	11
BseXI	GCAGC	2 cut(s)	271, 274
BsiHKAI	GWGCWC	1 cut(s)	11
BslI	CCNNNNNNNGG	1 cut(s)	350
BsmI	GAATGC	1 cut(s)	159
Bsp1286I	GDGCHC	1 cut(s)	11
BspACI	CCGC	1 cut(s)	130
BsrI	ACTGG	1 cut(s)	403
BssECI	CCNNGG	2 cut(s)	186, 222
BssT1I	CCWWGG	2 cut(s)	186, 222
Bst4CI	ACNGT	1 cut(s)	199
BstC8I	GCNNGC	3 cut(s)	52, 372, 411
BstMWI	GCNNNNNNNGC	5 cut(s)	60, 138, 147, 156, 293
BstNSI	RCATGY	1 cut(s)	54
BstSFI	CTRYAG	1 cut(s)	97
BstSLI	GKGCMC	1 cut(s)	11
BstV1I	GCAGC	2 cut(s)	271, 274
BstV2I	GAAGAC	1 cut(s)	401
BsuI	GTATCC	1 cut(s)	175
BtsIMutI	CAGTG	1 cut(s)	195
Cac8I	GCNNGC	3 cut(s)	52, 372, 411
Cfr13I	GGNCC	1 cut(s)	226
Csp6I	GTAC	2 cut(s)	377, 386
CviAII	CATG	1 cut(s)	51
CviJI	RGCY	3 cut(s)	221, 409, 450
CviKI_1	RGCY	3 cut(s)	221, 409, 450
CviQI	GTAC	2 cut(s)	377, 386
Eco130I	CCWWGG	2 cut(s)	186, 222
Eco47I	GGWCC	1 cut(s)	226
EcoO109I	RGGNCCY	1 cut(s)	226
EcoRI	GAATTC	1 cut(s)	303
EcoT14I	CCWWGG	2 cut(s)	186, 222
ErhI	CCWWGG	2 cut(s)	186, 222
FaeI	CATG	1 cut(s)	54
FaiI	YATR	5 cut(s)	52, 167, 203, 205, 438
FalI	AAGNNNNNCTT	3 cut(s)	215, 247, 436
FatI	CATG	1 cut(s)	50
FauI	CCCGC	1 cut(s)	137
FauNDI	CATATG	1 cut(s)	203
Fnu4HI	GCNGC	2 cut(s)	285, 288
Fsp4HI	GCNGC	2 cut(s)	285, 288
FspBI	CTAG	1 cut(s)	297
GluI	GCNGC	2 cut(s)	285, 288
GsuI	CTGGAG	1 cut(s)	329
Hin1II	CATG	1 cut(s)	54
HinfI	GANTC	1 cut(s)	70
HphI	GGTGA	1 cut(s)	266
Hpy166II	GTNNAC	2 cut(s)	9, 195
Hpy188I	TCNGA	1 cut(s)	181
Hpy188III	TCNNGA	2 cut(s)	308, 453
Hpy8I	GTNNAC	2 cut(s)	9, 195
HpyAV	CCTTC	1 cut(s)	130
HpyCH4III	ACNGT	1 cut(s)	199
HpyCH4V	TGCA	3 cut(s)	9, 108, 359
HpyF10VI	GCNNNNNNNGC	5 cut(s)	60, 138, 147, 156, 293
Hsp92II	CATG	1 cut(s)	54
LmnI	GCTCC	2 cut(s)	59, 146
LpnPI	CCDG	5 cut(s)	2, 90, 293, 384, 423
Lsp1109I	GCAGC	2 cut(s)	271, 274
MaeI	CTAG	1 cut(s)	297
MaeIII	GTNAC	1 cut(s)	418
MboII	GAAGA	3 cut(s)	81, 358, 406
MfeI	CAATTG	2 cut(s)	171, 414
MhlI	GDGCHC	1 cut(s)	11
MluCI	AATT	5 cut(s)	171, 269, 303, 414, 431
MlyI	GAGTC	1 cut(s)	64
MnlI	CCTC	8 cut(s)	60, 68, 104, 124, 147, 239, 304, 420
MseI	TTAA	1 cut(s)	324
MslI	CAYNNNNRTG	1 cut(s)	164
MunI	CAATTG	2 cut(s)	171, 414
Mva1269I	GAATGC	1 cut(s)	159
MwoI	GCNNNNNNNGC	5 cut(s)	60, 138, 147, 156, 293
NdeI	CATATG	1 cut(s)	203
NlaIII	CATG	1 cut(s)	54
NmuCI	GTSAC	1 cut(s)	418
NspI	RCATGY	1 cut(s)	54
PaeI	GCATGC	1 cut(s)	54
PctI	GAATGC	1 cut(s)	159
PkrI	GCNGC	2 cut(s)	286, 289
PleI	GAGTC	1 cut(s)	64
PpsI	GAGTC	1 cut(s)	64
PpuMI	RGGWCCY	1 cut(s)	226
Psp5II	RGGWCCY	1 cut(s)	226
PspPI	GGNCC	1 cut(s)	226
PspPPI	RGGWCCY	1 cut(s)	226
RsaI	GTAC	2 cut(s)	378, 387
RsaNI	GTAC	2 cut(s)	377, 386
RseI	CAYNNNNRTG	1 cut(s)	164
SaqAI	TTAA	1 cut(s)	324
SatI	GCNGC	2 cut(s)	285, 288
Sau96I	GGNCC	1 cut(s)	226
SchI	GAGTC	1 cut(s)	64
SduI	GDGCHC	1 cut(s)	11
SetI	ASST	4 cut(s)	192, 228, 425, 452
SfcI	CTRYAG	1 cut(s)	97
SinI	GGWCC	1 cut(s)	226
SmiMI	CAYNNNNRTG	1 cut(s)	164
SmlI	CTYRAG	1 cut(s)	424
SmoI	CTYRAG	1 cut(s)	424
SphI	GCATGC	1 cut(s)	54
Sse9I	AATT	5 cut(s)	171, 269, 303, 414, 431
SsiI	CCGC	1 cut(s)	130
SspMI	CTAG	1 cut(s)	297
StyI	CCWWGG	2 cut(s)	186, 222
TaaI	ACNGT	1 cut(s)	199
TaqI	TCGA	1 cut(s)	258
TasI	AATT	5 cut(s)	171, 269, 303, 414, 431
TatI	WGTACW	1 cut(s)	376
Tru1I	TTAA	1 cut(s)	324
Tru9I	TTAA	1 cut(s)	324
TscAI	CASTG	1 cut(s)	202
TseFI	GTSAC	1 cut(s)	418
TseI	GCWGC	2 cut(s)	284, 287
Tsp45I	GTSAC	1 cut(s)	418
TspRI	CASTG	1 cut(s)	202
VneI	GTGCAC	1 cut(s)	7
VpaK11BI	GGWCC	1 cut(s)	226
XapI	RAATTY	2 cut(s)	269, 303
XceI	RCATGY	1 cut(s)	54
XspI	CTAG	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.